Choi Yumi

Choi Yumi - Student Master 2

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2026

2401. Decoding plants cell by cell: opportunities and challenges in single-cell and spatial biology

De Veylder L., Saura-Sanchez M., De Rybel B., Norobi T., Vandepoele K., Caputi L., O’Connor S.E. and Xu J.

(2026/08) - Plant Cell

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2400. The MassBank contributions of the mFam collaboration

Ahlendorf A., Aharoni A., Vahabi K., Fischer T.G., Allard P.-M., Augustin M., Bathe U., Broadhurst D.I., Broeckling C., Buescher J., Covaci A., da Silva K.M., de Vos R.C.H., Devi M.G., Döll S., Frey M., Frolov A., Gaquerel E., Gautam V., Charria-Girón E., Goossens A., Grosjean J., Halabalaki M., Iturrospe E., Kultima K., Herman S., Kutchan T.M., Larbat R., Meier R., Mikropoulou E.V., Mouille G., Nicolotti L., Shahaf N., Perreau F., Pétriacq P., Reichelt M., Reinke S.N., Robeyns R., Soboleva A., Spring O., Sreenivasan A.P., Tissier A., Totozafy J.C., Tsugawa F., Valls-Fonayet J., van de Lavoir M., van der Hooft J.J.J., Vergara F., Wishart D., Wessjohann L.A., Wolfender J.-L., Ziegler J., Balcke G.U. and Neumann S.

(2026/07) - Metabolomics

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2399. Decoding stage-specific symbiotic programs in the Rhizophagus irregularis–tomato interaction using single-nucleus transcriptomics

Stuer N., Leroy T., Eekhout T., De Keyser A., Staut J., De Rybel B., Vandepoele K., Van Damme P., Van Dingenen J. and Goormachtig S.

(2026/06) - Current Biology

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2398. Cunninghamia lanceolata genome illuminates the evolutionary dynamics of gymnosperms

Lin S.-Z.°, Chen Y.°, Wu C.°, Sun W.-H.°, Li Z.°, Chen H.C., Wang J.-Y., Ji C.-M., Li S.-B., Wang Z.-W., Tsai W.-C., Ma X.-Q., Lan S.-R., Zhang F.-P., Xie Y.-C., Yao L., Zhang Y., Lü M.-M., Zhang J.-J., Zhang D.-Y., Ye Y;_Q., Yu X., Xu S.-S., Ma Z.-H., Ding G.-C., Cao G.-Q., He Z.-M., Wu P.-F., Lin K.-M., Liu A.-Q., Lin Y.-Q., Ruan S.-N., Liu B., Cao S.-J., Zhou L.-L., Li M., Shuai P., Hou X.-L., Wu Y.-H., Li N., Xiong S., Hao Y., Zhou Z., Liu X.-D., Zuo D.-D., Li J., Wang P., Zhang J., Liu D.-K., Chen G.-Z., Huang J., Huang M.-Z., Li Y.-Y., Zheng Q.-Y., Zhao X.-W., Zhao X., Zhong W.-Y., Zhang X.-W., Xia Z.-B., Yu Y., Liu Z.-W., Zheng H.-K., Ming R., Van de Peer Y. and Liu Z.-J.

(2026/06) - Cell Reports

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2397. Wounding activates the HSFA1 TFs to promote cellular reprogramming in Arabidopsis

Coleman D., Iwase A., Kawamura A., Takebayashi A., Chen Y., Minne M., Jager K.E., Peng M., Kodama Y., Favero D.S., Takahashi T., Ikeuchi M., Suzuki T., Ohama N., Yamaguchi-Shinozaki K., Wigge P.A., De Veylder L., Sugimoto K.

(2026/04) - The Plant Cell

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2396. Evolutionary adaptations to the hormonal regulation of vascular tissue development

Xiao W., Verhelst E., Yang L., Ke Y. and De Rybel B.

(2026/01) - Proc. Natl. Acad. Sci. U.S.A.

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2395. Evolution of protein domains and protein domain combinations provides insights into the origin and diversification of land plants

Jia-Yu Xue, Cheng-Ao Yang, Shuaiya Hu, Hai-Yun Fan, Yan-Mei Zhang, Zhu-Qing Shao, Linzhou Li, Sibo Wang, Tong Wei, Shanshan Dong, Yang Liu, Zhen Li, Yves Van de Peer

(2026/01) - Cell Genomics

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2394. Decoding the genome of Brainea insignis reveals insights into fern evolution and conservation

Zengqiang Xia, Lei Duan, Yuhan Fang, Yan Jiang, Hongfeng Chen, Yuehong Yan, Aihua Wang, Zixiang Li, Ziyue Liu, Guohua Zhao, Hui Shen, Yves Van de Peer, Ming Kang, Faguo Wang

(2026/01) - Nature Communications

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2393. Genetic architecture of the tomato fruit lipidome

Anastasiya Kuhalskaya, Xiang Li, Jeongah Lee, Itay Gonda, Julia von Steimker, Mustafa Bulut, Esra Karakas, Josef Fisher, Konrad Krämer, Leah Rosental, Micha Wijesingha Ahchige, Karolina Garbowicz, Annabella Klemmer, Anne-Kathrin Ruß, Andreas Donath, Alvaro Cuadros-Inostroza, Wout Boerjan, Denise M Tieman, Dani Zamir, Harry J Klee, Saleh Alseekh

(2026/01) - PNAS Nexus

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2392. The Nuclear Effector RIRG190 Interacts with SAS10 to Regulate Arbuscular Mycorrhizal Symbiosis

María Victoria Aparicio Chacón, Annick De Keyser, Naomi Stuer, Toon Leroy, Evi Ceulemans, Juan Antonio López-Ráez, Alain Goossens, Judith Van Dingenen, Sofie Goormachtig

(2025/12) - International Journal of Molecular Sciences

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2391. Endocytosis of the damage‐associated molecular pattern receptor PEPR1 is BAK1‐dependent

Lucas Alves Neubus Claus, Fausto Andres Ortiz‐Morea, Shao‐Li Yang, Shweta Yekondi, Xiangyu Xu, In‐Cheol Yeo, Isabelle Vanhoutte, Nemanja Vukašinović, Qian Ma, Ive De Smet, Ping He, Libo Shan, Eugenia Russinova

(2025/12) - Journal of Integrative Plant Biology

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2390. The Nuclear Effector RIRG190 Interacts with SAS10 to Regulate Arbuscular Mycorrhizal Symbiosis

María Victoria Aparicio Chacón, Annick De Keyser, Naomi Stuer, Toon Leroy, Evi Ceulemans, Juan Antonio López-Ráez, Alain Goossens, Judith Van Dingenen, Sofie Goormachtig

(2025/12) - International Journal of Molecular Sciences

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2389. An AINTEGUMENTA phosphoswitch controls bilateral stem cell activity during secondary growth

Wei Xiao, Ling Yang, Hengqi Ji, David Molina, Houming Chen, Shan Yu, Yingjing Miao, Dagmar Ripper, Shulin Deng, Martin Bayer, Bert De Rybel, Laura Ragni

(2025/11) - Proceedings of the National Academy of Sciences

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2388. Molecular mechanisms modulating beneficial plant root-microbe interactions: What’s common?

Juan Antonio Lopez-Raez, Joanna Banasiak, Manuel Becana, Sofie Goormachtig, Luisa Lanfranco, Estíbaliz Larrainzar, Benoit Lefebvre, Claire Veneault-Fourrey, Florian Frugier

(2025/11) - Plant Communications

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2387. A combined biochemical and computational approach provides evidence for membrane remodelling by the structural scaffold of the endocytic TPLATE complex

Julia M. Kraus, Michaela Neubergerová, Alvaro Furones Cuadrado, Neeltje Schilling, Dominique Eeckhout, Nancy De Winne, Eveline Van De Slijke, Michaël Vandorpe, Klaas Yperman, Evelien Mylle, Marcus Fislage, Geert De Jaeger, Roman Pleskot, Daniël Van Damme

(2025/11) - Nature Plants

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2386. Natural Variation of TaSG‐D1‐TaWRKY53 Module Regulates Heading Date in Wheat

Xingyuan Xi, Tong Zhu, Guangxian Cui, Yan Zhou, Baoyue Zhang, Haoran Qi, Hongjiao Jiang, Zhen Qin, Yumei Zhang, Huiru Peng, Yingyin Yao, Zhaorong Hu, Zhongfu Ni, Ive De Smet, Qixin Sun, Mingming Xin

(2025/11) - Plant Biotechnology Journal

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2385. The role of stress hormones in regulating tomato resilience and metabolism

Shivangini Jaryal, Sokol Toçilla, Krešimir Šola, Sara Selma García, Alain Goossens, Donald Ort

(2025/11) - Journal of Experimental Botany

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2384. Unlocking grass leaf development: foundations for tunable cereal design

Trisha McAllister, Hilde Nelissen, Josh Strable, Annis E. Richardson

(2025/11) - New Phytologist

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2383. Bryophytes hold a larger gene family space than vascular plants

Shanshan Dong, Sibo Wang, Linzhou Li, Jin Yu, Yongxia Zhang, Jia-Yu Xue, Hengchi Chen, Jianchao Ma, Yuying Zeng, Yuqing Cai, Wei Huang, Xuping Zhou, Jiayi Wu, Jianyou Li, Yifeng Yao, Ruoyang Hu, Tao Zhao, Juan Carlos Villarreal A, Leon Dirick, Li Liu, Michael Ignatov, Minghui Jin, Jue Ruan, Yikun He, Haifeng Wang, Bo Xu, Ricardo Rozzi, Jill Wegrzyn, Dennis William Stevenson, Karen S. Renzaglia, Hongfeng Chen, Li Zhang, Shouzhou Zhang, Roy Mackenzie, Javier E. Moreno, Michael Melkonian, Tong Wei, Ying Gu, Xun Xu, Stefan A. Rensing, Jinling Huang, Manyuan Long, Bernard Goffinet, John L. Bowman, Yves Van de Peer, Huan Liu, Yang Liu

(2025/10) - Nature Genetics

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2382. Gene expression divergence following gene and genome duplications in spatially resolved plant transcriptomes

Fabricio Almeida-Silva, Yves Van de Peer

(2025/10) - The Plant Cell

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2381. Multi-Omics Roadmap to Plant-Derived Medicines

Jia-Yu Xue, Si-Jie Liu, Jing Wang, Xin-Cheng Huang, Zhi-Chao Xu, Xiao-Xue Fang, Zhen Li, Yves Van de Peer

(2025/10) - Engineering

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2380. Resolving the Stasis-Dynamism Paradox: Genome Evolution in Tree Ferns

Zuoying Wei, Hengchi Chen, Chao Feng, Zengqiang Xia, Yves Van de Peer, Ming Kang, Jing Wang, Kelley Harris

(2025/10) - Molecular Biology and Evolution

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2379. Rose Bengal Is a Precise Pharmacological Tool Triggering Chloroplast‐Driven Programmed Cell Death in Plants, Dependent on Calcium and Mitochondria, and Associated With Early Transcriptional Reprogramming

Yasmine Jnaid, Rory Burke, Inge De Clercq, Joanna Kacprzyk, Paul F. McCabe

(2025/10) - Plant Direct

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2378. Evaluation of Transgenerational Gene Editing Efficiency and Inheritance of Edits Using a Split Cas9/gRNA Crossing System in Zea mays

Christian Damian Lorenzo, Lennert Impens, Matilde Sanches, Wout Vandeputte, Pieter Wytynck, Stijn Aesaert, Griet Coussens, Dirk Inzé, Hilde Nelissen, Laurens Pauwels

(2025/10) - Plant Biotechnology Journal

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2377. Gaseous Cues Regenerate the Periderm

Hassan Iqbal, Chen Yaning, Muhammad Waqas, Tom Beeckman, Ülo Niinemets, Christoph-Martin Geilfus

(2025/10) - Plant Communications

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2376. Comprehensive sampling from mitochondrial genomes substantiates the Neoproterozoic origin of land plants

Shuai-Ya Hu, Gongle Shi, Cheng-Ao Yang, Yves Van de Peer, Zhen Li, Jia-Yu Xue

(2025/09) - Plant Communications

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2375. Rapid establishment of species barriers in plants compared with that in animals

François Monnet, Zoé Postel, Pascal Touzet, Christelle Fraïsse, Yves Van de Peer, Xavier Vekemans, Camille Roux

(2025/09) - Science

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2374. AtCHE1, the Arabidopsis homolog of mammalian AATF/Che-1 protein, is involved in safeguarding genome stability

Fang Liu, Bingshan Wang, Xiangyang Wang, Daofeng Dong, Lieven De Veylder, Shengdong Qi, Beatrix M. Horvath, Klaus Palme, Xugang Li

(2025/09) - Communications Biology

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2373. Hydrogen sulfide and protein persulfidation in plant stress signaling

Mingjian Zhou, Yanjie Xie, Frank Van Breusegem, Jingjing Huang, Pierre Frendo

(2025/09) - Journal of Experimental Botany

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2372. Beyond CEN.PK - parallel engineering of selected S. cerevisiae strains reveals that superior chassis strains require different engineering approaches for limonene production

Yanmei Zhu, Sasha Yogiswara, Anke Willekens, Agathe Gérardin, Rob Lavigne, Alain Goossens, Vitor B. Pinheiro, Zongjie Dai, Kevin J. Verstrepen

(2025/09) - Metabolic Engineering

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2371. Plant metabolism: Zoom in to the single-cell level

Nikolaos Ntelkis, C Robin Buell, Alain Goossens

(2025/09) - Plant Physiology

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2370. SlBBX26 regulates vegetative growth, flowering and fruit development through the modulation of SlPIF4

Juliene dos Reis Moreira, Lumi Shiose, Bruno Silvestre Lira, Gabriel Ponciano, Raquel Tsu Ay Wu, Mateus Henrique Vicente, Maria José Oliveira, Diego Demarco, Fabio Tebaldi Silveira Nogueira, Alain Goossens, Luciano Freschi, Magdalena Rossi

(2025/09) - Plant Physiology and Biochemistry

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2369. High-throughput screening assay for nitrification inhibitors and the discovery of goitrin as a biological nitrification inhibitor

Fabian Beeckman, Andrzej Drozdzecki, Alexa De Knijf, Dominique Audenaert, Tom Beeckman, Hans Motte

(2025/09) - Journal of Microbiological Methods

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2368. Marker-assisted in vivo imaging reveals prepatterning events prior to lateral root organogenesis

Hugues De Gernier, Yuanming Xie, Asma Dob, Wei Xuan, Tom Beeckman

(2025/09) - Plant Physiology

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2367. The endocycle regulators SIM and CCS52A1 control Arabidopsis root hair cell ploidy and expansion

Lei Li (李磊), Klaus Herburger, Ilse Vercauteren, Duncan Coleman, Qian Wang, Steven Maere, Jefri Heyman, Lieven De Veylder

(2025/08) - Plant Physiology

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2366. Going bananas: how transgene‐free editing is contributing to a fruitful future

Lennart Hoengenaert, Chantal Anders, Wout Boerjan

(2025/08) - New Phytologist

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2365. Catalytic conversion of lignocellulose to naphtha: Unlocking sustainable pathways to renewable fuel for engines and feedstock for polymers

Hannes Latine, Jannes Deprez, Thomas Nicolaï, Christophe M. Courtin, Wout Boerjan, Thatiane R. Mota, Sebastian Verhelst, Tom Robeyn, Kevin M. Van Geem, Oleksii Mynko, Florence H. Vermeire, Bert F. Sels

(2025/08) - Chemical Engineering Journal

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2364. The endocycle regulators SIM and CCS52A1 control Arabidopsis root hair cell ploidy and expansion

Lei Li (李磊), Klaus Herburger, Ilse Vercauteren, Duncan Coleman, Qian Wang, Steven Maere, Jefri Heyman, Lieven De Veylder

(2025/08) - Plant Physiology

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2363. Fast track to environmentally adapted rhizobia for growing soybean at northern latitudes using citizen science

Sonia García Méndez, Stien Mertens, Arne Temmerman, Helena Van den Eynde, Margo Vermeersch, Lena Vlaminck, Olivier Berteloot, Judith Van Dingenen, Alexander Clarysse, Annick De Keyser, Serge Beullens, Ilse de Baenst, Niranjana Roy, Quinten De Paepe, Jan Michiels, Isabel Roldan-Ruiz, Joke Pannecoucque, Anne Willems, Steven Maere, Sofie Goormachtig

(2025/08) - The ISME Journal

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2362. Engineering Gypsophila elegans hairy root cultures to produce endosomal escape‐enhancing saponins

Elia Lacchini, Tongtong Qu, Tessa Moses, Alexander N. Volkov, Alain Goossens

(2025/08) - Plant Biotechnology Journal

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2361. KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death

Nicolas M Doll, Yannick Fierlej, Thomas Eekhout, Lisa Elias, Clément Bellot, Geng Sun, Carolin Grones, Stijn Aesaert, Griet Coussens, Riet De Rycke, Maria Šimášková, Emilie Montes, Chloé Plagnard, Peter M Rogowsky, Yemisrach Melkie Abebaw, Mohammed Bendahmane, Bert De Rybel, Laurens Pauwels, Thomas Widiez, Moritz K Nowack

(2025/07) - The Plant Cell

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2360. Genome analyses provide insights into Engelhardia’s adaptation to East Asia summer monsoon

Min Li, Jing-Jing Wu, Ren-Ping Su, Ou-Yan Fang, Xiang Cai, Pei-Han Huang, Xiao-Yang Gao, Xin-Xing Fu, Xiao-Hui Ma, Lin-Yue He, Yi-Gang Song, Guo-Xiong Hu, Shi-Shun Zhou, Yun-Hong Tan, Yves Van de Peer, Jie Li, Sheng-Dan Wu, Hong-Hu Meng

(2025/07) - Plant Diversity

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2359. The subordinate role of pseudogenization to recombinative deletion following polyploidization in angiosperms

Ewout Crombez, Yves Van de Peer, Zhen Li

(2025/07) - Nature Communications

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2358. Subgenome Partitioning and Polyploid Genome Evolution in the Loach Family Botiidae (Order Cypriniformes)

Yunyun Lv, Jia Li, Yanping Li, Yu Huang, Qiang Lai, Zhengyong Wen, Jun Wang, Yang He, Jinrong Shi, Zejin Huang, Ying Jiang, Yves Van de Peer, Qiong Shi, Biwen Xie, Yongming Wang

(2025/07) - Advanced Science

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2357. Polyploid—Diploid coexistence in the greater duckweed Spirodela polyrhiza

Frederik Mortier, Yves Van de Peer, Dries Bonte

(2025/07) - Journal of Ecology

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2356. E2FA is a major transcription factor controlling the mitotic cycle and the endocycle in nematode‐induced feeding sites

Danila Cabral, José Dijair Antonino, José Lozano, Kércya Simões de Siqueira, Xinrong Wang, Geert Smant, Gilbert Engler, Lieven De Veylder, Janice de Almeida Engler

(2025/07) - New Phytologist

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2355. Cytosolic Monodehydroascorbate Reductase 2 Promotes Oxidative Stress Signaling in Arabidopsis

Dongdong Xu, Lug Trémulot, Zheng Yang, Amna Mhamdi, Gilles Châtel‐Innocenti, Laura Mathieu, Christophe Espinasse, Frank Van Breusegem, Hélène Vanacker, Emmanuelle Issakidis‐Bourguet, Graham Noctor

(2025/07) - Plant, Cell & Environment

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2354. Transgene‐free genome editing in poplar

Lennart Hoengenaert, Chantal Anders, Jan Van Doorsselaere, Ruben Vanholme, Wout Boerjan

(2025/07) - New Phytologist

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2353. KIL transcription factors facilitate embryo growth in maize by promoting endosperm elimination via lytic cell death

Nicolas M Doll, Yannick Fierlej, Thomas Eekhout, Lisa Elias, Clément Bellot, Geng Sun, Carolin Grones, Stijn Aesaert, Griet Coussens, Riet De Rycke, Maria Šimášková, Emilie Montes, Chloé Plagnard, Peter M Rogowsky, Yemisrach Melkie Abebaw, Mohammed Bendahmane, Bert De Rybel, Laurens Pauwels, Thomas Widiez, Moritz K Nowack

(2025/07) - The Plant Cell

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2352. Characterization of the Protein Interactome of Membrane-Bound Transcription Factors Using TurboID-Based Proximity Labeling in Planta

Jonas De Backer, Lindsy De Veirman, Inge De Clercq

(2025/07) - Methods in Molecular Biology

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2351. A top HAT: A maize mutant hypersusceptible to Agrobacterium transformation

Catherine M. Doorly, Wout Vandeputte, Inge De Clercq, Laurens Pauwels

(2025/07) - Molecular Plant

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2350. TaIRE1‐mediated unconventional splicing of the TabZIP60 mRNA and the miR172 precursor regulates heat stress tolerance in wheat

Haoran Li, Zhen Qin, Xiaoli Geng, Jie Cao, Xinyang Yuan, Huiru Peng, Yingyin Yao, Zhaorong Hu, Weilong Guo, Yumei Zhang, Jie Liu, Vincenzo Rossi, Ive De Smet, Zhongfu Ni, Qixin Sun, Mingming Xin

(2025/07) - Journal of Integrative Plant Biology

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2349. TaSG‐D1–TaGAMyb signaling module regulates seed weight in wheat (Triticum aestivum L.)

Yan Zhou, Guangxian Cui, Shijun Wei, Xingyuan Xi, Jiaqi Zhang, Hongjiao Jiang, Jie Cao, Baoyue Zhang, Yumei Zhang, Huiru Peng, Yingyin Yao, Zhaorong Hu, Zhongfu Ni, Ive De Smet, Qixin Sun, Mingming Xin

(2025/07) - The Plant Journal

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2348. Warm temperature modifies cell fates to reduce stomata production in Arabidopsis

Josué Saiz‐Pérez, Alexandra Baekelandt, Jonatan Illescas‐Miranda, Lieven Sterck, Marnik Vuylsteke, Eun‐Ji Kim, Boyu Guo, Bénédicte Desvoyes, Crisanto Gutierrez, Eugenia Russinova, Carmen Fenoll, Montaña Mena

(2025/07) - New Phytologist

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2347. The maize aquaporin ZmPIP1;6 enhances stomatal opening and CO2- and ABA-induced stomatal closure

Lei Ding, Maxime J Laurent, Thomas Milhiet, Stijn Aesaert, Mieke Van Lijsebettens, Laurens Pauwels, Hilde Nelissen, Dirk Inzé, François Chaumont, Tracy Lawson

(2025/07) - Journal of Experimental Botany

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2346. A BAC-guided haplotype assembly pipeline increases the resolution of the virus resistance locus CMD2 in cassava

Luc Cornet, Syed Shan-e-Ali Zaidi, Jia Li, Yvan Ngapout, Sara Shakir, Loic Meunier, Caroline Callot, William Marande, Marc Hanikenne, Stephane Rombauts, Yves Van de Peer, Hervé Vanderschuren

(2025/06) - Genome Biology

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2345. Single-cell transcriptomics reveal how root tissues adapt to soil stress

Mingyuan Zhu, Che-Wei Hsu, Lucas L. Peralta Ogorek, Isaiah W. Taylor, Salvatore La Cavera, Dyoni M. Oliveira, Lokesh Verma, Poonam Mehra, Medhavinee Mijar, Ari Sadanandom, Fernando Perez-Cota, Wout Boerjan, Trevor M. Nolan, Malcolm J. Bennett, Philip N. Benfey, Bipin K. Pandey

(2025/06) - Nature

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2344. The burning glass effect of water droplets triggers a high light-induced calcium response in the chloroplast stroma

Dominic Kuang, Shanna Romand, Anna S. Zvereva, Bianca Maria Orlando Marchesano, Matteo Grenzi, Stefano Buratti, Qun Yang, Ke Zheng, Dimitra Valadorou, Evelien Mylle, Zuzana Benedikty, Martin Trtílek, Maria Tenje, Cornelia Spetea, daniel van damme, Bernhard Wurzinger, Markus Schwarzländer, Markus Teige, Alex Costa, Simon Stael

(2025/06) - Current Biology

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2343. Plant steroids on the move: mechanisms of brassinosteroid export

Zi-Liang Hu, Hong Wei, Linfeng Sun, Eugenia Russinova

(2025/06) - Trends in Biochemical Sciences

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2342. Modulating the activity of the APC/C regulator SISAMBA improves the sugar and antioxidant content of tomato fruits

Perla Novais de Oliveira, Leonardo Perez de Souza, Pedro Boscariol Ferreira, Jean Phillippe Mauxion, Luis Felipe Correa da Silva, Ana Isabela Chang, Marina de Lyra Soriano Saleme, Feng Zhu, Sara Selma García, Herman De Beukelaer, Marina C. M. Martins, Laise Rosado‐Souza, Lilian Ellen Pino, Norbert Bollier, Lázaro Eustáquio Pereira Peres, Klaas Vandepoele, Alain Goossens, Nathalie Gonzalez, Alisdair R. Fernie, Nubia Barbosa Eloy

(2025/06) - Plant Biotechnology Journal

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2341. Consolidating Ulva functional genomics: gene editing and new selection systems

Jonas Blomme, Júlia Arraiza Ribera, Olivier De Clerck, Thomas B. Jacobs

(2025/05) - New Phytologist

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2340. Dual and spatially resolved drought responses in the Arabidopsis leaf mesophyll revealed by single‐cell transcriptomics

Rubén Tenorio Berrío, Eline Verhelst, Thomas Eekhout, Carolin Grones, Lieven De Veylder, Bert De Rybel, Marieke Dubois

(2025/05) - New Phytologist

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2339. Expanding the toolkit for ploidy manipulation in Chlamydomonas reinhardtii

Antoine Van de Vloet, Lucas Prost‐Boxoen, Quinten Bafort, Yunn Thet Paing, Griet Casteleyn, Lucile Jomat, Stéphane D. Lemaire, Olivier De Clerck, Yves Van de Peer

(2025/05) - New Phytologist

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2338. Purification and characterization of the intrinsically disordered Arabidopsis thaliana protein SOG1

Kim Mignon, Margot Galle, Rani Van der Eecken, Sarah Haesaerts, Manon Demulder, Henri De Greve, Lieven De Veylder, Remy Loris

(2025/05) - Protein Expression and Purification

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2337. Dual and spatially resolved drought responses in the Arabidopsis leaf mesophyll revealed by single‐cell transcriptomics

Rubén Tenorio Berrío, Eline Verhelst, Thomas Eekhout, Carolin Grones, Lieven De Veylder, Bert De Rybel, Marieke Dubois

(2025/05) - New Phytologist

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2336. CRISPR/Cas9 editing of p-COUMAROYL-CoA:MONOLIGNOL TRANSFERASE 1 in maize alters phenolic metabolism, lignin structure, and lignin-first biomass processing

Dyoni M. Oliveira, Marina de L.S. Saleme, Rebecca A. Smith, Thijs Vangeel, Marcelo de F. Lima, Alexandra A. Chanoca, Thatiane R. Mota, Yasmine Vanhevel, Griet Coussens, Korneel Van Aelst, Jordi Geerts, Iris Cornet, Dries Vaneechoutte, Klaas Vandepoele, Laurens Pauwels, Geert Goeminne, Kris Morreel, Bert F. Sels, John Ralph, Ruben Vanholme, Wout Boerjan

(2025/05) - Trends in Biotechnology

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2335. Serratia marcescens Strain VIRS2 Isolated from Saline Soil Enhances Rice Growth and Salt Tolerance

Tuong M. Ho, Manh V. Le, Ha H. T. Nguyen, Quyen Phan, Thao P. Bui, Linh K. Ly, Van B. Lam, Michiel Vandecasteele, Sofie Goormachtig, Ha H. Chu, Phat T. Do

(2025/05) - Microbiology Research

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2334. Hygrometrically controlled programmed cell death drives anther opening and pollen release

Anna Kampová, Moritz K. Nowack, Matyáš Fendrych, Stanislav Vosolsobě

(2025/05) - Proceedings of the National Academy of Sciences

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2333. Challenges of translating Arabidopsis insights into crops

Cristóbal Uauy, Hilde Nelissen, Raquel Lía Chan, Johnathan A Napier, David Seung, Linsan Liu, Sarah M McKim

(2025/05) - The Plant Cell

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2332. Going bananas: how transgene‐free editing is contributing to a fruitful future

Lennart Hoengenaert, Chantal Anders, Wout Boerjan

(2025/04) - New Phytologist

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2331. Intrinsic cues guiding changes in division orientation in the Arabidopsis root meristem: a formative experience

Nataliia Konstantinova, Claudia von der Mark, Bert De Rybel

(2025/04) - Journal of Experimental Botany

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2330. Comparative transcriptomics in ferns reveals key innovations and divergent evolution of the secondary cell walls

Zahin Ali, Qiao Wen Tan, Peng Ken Lim, Hengchi Chen, Lukas Pfeifer, Irene Julca, Jia Min Lee, Birgit Classen, Sophie de Vries, Jan de Vries, Fanny Vinter, Camille Alvarado, Amandine Layens, Eshchar Mizrachi, Mohammed Saddik Motawie, Bodil Joergensen, Peter Ulvskov, Yves Van de Peer, Boon Chuan Ho, Richard Sibout, Marek Mutwil

(2025/04) - Nature Plants

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2329. Water lily pond: a multiomics database for water lilies

Chengjun Zhao, Ji Zhang, Yayu Chen, Lishuang Yang, Hongliang Chen, Yufan Liang, Wenquan Wang, Shuang He, Yunqing Luo, Junyu Zhang, Hongbin Zhang, Shuting Yang, Guilian Guo, Wenbai Dai, Zhijuan Yang, Junhao Chen, Yuhan Zhou, Wasi Ullah Khan, Guanhua Liu, Yifan Jiang, Tianlong Zhu, Yingchun Xu, Pedro García-Caparros, Yves Van de Peer, Jia-yu Xue, Chengjie Chen, Liangsheng Zhang, Fei Chen

(2025/04) - Horticulture Research

DOI
2328. SOI: robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Ren-Gang Zhang, Hong-Yun Shang, Richard Ian Milne, Fabricio Almeida-Silva, Hengchi Chen, Min-Jie Zhou, Heng Shu, Kai-Hua Jia, Yves Van de Peer, Yong-Peng Ma

(2025/04) - Nucleic Acids Research

DOI
2327. Folate depletion impact on the cell cycle results in restricted primary root growth in Arabidopsis

Jolien De Lepeleire, Ratnesh Chandra Mishra, Jana Verstraete, Jose Antonio Pedroza Garcia, Christophe Stove, Lieven De Veylder, Dominique Van Der Straeten

(2025/04) - Plant Molecular Biology

DOI
2326. Parental shade stress increases Arabidopsis seed viability by modifying the phenolic hydrophobic barrier in the seed coats

Juncai Deng, Wenyu Yang, Ans Van der Vaet, Jacob Pollier, Ruben Vanholme, Wout Boerjan, Jiang Liu, Bartel Vanholme

(2025/04) - Environmental and Experimental Botany

DOI
2325. Using reciprocally retained gene families to detect whole-genome multiplications in plants

Setareh Tasdighian, Cecilia Sensalari, Steven Maere

(2025/04) -

DOI
2324. The dynamic and diverse nature of parenchyma cells in the Arabidopsis root during secondary growth

Munan Lyu, Hiroyuki Iida, Thomas Eekhout, Meeri Mäkelä, Sampo Muranen, Lingling Ye, Anne Vatén, Brecht Wybouw, Xin Wang, Bert De Rybel, Ari Pekka Mähönen

(2025/03) - Nature Plants

DOI
2323. Lack of AtMC1 catalytic activity triggers autoimmunity dependent on NLR stability

Jose Salguero-Linares, Laia Armengot, Joel Ayet, Nerea Ruiz-Solaní, Svenja C Saile, Marta Salas-Gómez, Esperanza Fernandez, Lode Denolf, Fernando Navarrete, Jenna Krumbach, Markus Kaiser, Simon Stael, Frank Van Breusegem, Kris Gevaert, Farnusch Kaschani, Morten Petersen, Farid El Kasmi, Marc Valls, Núria S Coll

(2025/03) - EMBO Reports

DOI
2322. Effects of feruloyl-CoA 6′-hydroxylase 1 overexpression on lignin and cell wall characteristics in transgenic hybrid aspen

Naning Wang, Masatsugu Takada, Shingo Sakamoto, Ruben Vanholme, Geert Goeminne, Hoon Kim, Soichiro Nagano, Naoki Takata, Naofumi Kamimura, Mikiko Uesugi, Akiko Izumi-Nakagawa, Eiji Masai, Nobutaka Mitsuda, Wout Boerjan, John Ralph, Shinya Kajita

(2025/03) - Frontiers in Plant Science

DOI
2321. Virus‐Induced Gene Silencing as a Powerful Tool for Functional Analysis of Nodulation In Soybean

Sylwia Struk, Brent Van Damme, Seung Hyun Yang, Kris Gevaert, Sofie Goormachtig, Feng Qu

(2025/03) - Plant, Cell & Environment

DOI
2320. Integrative approaches to enhance reproductive resilience of crops for climate-proof agriculture

Ive De Smet

(2025/03) - Plant Stress

DOI
2319. Large-scale comparative wheat phosphoproteome profiling reveals temperature-associated molecular signatures in wheat

Cássio Flávio Fonseca de Lima, Tingting Zhu, Lisa Van den Broeck, Brigitte Van De Cotte, Anna M Locke, Rosangela Sozzani, Ive De Smet

(2025/03) - Plant Physiology

DOI
2318. Editorial: XVII SOLANACEAE2022 meets the 2020 decade challenges

Ifigeneia Mellidou, Antonio Granell, Hiroshi Ezura, Panagiotis Kalaitzis, Nathalie Gonzalez, Alain Goossens, Mondher Bouzayen, Angelos K. Kanellis

(2025/03) - Frontiers in Plant Science

DOI
2317. The multifaceted role of auxin in root growth and branching: Insights from non‐seed vascular plants

Ward Poelmans, Tom Beeckman, Abdellah Lakehal

(2025/03) - Physiologia Plantarum

DOI
2316. A single-cell and spatial wheat root atlas with cross-species annotations delineates conserved tissue-specific marker genes and regulators

Yuji Ke, Vincent Pujol, Jasper Staut, Lotte Pollaris, Ruth Seurinck, Thomas Eekhout, Carolin Grones, Maite Saura-Sanchez, Michiel Van Bel, Marnik Vuylsteke, Andrea Ariani, Christophe Liseron-Monfils, Klaas Vandepoele, Yvan Saeys, Bert De Rybel

(2025/02) - Cell Reports

DOI
2315. doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio Almeida-Silva, Yves Van de Peer

(2025/02) - Bioinformatics

DOI
2314. Molecular fingerprints of cell size sensing and mating type differentiation in pennate diatoms

Darja Belišová, Gust Bilcke, Sien Audoor, Sofie D'hondt, Lieven De Veylder, Klaas Vandepoele, Wim Vyverman

(2025/02) - New Phytologist

DOI
2313. Exploring the Tomato Root Protein Network Exploited by Core Type 3 Effectors from the Ralstonia solanacearum Species Complex

Joren De Ryck, Veronique Jonckheere, Brigitte De Paepe, Annick De Keyser, Nemo Peeters, Johan Van Vaerenbergh, Jane Debode, Petra Van Damme, Sofie Goormachtig

(2025/02) - Journal of Proteome Research

DOI
2312. About How Nitrate Controls Nodulation: Will Soybean Spill the Bean?

E. Guillierme, K. Gevaert, S. Goormachtig, S. Struk

(2025/02) - Plant, Cell & Environment

DOI
2311. Reduced RG-II pectin dimerization disrupts differential growth by attenuating hormonal regulation

Pawan Kumar Jewaria, Bibek Aryal, Rifat Ara Begum, Yaowei Wang, Gloria Sancho-Andrés, Abu Imran Baba, Meng Yu, Xiaojuan Li, Jinxing Lin, Stephen C. Fry, Stephane Verger, Eugenia Russinova, Kristoffer Jonsson, Rishikesh P. Bhalerao

(2025/02) - Science Advances

DOI
2310. Unlocking saponin biosynthesis in soapwort

Seohyun Jo, Amr El-Demerdash, Charlotte Owen, Vikas Srivastava, Dewei Wu, Shingo Kikuchi, James Reed, Hannah Hodgson, Alex Harkess, Shengqiang Shu, Chris Plott, Jerry Jenkins, Melissa Williams, Lori-Beth Boston, Elia Lacchini, Tongtong Qu, Alain Goossens, Jane Grimwood, Jeremy Schmutz, Jim Leebens-Mack, Anne Osbourn

(2025/02) - Nature Chemical Biology

DOI
2309. The selective estrogen receptor modulator clomiphene inhibits sterol biosynthesis in Arabidopsis thaliana

Qing Wang, Kjell De Vriese, Sandrien Desmet, Ren Wang, Markéta Luklová, Qianqian Liu, Jacob Pollier, Qing Lu, Sarah Schlag, Walter Vetter, Alain Goossens, Eugenia Russinova, Geert Goeminne, Danny Geelen, Tom Beeckman, Steffen Vanneste

(2025/02) - Journal of Experimental Botany

DOI
2308. Division Zone Activity Determines the Potential of Drought‐Stressed Maize Leaves to Resume Growth after Rehydration

Tom Van Hautegem, Hironori Takasaki, Christian Damian Lorenzo, Kirin Demuynck, Hannes Claeys, Timothy Villers, Heike Sprenger, Kevin Debray, Dries Schaumont, Lennart Verbraeken, Julie Pevernagie, Julie Merchie, Bernard Cannoot, Stijn Aesaert, Griet Coussens, Kazuko Yamaguchi‐Shinozaki, Michael L. Nuccio, Frédéric Van Ex, Laurens Pauwels, Thomas B. Jacobs, Tom Ruttink, Dirk Inzé, Hilde Nelissen

(2025/02) - Plant, Cell & Environment

DOI
2307. The selective estrogen receptor modulator clomiphene inhibits sterol biosynthesis in Arabidopsis thaliana

Qing Wang, Kjell De Vriese, Sandrien Desmet, Ren Wang, Markéta Luklová, Qianqian Liu, Jacob Pollier, Qing Lu, Sarah Schlag, Walter Vetter, Alain Goossens, Eugenia Russinova, Geert Goeminne, Danny Geelen, Tom Beeckman, Steffen Vanneste

(2025/02) - Journal of Experimental Botany

DOI
2306. Transgene‐free genome editing in poplar

Lennart Hoengenaert, Chantal Anders, Jan Van Doorsselaere, Ruben Vanholme, Wout Boerjan

(2025/01) - New Phytologist

DOI
2305. Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

Lucas Prost‐Boxoen, Quinten Bafort, Antoine Van de Vloet, Fabricio Almeida‐Silva, Yunn Thet Paing, Griet Casteleyn, Sofie D'hondt, Olivier De Clerck, Yves Van de Peer

(2025/01) - New Phytologist

DOI
2304. Novel adaptive immune systems in pristine Antarctic soils

Marc W. Van Goethem, Oliver K. I. Bezuidt, Rian Pierneef, Surendra Vikram, David W. Hopkins, Thomas Aspray, Grant Hall, Stephan Woodborne, Ian D. Hogg, Trent R. Northen, Weidong Kong, Daniele Daffonchio, Don A. Cowan, Yves Van de Peer, Manuel Delgado-Baquerizo, Thulani P. Makhalanyane

(2025/01) - Scientific Reports

DOI
2303. Flavonoids and anthocyanins in seagrasses: implications for climate change adaptation and resilience

Jana Botes, Xiao Ma, Jiyang Chang, Yves Van de Peer, Dave Kenneth Berger

(2025/01) - Frontiers in Plant Science

DOI
2302. Deciphering the biosynthetic pathway of triterpene saponins in Prunella vulgaris

Si‐Jie Liu, Zhengtai Liu, Bing‐Yan Shao, Tao Li, Xinning Zhu, Ren Wang, Lei Shi, Sheng Xu, Yves Van de Peer, Jia‐Yu Xue

(2025/01) - The Plant Journal

DOI
2301. The nuclear sulfenome of Arabidopsis: spotlight on histone acetyltransferase GCN5 regulation through functional thiols

Barbara De Smet, Xi Yang, Zuzana Plskova, Carmen Castell, Alvaro Fernández-Fernández, Avilien Dard, Jan Masood, Amna Mhamdi, Jingjing Huang, Didier Vertommen, Kai Xun Chan, Sébastien Pyr dit Ruys, Joris Messens, Pavel I Kerchev, Frank Van Breusegem

(2025/01) - Journal of Experimental Botany

DOI
2300. A case for absolute gene expression estimates in microbiome studies using metatranscriptomics

Michiel Perneel, Harriet Alexander, Pascal I Hablützel, Steven Maere

(2025/01) - The ISME Journal

DOI
2299. Legume-specific recruitment of rhizobia by hyphae of arbuscular mycorrhizal fungi

Jiadong He, Judith Van Dingenen, Sofie Goormachtig, Maryline Calonne-Salmon, Stéphane Declerck

(2025/01) - The ISME Journal

DOI
2298. Pupylation-based proximity labeling reveals regulatory factors in cellulose biosynthesis in Arabidopsis

Shuai Zheng, Lise C. Noack, Ouda Khammy, Andreas De Meyer, Ghazanfar Abbas Khan, Nancy De Winne, Dominique Eeckhout, Daniël Van Damme, Staffan Persson

(2025/01) - Nature Communications

DOI
2297. Stomatal opening under high temperatures is controlled by the OST1-regulated TOT3–AHA1 module

Xiangyu Xu, Hongyan Liu, Myrthe Praat, Gaston A. Pizzio, Zhang Jiang, Steven Michiel Driever, Ren Wang, Brigitte Van De Cotte, Selwyn L. Y. Villers, Kris Gevaert, Nathalie Leonhardt, Hilde Nelissen, Toshinori Kinoshita, Steffen Vanneste, Pedro L. Rodriguez, Martijn van Zanten, Lam Dai Vu, Ive De Smet

(2025/01) - Nature Plants

DOI
2296. Structural insights into brassinosteroid export mediated by the Arabidopsis ABC transporter ABCB1

Hong Wei, Heyuan Zhu, Wei Ying, Hilde Janssens, Miroslav Kvasnica, Johan M. Winne, Yongxiang Gao, Jiří Friml, Qian Ma, Shutang Tan, Xin Liu, Eugenia Russinova, Linfeng Sun

(2025/01) - Plant Communications

DOI
2295. Stomatal opening under high temperatures is controlled by the OST1-regulated TOT3–AHA1 module

Xiangyu Xu, Hongyan Liu, Myrthe Praat, Gaston Pizzio, Zhang Jiang, S.M. Driever, Ren Wang, Brigitte Van De Cotte, Selwyn L. Y. Villers, Kris Gevaert, Nathalie Leonhardt, Hilde Nelissen, Toshinori Kinoshita, Steffen Vanneste, Pedro L. Rodriguez, Martijn van Zanten, Lam Dai Vu, Ive De Smet

(2025/01) - Nature Plants

DOI
2294. The winner’s curse under dependence: repairing empirical Bayes using convoluted densities

Stijn Hawinkel, Olivier Thas, Steven Maere

(2024/12) - Biostatistics

DOI
2293. Identifying receptor-like kinases that enable Caulobacter RHG1 to promote plant growth in Arabidopsis thaliana

Amber Lampens, Michiel Vandecasteele, Marjon Braem, Viktor Devlieghere, Judith Van Dingenen, Kris Gevaert, Sofie Goormachtig

(2024/12) - Journal of Plant Interactions

DOI
2292. From ion transport to stress resilience: insights from CAX mutant trichomes

Inge De Clercq

(2024/12) - Plant And Cell Physiology

DOI
2291. ConsolidatingUlvafunctional genomics: Gene editing and new selection systems

Jonas Blomme, Júlia Arraiza Ribera, Olivier De Clerck, Thomas B. Jacobs

(2024/11) -

DOI
2290. SPL13 controls a root apical meristem phase change by triggering oriented cell divisions

Baojun Yang, Yanbiao Sun, Max Minne, Yanhua Ge, Qianru Yue, Vera Goossens, Eliana Mor, Brenda Callebaut, Kevin Bevernaege, Johan M. Winne, Dominique Audenaert, Bert De Rybel

(2024/11) - Science

DOI
2289. The stem cell niche transcription factor ETHYLENE RESPONSE FACTOR 115 participates in aluminum‐induced terminal differentiation in Arabidopsis roots

Paul B. Larsen, Shiyang He, Taylor J. Meyer, Miriam Szurman‐Zubrzycka, Carolin Alfs, Jolanta Kwasniewska, Alexandra Pervis, Monika Gajecka, Aishwarya Veerabahu, Taylor R. Beaulieu, Stephen C. Bolaris, Thomas Eekhout, Lieven De Veylder, Steffen Abel, Iwona Szarejko, Jernej Murn

(2024/11) - Plant, Cell & Environment

DOI
2288. The Rise of Polyploids During Environmental Upheaval

Hengchi Chen, Fabricio Almeida-Silva, Garben Logghe, Steven Maere, Dries Bonte, Yves Van de Peer

(2024/11) -

DOI
2287. Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana

Nyasha Charura, Ernesto Llamas, Concetta De Quattro, David Vilchez, Moritz K Nowack, Alga Zuccaro

(2024/11) - eLife

DOI
2286. A nitrogen‐responsive cytokinin oxidase/dehydrogenase regulates root response to high ammonium in rice

Lun Li, Letian Jia, Xingliang Duan, Yuanda Lv, Chengyu Ye, Chengqiang Ding, Yuwen Zhang, Weicong Qi, Hans Motte, Tom Beeckman, Le Luo, Wei Xuan

(2024/11) - New Phytologist

DOI
2285. Dosage sensitivity shapes balanced expression and gene longevity of homoeologs after whole-genome duplications in angiosperms

Tao Shi, Zhiyan Gao, Jinming Chen, Yves Van de Peer

(2024/10) - The Plant Cell

DOI
2284. ERFVII‐controlled hypoxia responses are in part facilitated by MEDIATOR SUBUNIT 25 in Arabidopsis thaliana

Jozefus Schippers, Kira von Bongartz, Lisa Laritzki, Stephanie Frohn, Stephanie Frings, Tilo Renziehausen, Frauke Augstein, Katharina Winkels, Katrien Sprangers, Rashmi Sasidharan, Didier Vertommen, Frank Van Breusegem, Sjon Hartman, Gerrit Beemster, Amna Mhamdi, Joost T. van Dongen, Romy Schmidt-Schippers

(2024/10) - The Plant Journal

DOI
2283. Extracellular vesicles of Norway spruce contain precursors and enzymes for lignin formation and salicylic acid

Santeri Kankaanpää, Enni Väisänen, Geert Goeminne, Rabah Soliymani, Sandrien Desmet, Anatoliy Samoylenko, Seppo Vainio, Gunnar Wingsle, Wout Boerjan, Ruben Vanholme, Anna Kärkönen

(2024/10) - Plant Physiology

DOI
2282. A novel Microbacterium strain SRS2 promotes the growth of Arabidopsis and MicroTom (S. lycopersicum) under normal and salt stress conditions

Ho Manh Tuong, Sonia García Méndez, Michiel Vandecasteele, Anne Willems, Anelia Iancheva, Pham Bich Ngoc, Do Tien Phat, Chu Hoang Ha, Sofie Goormachtig

(2024/10) - Planta

DOI
2281. Cell type-specific control and post-translational regulation of specialized metabolism: opening new avenues for plant metabolic engineering

Nikolaos Ntelkis, Alain Goossens, Krešimir Šola

(2024/10) - Current Opinion in Plant Biology

DOI
2280. Maize mutant screens: from classical methods to new CRISPR‐based approaches

Christian Damian Lorenzo, David Blasco‐Escámez, Arthur Beauchet, Pieter Wytynck, Matilde Sanches, Jose Rodrigo Garcia del Campo, Dirk Inzé, Hilde Nelissen

(2024/10) - New Phytologist

DOI
2279. SnRK1/TOR/T6P: three musketeers guarding energy for root growth

Stefania Morales-Herrera, Matthew J. Paul, Patrick Van Dijck, Tom Beeckman

(2024/10) - Trends in Plant Science

DOI
2278. Scywalker: Scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems, Lara De Deyn, Lena Duchateau, Carolin Grones, Thomas Eekhout, Tim De Pooter, Geert Joris, Stephane Rombauts, Bert De Rybel, Rosa Rademakers, Frank Van Breusegem, Mojca Strazisar, Kristel Sleegers, Wouter De Coster

(2024/09) - Bioinformatics

DOI
2277. Scywalker: Scalable end-to-end data analysis workflow for long-read single-cell transcriptome sequencing

Peter De Rijk, Tijs Watzeels, Fahri Küçükali, Jasper Van Dongen, Júlia Faura, Patrick Willems, Lara De Deyn, Lena Duchateau, Carolin Grones, Thomas Eekhout, Tim De Pooter, Geert Joris, Stephane Rombauts, Bert De Rybel, Rosa Rademakers, Frank Van Breusegem, Mojca Strazisar, Kristel Sleegers, Wouter De Coster

(2024/09) - Bioinformatics

DOI
2276. Do seasons impact the root microbiome of wild Poa annua populations?

Sonia Garcia Mendez, Stephanie Fordeyn, Caroline De Tender, Sofie Goormachtig, Anne Willems

(2024/09) - Rhizosphere

DOI
2275. Root cap cell corpse clearance limits microbial colonization in Arabidopsis thaliana

Nyasha Marie Charura, Ernesto Llamas, Concetta De Quattro, David Vilchez, Moritz Nowack, Alga Zuccaro

(2024/09) - eLife

DOI
2274. Unlocking protein–protein interactions in plants: a comprehensive review of established and emerging techniques

Alvaro Furones Cuadrado, Daniël Van Damme, Martin Janda

(2024/09) - Journal of Experimental Botany

DOI
2273. Cell wall‐mediated maternal control of apical–basal patterning of the kelp Undaria pinnatifida

Eloise Dries, Yannick Meyers, Daniel Liesner, Floriele M. Gonzaga, Jakob F. M. Becker, Eliane E. Zakka, Tom Beeckman, Susana M. Coelho, Olivier De Clerck, Kenny A. Bogaert

(2024/09) - New Phytologist

DOI
2272. The immediate metabolomic effects of whole‐genome duplication in the greater duckweed, Spirodela polyrhiza

Tian Wu, Quinten Bafort, Frederik Mortier, Fabricio Almeida‐Silva, Annelore Natran, Yves Van de Peer

(2024/08) - American Journal of Botany

DOI
2271. A metabolic perspective on polyploid invasion and the emergence of life histories: Insights from a mechanistic model

Silvija Milosavljevic, Felipe Kauai, Frederik Mortier, Yves Van de Peer, Dries Bonte

(2024/08) - American Journal of Botany

DOI
2270. The Plant PTM Viewer 2.0: in-depth exploration of plant protein modification landscapes

Patrick Willems, Lieven Sterck, Avilien Dard, Jingjing Huang, Ive De Smet, Kris Gevaert, Frank Van Breusegem, Christine Foyer

(2024/08) - Journal of Experimental Botany

DOI
2269. Cysteine thiol sulfinic acid in plant stress signaling

Jingjing Huang, Lindsy De Veirman, Frank Van Breusegem

(2024/08) - Plant, Cell & Environment

DOI
2268. Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses

Xiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, Shubhada R Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem, Olivier Van Aken, Klaas Vandepoele, Inge De Clercq, Saijaliisa Kangasjärvi

(2024/08) - Journal of Experimental Botany

DOI
2267. Redox regulation of gene expression: proteomics reveals multiple previously undescribed redox-sensitive cysteines in transcription complexes and chromatin modifiers

Avilien Dard, Frank Van Breusegem, Amna Mhamdi, Graham Noctor

(2024/08) - Journal of Experimental Botany

DOI
2266. Glutathione: a key modulator of plant defence and metabolism through multiple mechanisms

Graham Noctor, Mathias Cohen, Lug Trémulot, Gilles Châtel-Innocenti, Frank Van Breusegem, Amna Mhamdi, Karl-Josef Dietz

(2024/08) - Journal of Experimental Botany

DOI
2265. Seed longevity is controlled by metacaspases

Chen Liu, Ioannis H. Hatzianestis, Thorsten Pfirrmann, Salim H. Reza, Elena A. Minina, Ali Moazzami, Simon Stael, Emilio Gutierrez–Beltran, Eugenia Pitsili, Peter Dörmann, Sabine D’Andrea, Kris Gevaert, Francisco Romero–Campero, Pingtao Ding, Moritz K. Nowack, Frank Van Breusegem, Jonathan D. G. Jones, Peter V. Bozhkov, Panagiotis N. Moschou

(2024/08) - Nature Communications

DOI
2264. Seed longevity is controlled by metacaspases

Chen Liu, Ioannis H. Hatzianestis, Thorsten Pfirrmann, Salim H. Reza, Elena A. Minina, Ali Moazzami, Simon Stael, Emilio Gutierrez–Beltran, Eugenia Pitsili, Peter Dörmann, Sabine D’Andrea, Kris Gevaert, Francisco Romero–Campero, Pingtao Ding, Moritz K. Nowack, Frank Van Breusegem, Jonathan D. G. Jones, Peter V. Bozhkov, Panagiotis N. Moschou

(2024/08) - Nature Communications

DOI
2263. Arabidopsis transcription factor ANAC102 predominantly expresses a nuclear protein and acts as a negative regulator of methyl viologen-induced oxidative stress responses

Xiaopeng Luo, Xinqiang Jiang, Vivian Schmitt, Shubhada R Kulkarni, Huy Cuong Tran, Sylwia M Kacprzak, Frank Van Breusegem, Olivier Van Aken, Klaas Vandepoele, Inge De Clercq, Saijaliisa Kangasjärvi

(2024/08) - Journal of Experimental Botany

DOI
2262. Guidelines for naming and studying plasma membrane domains in plants

Yvon Jaillais, Emmanuelle Bayer, Dominique C. Bergmann, Miguel A. Botella, Yohann Boutté, Tolga O. Bozkurt, Marie-Cecile Caillaud, Véronique Germain, Guido Grossmann, Ingo Heilmann, Piers A. Hemsley, Charlotte Kirchhelle, Alexandre Martinière, Yansong Miao, Sebastien Mongrand, Sabine Müller, Lise C. Noack, Yoshihisa Oda, Thomas Ott, Xue Pan, Roman Pleskot, Martin Potocky, Stéphanie Robert, Clara Sanchez Rodriguez, Françoise Simon-Plas, Eugenia Russinova, Daniel Van Damme, Jaimie M. Van Norman, Dolf Weijers, Shaul Yalovsky, Zhenbiao Yang, Enric Zelazny, Julien Gronnier

(2024/08) - Nature Plants

DOI
2261. The Plant PTM Viewer 2.0: in-depth exploration of plant protein modification landscapes

Patrick Willems, Lieven Sterck, Avilien Dard, Jingjing Huang, Ive De Smet, Kris Gevaert, Frank Van Breusegem, Christine Foyer

(2024/08) - Journal of Experimental Botany

DOI
2260. Nitrate and ammonium, the yin and yang of nitrogen uptake: a time-course transcriptomic study in rice

Pierre-Mathieu Pélissier, Boris Parizot, Letian Jia, Alexa De Knijf, Vera Goossens, Pascal Gantet, Antony Champion, Dominique Audenaert, Wei Xuan, Tom Beeckman, Hans Motte

(2024/08) - Frontiers in Plant Science

DOI
2259. Continual improvement of CRISPR‐induced multiplex mutagenesis in Arabidopsis

Ward Develtere, Ward Decaestecker, Debbie Rombaut, Chantal Anders, Elke Clicque, Marnik Vuylsteke, Thomas B. Jacobs

(2024/07) - The Plant Journal

DOI
2258. hybridexpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors

Fabricio Almeida‐Silva, Lucas Prost‐Boxoen, Yves Van de Peer

(2024/07) - New Phytologist

DOI
2257. Social and biological innovations are essential to deliver transformative forest biotechnologies

Wout Boerjan, Steven H. Strauss

(2024/07) - New Phytologist

DOI
2256. Breeding for improved digestibility and processing of lignocellulosic biomass in Zea mays

Yasmine Vanhevel, Astrid De Moor, Hilde Muylle, Ruben Vanholme, Wout Boerjan

(2024/07) - Frontiers in Plant Science

DOI
2255. Endosperm cell death: roles and regulation in angiosperms

Nicolas M Doll, Moritz K Nowack, Gabriela Pagnussat

(2024/07) - Journal of Experimental Botany

DOI
2254. Vascular Development in Arabidopsis thaliana Roots

Claudia von der Mark, Akshay Gokulendran Nair, Bert De Rybel

(2024/06) - Plant Roots

DOI
2253. How temperature modulates the expression of pathogenesis-related molecules of the cross-kingdom pathogen Lasiodiplodia hormozganensis

Carina Félix, Rodrigo Meneses, Micael F.M. Gonçalves, Ana S. Duarte, Jesus V. Jorrín-Novo, Yves van de Peer, Dieter Deforce, Filip Van Nieuwerburgh, Artur Alves, Ana C. Esteves

(2024/06) - Science of The Total Environment

DOI
2252. Optimized tetraploidization strategies in tissue culture for Lolium, Festuca, and Festulolium

Marlies K.R. PEETERS, Isabelle MARYNS, An GHESQUIERE, Katrijn VAN LAERE, Yves VAN DE PEER, Tom RUTTINK, Leen LEUS

(2024/06) - Biologia plantarum

DOI
2251. A tomato B-box protein regulates plant development and fruit quality through the interaction with PIF4, HY5, and RIN transcription factors

Lumi Shiose, Juliene dos Reis Moreira, Bruno Silvestre Lira, Gabriel Ponciano, Gabriel Gómez-Ocampo, Raquel Tsu Ay Wu, José Laurindo dos Santos Júnior, Nikolaos Ntelkis, Elke Clicque, Maria José Oliveira, Greice Lubini, Eny Iochevet Segal Floh, Javier Francisco Botto, Marcelo José Pena Ferreira, Alain Goossens, Luciano Freschi, Magdalena Rossi

(2024/06) - Journal of Experimental Botany

DOI
2250. Structural and biochemical characterization of SmoPG1, an exo-polygalacturonase from Selaginella moellendorffii

Camille Carton, Josip Safran, Adrien Lemaire, Jean-Marc Domon, Ward Poelmans, Tom Beeckman, Francisco Ramos-Martín, Viviane Antonietti, Pascal Sonnet, Anissa Lounès-Hadj Sahraoui, Valérie Lefebvre, Jérôme Pelloux, Corinne Pau-Roblot

(2024/06) - International Journal of Biological Macromolecules

DOI
2249. wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Hengchi Chen, Arthur Zwaenepoel, Yves Van de Peer

(2024/05) - Bioinformatics

DOI
2248. Interspecific transfer of genetic information through polyploid bridges

Felipe Kauai, Quinten Bafort, Frederik Mortier, Marc Van Montagu, Dries Bonte, Yves Van de Peer

(2024/05) - Proceedings of the National Academy of Sciences

DOI
2247. Convergent and/or parallel evolution of RNA‐binding proteins in angiosperms after polyploidization

Liangyu Guo, Shuo Wang, Xi Jiao, Xiaoxue Ye, Deyin Deng, Hua Liu, Yan Li, Yves Van de Peer, Wenwu Wu

(2024/05) - New Phytologist

DOI
2246. Understanding polyploid establishment: temporary persistence or stable coexistence?

Frederik Mortier, Quinten Bafort, Silvija Milosavljevic, Felipe Kauai, Lucas Prost Boxoen, Yves Van de Peer, Dries Bonte

(2024/05) - Oikos

DOI
2245. Reversible S-nitrosylation of bZIP67 by peroxiredoxin IIE activity and nitro-fatty acids regulates the plant lipid profile

Inmaculada Sánchez-Vicente, Pablo Albertos, Carlos Sanz, Brecht Wybouw, Bert De Rybel, Juan C. Begara-Morales, Mounira Chaki, Capilla Mata-Pérez, Juan B. Barroso, Oscar Lorenzo

(2024/04) - Cell Reports

DOI
2244. The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi Rastas, Chunfang Zheng, Daniella Santos Muñoz, João Meidanis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J. Krabbenhoft, Zhen Qin Wang, Steven J. Fleck, Rudy Aussel, Laurence Bellanger, Aline Charpagne, Coralie Fournier, Mohamed Kassam, Gregory Lefebvre, Sylviane Métairon, Déborah Moine, Michel Rigoreau, Jens Stolte, Perla Hamon, Emmanuel Couturon, Christine Tranchant-Dubreuil, Minakshi Mukherjee, Tianying Lan, Jan Engelhardt, Peter Stadler, Samara Mireza Correia De Lemos, Suzana Ivamoto Suzuki, Ucu Sumirat, Ching Man Wai, Nicolas Dauchot, Simon Orozco-Arias, Andrea Garavito, Catherine Kiwuka, Pascal Musoli, Anne Nalukenge, Erwan Guichoux, Havinga Reinout, Martin Smit, Lorenzo Carretero-Paulet, Oliveiro Guerreiro Filho, Masako Toma Braghini, Lilian Padilha, Yves Van de Peer

(2024/04) - Nature Genetics

DOI
2243. Exploring the potential role of four Rhizophagus irregularis nuclear effectors: opportunities and technical limitations

María Victoria Aparicio Chacón, Sofía Hernández Luelmo, Viktor Devlieghere, Louis Robichez, Toon Leroy, Naomi Stuer, Annick De Keyser, Evi Ceulemans, Alain Goossens, Sofie Goormachtig, Judith Van Dingenen

(2024/04) - Frontiers in Plant Science

DOI
2242. Exploring the potential role of four Rhizophagus irregularis nuclear effectors: opportunities and technical limitations

María Victoria Aparicio Chacón, Sofía Hernández Luelmo, Viktor Devlieghere, Louis Robichez, Toon Leroy, Naomi Stuer, Annick De Keyser, Evi Ceulemans, Alain Goossens, Sofie Goormachtig, Judith Van Dingenen

(2024/04) - Frontiers in Plant Science

DOI
2241. Enhancing agroecosystem nitrogen management: microbial insights for improved nitrification inhibition

Fabian Beeckman, Laure Annetta, Mario Corrochano-Monsalve, Tom Beeckman, Hans Motte

(2024/04) - Trends in Microbiology

DOI
2240. Studying plant vascular development using single-cell approaches

Claudia von der Mark, Max Minne, Bert De Rybel

(2024/03) - Current Opinion in Plant Biology

DOI
2239. Mechanistic insights into DNA damage recognition and checkpoint control in plants

Josephine Herbst, Qian-Qian Li, Lieven De Veylder

(2024/03) - Nature Plants

DOI
2238. Roadmap for the next decade of plant programmed cell death research

Joanna Kacprzyk, Rory Burke, Laia Armengot, Marianna Coppola, Sophie B. Tattrie, Hannah Vahldick, Diane C. Bassham, Maurice Bosch, Nicholas J. B. Brereton, Jean‐Luc Cacas, Núria S. Coll, Patrick Gallois, Kazuyuki Kuchitsu, Moritz K. Nowack, Hilary J. Rogers, Frank Van Breusegem, Arunika H. L. A. N. Gunawardena, Paul F. McCabe

(2024/03) - New Phytologist

DOI
2237. Grass pea (Lathyrus sativus) interesting panoply of mechanisms to cope with contrasting water stress conditions – a controlled study of sub populational differences in a worldwide collection of accessions

Matilde Sanches, Ana Margarida Sampaio, Susana Araújo, Fred van Eeuwijk, Frank Van Breusegem, M. Carlota Vaz Patto

(2024/03) - Agricultural Water Management

DOI
2236. Citizen science boosts fundamental and applied research for sustainable soybean cultivation in North‐Western Europe

Lena Vlaminck, Birgit Vanden Berghen, Stien Mertens, Jurgen Wuyts, Liesbeth Aerts, Judith Van Dingenen, Sofie Bekaert, Steven Maere, Liesbet Vranken, Sofie Goormachtig

(2024/03) - PLANTS, PEOPLE, PLANET

DOI
2235. Heritable microbiome variation is correlated with source environment in locally adapted maize varieties

Xiaoming He, Danning Wang, Yong Jiang, Meng Li, Manuel Delgado-Baquerizo, Chloee McLaughlin, Caroline Marcon, Li Guo, Marcel Baer, Yudelsy A. T. Moya, Nicolaus von Wirén, Marion Deichmann, Gabriel Schaaf, Hans-Peter Piepho, Zhikai Yang, Jinliang Yang, Bunlong Yim, Kornelia Smalla, Sofie Goormachtig, Franciska T. de Vries, Hubert Hüging, Mareike Baer, Ruairidh J. H. Sawers, Jochen C. Reif, Frank Hochholdinger, Xinping Chen, Peng Yu

(2024/03) - Nature Plants

DOI
2234. Citizen science boosts fundamental and applied research for sustainable soybean cultivation in North‐Western Europe

Lena Vlaminck, Birgit Vanden Berghen, Stien Mertens, Jurgen Wuyts, Liesbeth Aerts, Judith Van Dingenen, Sofie Bekaert, Steven Maere, Liesbet Vranken, Sofie Goormachtig

(2024/03) - PLANTS, PEOPLE, PLANET

DOI
2233. A developmentally controlled cellular decompartmentalization process executes programmed cell death in the Arabidopsis root cap.

Jie Wang, Norbert BOLLIER, Rafael Andrade Buono, Hannah Vahldick, Zongcheng Lin, Qiangnan Feng, Roman Hudeček, qihang jiang, evelien mylle, daniel van damme, Moritz Nowack

(2024/03) - The Plant Cell

DOI
2232. Roadmap for the next decade of plant programmed cell death research

Joanna Kacprzyk, Rory Burke, Laia Armengot, Marianna Coppola, Sophie B. Tattrie, Hannah Vahldick, Diane C. Bassham, Maurice Bosch, Nicholas J. B. Brereton, Jean‐Luc Cacas, Núria S. Coll, Patrick Gallois, Kazuyuki Kuchitsu, Moritz K. Nowack, Hilary J. Rogers, Frank Van Breusegem, Arunika H. L. A. N. Gunawardena, Paul F. McCabe

(2024/03) - New Phytologist

DOI
2231. A developmentally controlled cellular decompartmentalization process executes programmed cell death in the Arabidopsis root cap

Jie Wang, Norbert Bollier, Rafael Andrade Buono, Hannah Vahldick, Zongcheng Lin, Qiangnan Feng, Roman Hudecek, Qihang Jiang, Evelien Mylle, Daniel Van Damme, Moritz K Nowack

(2024/03) - The Plant Cell

DOI
2230. Heterodimerization domains in MAP4 KINASEs determine subcellular localization and activity in Arabidopsis

Lixia Pan, Cassio Flavio Fonseca de Lima, Lam Dai Vu, Brigitte van de Cotte, Nancy De Winne, Kris Gevaert, Geert De Jaeger, Ive De Smet

(2024/03) - Plant Physiology

DOI
2229. Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

Carolin Grones, Thomas Eekhout, Dongbo Shi, Manuel Neumann, Lea S Berg, Yuji Ke, Rachel Shahan, Kevin L Cox, Jr, Fabio Gomez-Cano, Hilde Nelissen, Jan U Lohmann, Stefania Giacomello, Olivier C Martin, Benjamin Cole, Jia-Wei Wang, Kerstin Kaufmann, Michael T Raissig, Gergo Palfalvi, Thomas Greb, Marc Libault, Bert De Rybel

(2024/03) - The Plant Cell

DOI
2228. A root cap-localized NAC transcription factor controls root halotropic response to salt stress in Arabidopsis

Lulu Zheng, Yongfeng Hu, Tianzhao Yang, Zhen Wang, Daoyuan Wang, Letian Jia, Yuanming Xie, Long Luo, Weicong Qi, Yuanda Lv, Tom Beeckman, Wei Xuan, Yi Han

(2024/03) - Nature Communications

DOI
2227. Orthogonal LoxPsym sites allow multiplexed site-specific recombination in prokaryotic and eukaryotic hosts

Charlotte Cautereels, Jolien Smets, Jonas De Saeger, Lloyd Cool, Yanmei Zhu, Anna Zimmermann, Jan Steensels, Anton Gorkovskiy, Thomas B. Jacobs, Kevin J. Verstrepen

(2024/02) - Nature Communications

DOI
2226. High-quality genome assembly enables prediction of allele-specific gene expression in hybrid poplar

Tian-Le Shi, Kai-Hua Jia, Yu-Tao Bao, Shuai Nie, Xue-Chan Tian, Xue-Mei Yan, Zhao-Yang Chen, Zhi-Chao Li, Shi-Wei Zhao, Hai-Yao Ma, Ye Zhao, Xiang Li, Ren-Gang Zhang, Jing Guo, Wei Zhao, Yousry Aly El-Kassaby, Niels Müller, Yves Van de Peer, Xiao-Ru Wang, Nathaniel Robert Street, Ilga Porth, Xinmin An, Jian-Feng Mao

(2024/02) - Plant Physiology

DOI
2225. Untangling the gordian knot: The intertwining interactions between developmental hormone signaling and epigenetic mechanisms in insects.

Geens B, Goossens S, Li J, Van de Peer Y, Vanden Broeck J

(2024/02) - Molecular and cellular endocrinology

DOI
2224. Waking up Sleeping Beauty: DNA damage activates dormant stem cell division by enhancing brassinosteroid signaling.

Heyman J, De Veylder L

(2024/02) - Journal of experimental botany

DOI
2223. Redox regulation of chromatin remodelling in plants.

Plskova Z, Van Breusegem F, Kerchev P

(2024/02) - Plant, cell & environment

DOI
2222. Hydroxycinnamaldehyde-derived benzofuran components in lignins.

Yoshioka K, Kim H, Lu F, De Ridder N, Vanholme R, Kajita S, Boerjan W, Ralph J

(2024/02) - Plant physiology

DOI
2221. Top five unanswered questions in plant cell surface research.

Boerjan W, Burlat V, Cosgrove DJ, Dunand C, Dupree P, Haas KT, Ingram G, Jamet E, Mohnen D, Moussu S, Peaucelle A, Persson S, Voiniciuc C, Höfte H

(2024/02) - Cell surface (Amsterdam, Netherlands)

DOI
2220. Biomolecular condensation orchestrates clathrin-mediated endocytosis in plants.

Dragwidge JM, Wang Y, Brocard L, De Meyer A, Hudeček R, Eeckhout D, Grones P, Buridan M, Chambaud C, Pejchar P, Potocký M, Winkler J, Vandorpe M, Van Damme D

(2024/02) - Nature cell biology

DOI
2219. Chromatin attachment to the nuclear matrix represses hypocotyl elongation in Arabidopsis thaliana

Linhao Xu, Shiwei Zheng, Katja Witzel, Eveline Van De Slijke, Alexandra Baekelandt, Evelien Mylle, Daniel Van Damme, Jinping Cheng, Geert De Jaeger, Dirk Inzé, Hua Jiang

(2024/02) - Nature Communications

DOI
2218. Mutation of AtPME2, a pH-Dependent Pectin Methylesterase, Affects Cell Wall Structure and Hypocotyl Elongation

Ludivine Hocq, Olivier Habrylo, Fabien Sénéchal, Aline Voxeur, Corinne Pau-Roblot, Josip Safran, Françoise Fournet, Solène Bassard, Virginie Battu, Hervé Demailly, José C Tovar, Serge Pilard, Paulo Marcelo, Brett J Savary, Davide Mercadante, Maria Fransiska Njo, Tom Beeckman, Arezki Boudaoud, Laurent Gutierrez, Jérôme Pelloux, Valérie Lefebvre

(2024/02) - Plant And Cell Physiology

DOI
2217. Phosphoproteome analyses pinpoint the F‐box protein SLOW MOTION as a regulator of warm temperature‐mediated hypocotyl growth in Arabidopsis

Shanshuo Zhu, Lixia Pan, Lam Dai Vu, Xiangyu Xu, Beatriz Orosa‐Puente, Tingting Zhu, Pia Neyt, Brigitte van de Cotte, Thomas B. Jacobs, Joshua M. Gendron, Steven H. Spoel, Kris Gevaert, Ive De Smet

(2024/01) - New Phytologist

DOI
2216. A precise balance of TETRASPANIN1/TORNADO2 activity is required for vascular proliferation and ground tissue patterning in Arabidopsis

Nataliia Konstantinova, Eliana Mor, Eline Verhelst, Jonah Nolf, Kenzo Vereecken, Feng Wang, Daniel Van Damme, Bert De Rybel, Matouš Glanc

(2024/01) - Physiologia Plantarum

DOI
2215. Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics.

Grones C, Eekhout T, Shi D, Neumann M, Berg LS, Ke Y, Shahan R, Cox KL, Gomez-Cano F, Nelissen H, Lohmann JU, Giacomello S, Martin OC, Cole B, De Rybel B

(2024/01) - The Plant cell

DOI
2214. Origin and evolution of the triploid cultivated banana genome.

Li X, Yu S, Cheng Z, Chang X, Yun Y, Jiang M, Chen X, Wen X, Li H, Zhu W, Xu S, Xu Y, Wang X, Zhang C, Wu Q, Hu J, Lin Z, Aury JM, Van de Peer Y, Wang Z, Zhou X, Wang J, Lü P, Zhang L

(2024/01) - Nature genetics

DOI
2213. Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment.

Ma X, Vanneste S, Chang J, Ambrosino L, Barry K, Bayer T, Bobrov AA, Boston L, Campbell JE, Chen H, Chiusano ML, Dattolo E, Grimwood J, He G, Van de Peer Y

(2024/01) - Nature plants

DOI
2212. A conserved graft formation process in Norway spruce and Arabidopsis identifies the PAT gene family as central regulators of wound healing

Ming Feng, Ai Zhang, Van Nguyen, Anchal Bisht, Curt Almqvist, Lieven De Veylder, Annelie Carlsbecker, Charles W. Melnyk

(2024/01) - Nature Plants

DOI
2211. The regeneration conferring transcription factor complex ERF115‐PAT1 coordinates a wound‐induced response in root‐knot nematode induced galls

Cleberson Ribeiro, Bruno Paes de Melo, Isabela Tristan Lourenço‐Tessutti, Helkin Forero Ballesteros, Karla Veloso Gonçalves Ribeiro, Killian Menuet, Jefri Heyman, Adriana Hemerly, Maria Fatima Grossi de Sá, Lieven De Veylder, Janice de Almeida Engler

(2024/01) - New Phytologist

DOI
2210. H2O2-dependent oxidation of the transcription factor GmNTL1 promotes salt tolerance in soybean

Wenxiao Zhang, Wenjiao Zhi, Hong Qiao, Jingjing Huang, Shuo Li, Qing Lu, Nan Wang, Qiang Li, Qian Zhou, Jiaqi Sun, Yuting Bai, Xiaojian Zheng, Mingyi Bai, Frank Van Breusegem, Fengning Xiang

(2024/01) - The Plant Cell

DOI
2209. Woody plant cell walls: Fundamentals and utilization

Wei Li, Ying-Chung Jimmy Lin, Ying-Lan Chen, Chenguang Zhou, Shuang Li, Nette De Ridder, Dyoni M. Oliveira, Lanjun Zhang, Baocai Zhang, Jack P. Wang, Changzheng Xu, Xiaokang Fu, Keming Luo, Ai-Min Wu, Taku Demura, Meng-Zhu Lu, Yihua Zhou, Laigeng Li, Toshiaki Umezawa, Wout Boerjan, Vincent L. Chiang

(2024/01) - Molecular Plant

DOI
2208. Non-targeted discovery of high-value bio-products in Nicotiana glauca L: a potential renewable plant feedstock

Natalia Carreno-Quintero, Takayuki Tohge, Rebecca Van Acker, Lauren S. McKee, Qi Zhou, Antje Bolze, Xiaohui Xing, Merve Özparpucu, Markus Rüggeberg, Thomas Piofczyk, Yaw Koram, Vincent Bulone, Wout Boerjan, Alisdair R. Fernie, Paul D. Fraser

(2024/01) - Bioresources and Bioprocessing

DOI
2207. Out-of-Sample R 2 : Estimation and Inference

Stijn Hawinkel, Willem Waegeman, Steven Maere

(2024/01) - The American Statistician

DOI
2206. Seasonal Metabolic Dynamics of Microeukaryotic Plankton: A Year-long Metatranscriptomic Study in a Temperate Sea

Michiel Perneel, Rune Lagaisse, Jonas Mortelmans, Steven Maere, Pascal I. Hablützel

(2024/01) -

DOI
2205. Arbuscular mycorrhizal hyphae facilitate rhizobia dispersal and nodulation in legumes

Jiadong He, Lin Zhang, Judith Van Dingenen, Sandrien Desmet, Sofie Goormachtig, Maryline Calonne-Salmon, Stéphane Declerck

(2024/01) - The ISME Journal

DOI
2204. Digging into the lettuce cold-specific root microbiome in search of chilling stress tolerance-conferring plant growth-promoting bacteria

Antoine Persyn, Sonia Garcia Mendez, Stien Beirinckx, Sam De Meyer, Anne Willems, Caroline De Tender, Sofie Goormachtig

(2024/01) - Phytobiomes Journal

DOI
2203. Linnemannia elongata: a key species in chitin-based plant growth promotion

Caroline De Tender, Michiel Vandecasteele, Sarah Ommeslag, Noémie De Zutter, Ellen Vandenbussche, Annelies Haegeman, Kris Audenaert, Leilei Li, Bart Vandecasteele, Floris Voorthuijzen, Kristof Maenhout, Stien Beirinckx, Rosita Barneveldt, Sofie Goormachtig, Jane Debode

(2024/01) - Phytobiomes Journal

DOI
2202. Convergent evolution of water-conducting cells in Marchantia recruited the ZHOUPI gene promoting cell wall reinforcement and programmed cell death.

Lu YT, Loue-Manifel J, Bollier N, Gadient P, De Winter F, Carella P, Hoguin A, Grey-Switzman S, Marnas H, Simon F, Copin A, Fischer S, de Leau E, Schornack S, Nishihama R, Kohchi T, Depège Fargeix N, Ingram G, Nowack MK, Goodrich J

(2024/01) - Current Biology

DOI
2201. A precise balance of TETRASPANIN1/TORNADO2 activity is required for vascular proliferation and ground tissue patterning in Arabidopsis

Nataliia Konstantinova, Eliana Mor, Eline Verhelst, Jonah Nolf, Kenzo Vereecken, Feng Wang, Daniel Van Damme, Bert De Rybel, Matouš Glanc

(2024/01) - Physiologia Plantarum

DOI
2200. Structural and Evolutionary Aspects of Plant Endocytosis.

Kraus M, Pleskot R, Van Damme D

(2024/01) - Annual review of plant biology

DOI
2199. Phosphoproteome analyses pinpoint the F‐box protein SLOW MOTION as a regulator of warm temperature‐mediated hypocotyl growth in Arabidopsis

Shanshuo Zhu, Lixia Pan, Lam Dai Vu, Xiangyu Xu, Beatriz Orosa‐Puente, Tingting Zhu, Pia Neyt, Brigitte van de Cotte, Thomas B. Jacobs, Joshua M. Gendron, Steven H. Spoel, Kris Gevaert, Ive De Smet

(2024/01) - New Phytologist

DOI
2198. MINI‐AC: inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva Pérez, Camilla Ferrari, Julia Engelhorn, Thomas Depuydt, Hilde Nelissen, Thomas Hartwig, Klaas Vandepoele

(2024/01) - The Plant Journal

DOI
2197. High-throughput assays to identify archaea-targeting nitrification inhibitors

Fabian Beeckman, Andrzej Drozdzecki, Alexa De Knijf, Dominique Audenaert, Tom Beeckman, Hans Motte

(2024/01) - Frontiers in Plant Science

DOI
2196. Continual improvement of multiplex mutagenesis in Arabidopsis

Ward Develtere, Ward Decaestecker, Debbie Rombaut, Chantal Anders, Elke Clicque, Marnik Vuylsteke, Thomas B. Jacobs

(2023/12) -

DOI
2195. Hormonal control of the molecular networks guiding vascular tissue development in the primary root meristem of Arabidopsis

Yanbiao Sun, Baojun Yang, Bert De Rybel

(2023/12) - Journal of Experimental Botany

DOI
2194. Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package

Fabricio Almeida‐Silva, Yves Van de Peer

(2023/12) - Methods in Ecology and Evolution

DOI
2193. Pigmentation enhancement techniques during ornamental fish production

Cher Chien Lau, Siti Azizah Mohd Nor, Min Pau Tan, Yik Sung Yeong, Li Lian Wong, Yves Van de Peer, Patrick Sorgeloos, Muhd Danish-Daniel

(2023/12) - Reviews in Fish Biology and Fisheries

DOI
2192. The long non‐coding RNALINDA restrains cellular collapse following DNA damage in Arabidopsis thaliana

Josephine Herbst, Solveig Henriette Nagy, Ilse Vercauteren, Lieven De Veylder, Reinhard Kunze

(2023/12) - The Plant Journal

DOI
2191. Chemical induction of hypocotyl rooting reveals extensive conservation of auxin signalling controlling lateral and adventitious root formation

Yinwei Zeng, Inge Verstraeten, Hoang Khai Trinh, Robin Lardon, Sebastien Schotte, Damilola Olatunji, Thomas Heugebaert, Christian Stevens, Mussa Quareshy, Richard Napier, Sara Paola Nastasi, Alex Costa, Bert De Rybel, Catherine Bellini, Tom Beeckman, Steffen Vanneste, Danny Geelen

(2023/12) - New Phytologist

DOI
2190. GH3‐mediated auxin inactivation attenuates multiple stages of lateral root development

Qing Wang, Hugues De Gernier, Xingliang Duan, Yuanming Xie, Danny Geelen, Ken‐ishiro Hayashi, Wei Xuan, Markus Geisler, Kirsten ten Tusscher, Tom Beeckman, Steffen Vanneste

(2023/12) - New Phytologist

DOI
2189. Microparticle-mediated CRISPR DNA delivery for genome editing in poplar

Lennart Hoengenaert, Jan Van Doorsselaere, Ruben Vanholme, Wout Boerjan

(2023/11) - Frontiers in Plant Science

DOI
2188. Cella: 3D data visualization for plant single-cell transcriptomics in Blender.

Su C, Lyu M, Mähönen AP, Helariutta Y, De Rybel B, Muranen S

(2023/11) - Physiologia plantarum

DOI
2187. Expression divergence of expansin genes drive the heteroblasty in Ceratopteris chingii.

Zhang Y, Van de Peer Y, Lu B, Zhang S, Che J, Chen J, Marchal K, Yang X

(2023/11) - BMC biology

DOI
2186. Microparticle-mediated CRISPR DNA delivery for genome editing in poplar.

Hoengenaert L, Van Doorsselaere J, Vanholme R, Boerjan W

(2023/11) - Frontiers in plant science

DOI
2185. Interspecies co‐expression analysis of lateral root development using inducible systems in rice, Medicago, and Arabidopsis

Hans Motte, Boris Parizot, Wei Xuan, Qian Chen, Steven Maere, Sandra Bensmihen, Tom Beeckman

(2023/11) - The Plant Journal

DOI
2184. Monitoring of drought stress and transpiration rate using proximal thermal and hyperspectral imaging in an indoor automated plant phenotyping platform

Stien Mertens, Lennart Verbraeken, Heike Sprenger, Sam De Meyer, Kirin Demuynck, Bernard Cannoot, Julie Merchie, Jolien De Block, Jonathan T. Vogel, Wesley Bruce, Hilde Nelissen, Steven Maere, Dirk Inzé, Nathalie Wuyts

(2023/11) - Plant Methods

DOI
2183. Paternally imprinted LATE-FLOWERING2 transcription factor contributes to paternal-excess interploidy hybridization barriers in wheat.

Yang G, Feng M, Yu K, Cui G, Zhou Y, Sun L, Gao L, Zhang Y, Peng H, Yao Y, Hu Z, Rossi V, De Smet I, Ni Z, Sun Q, Xin M

(2023/11) - Journal of integrative plant biology

DOI
2182. Editorial: Proteomics of plant development and hormonal responses, volume II.

Jones AME, De Smet I

(2023/11) - Frontiers in plant science

DOI
2181. Let's go bananas with paintings

Norbert G.J. Peeters, David Vergauwen, Ive De Smet

(2023/11) - Trends in Plant Science

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2180. Monitoring of drought stress and transpiration rate using proximal thermal and hyperspectral imaging in an indoor automated plant phenotyping platform.

Mertens S, Verbraeken L, Sprenger H, De Meyer S, Demuynck K, Cannoot B, Merchie J, De Block J, Vogel JT, Bruce W, Nelissen H, Maere S, Inzé D, Wuyts N

(2023/11) - Plant methods

DOI
2179. Drug discovery-based approach identifies new nitrification inhibitors

Fabian Beeckman, Andrzej Drozdzecki, Alexa De Knijf, Mario Corrochano-Monsalve, Samuel Bodé, Pieter Blom, Geert Goeminne, Carmen González-Murua, Sebastian Lücker, Pascal Boeckx, Christian V. Stevens, Dominique Audenaert, Tom Beeckman, Hans Motte

(2023/11) - Journal of Environmental Management

DOI
2178. Interspecies co‐expression analysis of lateral root development using inducible systems in rice, Medicago, and Arabidopsis

Hans Motte, Boris Parizot, Wei Xuan, Qian Chen, Steven Maere, Sandra Bensmihen, Tom Beeckman

(2023/11) - The Plant Journal

DOI
2177. The duplication of genomes and genetic networks and its potential for evolutionary adaptation and survival during environmental turmoil

Mehrshad Ebadi, Quinten Bafort, Eshchar Mizrachi, Pieter Audenaert, Pieter Simoens, Marc Van Montagu, Dries Bonte, Yves Van de Peer

(2023/10) - Proceedings of the National Academy of Sciences

DOI
2176. Cutaneous transcriptomic profiling and candidate pigment genes in the wild discus ( Symphysodon spp.)

Tian Tsyh Ng, Cher Chien Lau, Min Pau Tan, Li Lian Wong, Yeong Yik Sung, Tengku Sifzizul Tengku Muhammad, Yves Van de Peer, Sui LiYing, Muhd Danish-Daniel

(2023/10) - New Zealand Journal of Zoology

DOI
2175. Strigolactones repress nodule development and senescence in pea

Judith Van Dingenen, Annick De Keyser, Sandrien Desmet, Alexander Clarysse, Serge Beullens, Jan Michiels, Mélanie Planque, Sofie Goormachtig

(2023/10) - The Plant Journal

DOI
2174. 25 Years of thermomorphogenesis research: milestones and perspectives

Marcel Quint, Carolin Delker, Sureshkumar Balasubramanian, Martin Balcerowicz, Jorge J. Casal, Christian Danve M. Castroverde, Meng Chen, Xuemei Chen, Ive De Smet, Christian Fankhauser, Keara A. Franklin, Karen J. Halliday, Scott Hayes, Danhua Jiang, Jae-Hoon Jung, Eirini Kaiserli, S. Vinod Kumar, Daniel Maag, Eunkyoo Oh, Chung-Mo Park, Steven Penfield, Giorgio Perrella, Salomé Prat, Rodrigo S. Reis, Philip A. Wigge, Björn C. Willige, Martijn van Zanten

(2023/10) - Trends in Plant Science

DOI
2173. It is time to move: Heat-induced translocation events

Tingting Zhu, Shao-Li Yang, Ive De Smet

(2023/10) - Current Opinion in Plant Biology

DOI
2172. Spatial transcriptomics of a lycophyte root sheds light on root evolution.

Yang X, Poelmans W, Grones C, Lakehal A, Pevernagie J, Van Bel M, Njo M, Xu L, Nelissen H, De Rybel B, Motte H, Beeckman T

(2023/09) - Current biology : CB

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2171. Editorial overview: Dynamics underlying plasticity and robustness.

De Rybel B, Dong J

(2023/09) - Current opinion in plant biology

DOI
2170. CysQuant: Simultaneous quantification of cysteine oxidation and protein abundance using data dependent or independent acquisition mass spectrometry.

Huang J, Staes A, Impens F, Demichev V, Van Breusegem F, Gevaert K, Willems P

(2023/09) - Redox biology

DOI
2169. The winner’s curse under dependence: repairing empirical Bayes using convoluted densities

Stijn Hawinkel, Olivier Thas, Steven Maere

(2023/09) -

DOI
2168. Histone Deacetylases Regulate MORE AXILLARY BRANCHED 2-Dependent Germination of Arabidopsis thaliana

Arne Temmerman, Annick De Keyser, François-Didier Boyer, Sylwia Struk, Sofie Goormachtig

(2023/09) - Plant And Cell Physiology

DOI
2167. Seeking the interspecies crosswalk for filamentous microbe effectors

Naomi Stuer, Petra Van Damme, Sofie Goormachtig, Judith Van Dingenen

(2023/09) - Trends in Plant Science

DOI
2166. Endosperm cell death promoted by NAC transcription factors facilitates embryo invasion in Arabidopsis

Nicolas M. Doll, Tom Van Hautegem, Neeltje Schilling, Riet De Rycke, Freya De Winter, Matyáš Fendrych, Moritz K. Nowack

(2023/09) - Current Biology

DOI
2165. Protein phase separation in plant membrane biology: more than just a compartmentalization strategy

Jonathan Michael Dragwidge, Daniël Van Damme

(2023/09) - The Plant Cell

DOI
2164. Phase separation-based visualization of protein–protein interactions and kinase activities in plants

Alaeddine Safi, Wouter Smagghe, Amanda Gonçalves, Qing Wang, Ke Xu, Ana Ibis Fernandez, Benjamin Cappe, Franck B Riquet, Evelien Mylle, Dominique Eeckhout, Nancy De Winne, Eveline Van De Slijke, Freya Persyn, Geert Persiau, Daniël Van Damme, Danny Geelen, Geert De Jaeger, Tom Beeckman, Jelle Van Leene, Steffen Vanneste

(2023/09) - The Plant Cell

DOI
2163. Phosphorylation of ADAPTOR PROTEIN-2 μ-adaptin by ADAPTOR-ASSOCIATED KINASE1 regulates the tropic growth of Arabidopsis roots

Wei Siao, Peng Wang, Xiuyang Zhao, Lam Dai Vu, Ive De Smet, Eugenia Russinova

(2023/09) - The Plant Cell

DOI
2162. Spatial transcriptomics of a lycophyte root sheds light on root evolution.

Yang X, Poelmans W, Grones C, Lakehal A, Pevernagie J, Van Bel M, Njo M, Xu L, Nelissen H, De Rybel B, Motte H, Beeckman T

(2023/09) - Current biology : CB

DOI
2161. Phase separation-based visualization of protein–protein interactions and kinase activities in plants

Alaeddine Safi, Wouter Smagghe, Amanda Gonçalves, Qing Wang, Ke Xu, Ana Ibis Fernandez, Benjamin Cappe, Franck B Riquet, Evelien Mylle, Dominique Eeckhout, Nancy De Winne, Eveline Van De Slijke, Freya Persyn, Geert Persiau, Daniël Van Damme, Danny Geelen, Geert De Jaeger, Tom Beeckman, Jelle Van Leene, Steffen Vanneste

(2023/09) - The Plant Cell

DOI
2160. Genome and transcriptome of Selaginella kraussiana reveal evolution of root apical meristems in vascular plants.

Liu W, Cai G, Zhai N, Wang H, Tang T, Zhang Y, Zhang Z, Sun L, Zhang Y, Beeckman T, Xu L

(2023/09) - Current biology : CB

DOI
2159. Trehalose-6-phosphate signaling regulates lateral root formation in Arabidopsis thaliana.

Morales-Herrera S, Jourquin J, Coppé F, Lopez-Galvis L, De Smet T, Safi A, Njo M, Griffiths CA, Sidda JD, Mccullagh JSO, Xue X, Davis BG, Beeckman T

(2023/09) - Proceedings of the National Academy of Sciences of the United States of America

DOI
2158. Spatial transcriptomics of a lycophyte root sheds light on root evolution.

Yang X, Poelmans W, Grones C, Lakehal A, Pevernagie J, Van Bel M, Njo M, Xu L, Nelissen H, De Rybel B, Motte H, Beeckman T

(2023/09) - Current biology : CB

DOI
2157. Combining multiplex gene editing and doubled haploid technology in maize

Lennert Impens, Christian D. Lorenzo, Wout Vandeputte, Pieter Wytynck, Kevin Debray, Jari Haeghebaert, Denia Herwegh, Thomas B. Jacobs, Tom Ruttink, Hilde Nelissen, Dirk Inzé, Laurens Pauwels

(2023/08) - New Phytologist

DOI
2156. Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division.

Kim EJ, Zhang C, Guo B, Eekhout T, Houbaert A, Wendrich JR, Vandamme N, Tiwari M, Simon-Vezo C, Vanhoutte I, Saeys Y, Wang K, Zhu Y, De Rybel B, Russinova E

(2023/08) - Proceedings of the National Academy of Sciences of the United States of America

DOI
2155. A phloem‐localized Arabidopsis metacaspase (AtMC3) improves drought tolerance

Eugenia Pitsili, Ricardo Rodriguez‐Trevino, Nerea Ruiz‐Solani, Fatih Demir, Elizabeth Kastanaki, Charlene Dambire, Roger de Pedro‐Jové, Dominique Vercammen, Jose Salguero‐Linares, Hardy Hall, Melissa Mantz, Martin Schuler, Hannele Tuominen, Frank Van Breusegem, Marc Valls, Sergi Munné‐Bosch, Michael J. Holdsworth, Pitter F. Huesgen, Antia Rodriguez‐Villalon, Nuria S. Coll

(2023/08) - New Phytologist

DOI
2154. Suppression of the Arabidopsis cinnamoyl-CoA reductase 1-6 intronic T-DNA mutation by epigenetic modification.

Wouters M, Bastiaanse H, Rombauts S, de Vries L, De Pooter T, Strazisar M, Neutelings G, Vanholme R, Boerjan W

(2023/08) - Plant physiology

DOI
2153. Functional annotation of proteins for signaling network inference in non-model species

Lisa Van den Broeck, Dinesh Kiran Bhosale, Kuncheng Song, Cássio Flavio Fonseca de Lima, Michael Ashley, Tingting Zhu, Shanshuo Zhu, Brigitte Van De Cotte, Pia Neyt, Anna C. Ortiz, Tiffany R. Sikes, Jonas Aper, Peter Lootens, Anna M. Locke, Ive De Smet, Rosangela Sozzani

(2023/08) - Nature Communications

DOI
2152. A conserved signaling axis integrates conflicting environmental drought and heat signals to control stomatal aperture in plants

De Smet I, Xu X, Praat M, Pizzio G, Jiang Z, Driever S, Wang R, de Cotte Bv, Villers S, Gevaert K, LEONHARDT N, Nelissen H, Kinoshita T, Vanneste S, Vu L

(2023/08) -

DOI
2151. When drought meets heat - a plant omics perspective.

Xu X, Fonseca de Lima CF, Vu LD, De Smet I

(2023/08) - Frontiers in plant science

DOI
2150. Structural and functional diversity in plant specialized metabolism signals and products: The case of oxylipins and triterpenes

Elia Lacchini, Jhon Venegas-Molina, Alain Goossens

(2023/08) - Current Opinion in Plant Biology

DOI
2149. Monitoring of drought stress and transpiration rate using proximal thermal and hyperspectral imaging in an indoor automated plant phenotyping platform

Mertens S, Verbraeken L, Sprenger H, De Meyer S, Demuynck K, Cannoot B, Merchie J, De Block J, Vogel J, Bruce W, Nelissen H, Maere S, Inzé D, Wuyts N

(2023/08) -

DOI
2148. A conserved signaling axis integrates conflicting environmental drought and heat signals to control stomatal aperture in plants

De Smet I, Xu X, Praat M, Pizzio G, Jiang Z, Driever S, Wang R, de Cotte Bv, Villers S, Gevaert K, LEONHARDT N, Nelissen H, Kinoshita T, Vanneste S, Vu L

(2023/08) -

DOI
2147. Cytokinin Promotes Jasmonic Acid Accumulation in the Control of Maize Leaf Growth

Aimee N. Uyehara, Angel R. Del Valle-Echevarria, Charles T. Hunter, Hilde Nelissen, Kirin Demuynck, James F. Cahill, Zachary Gorman, Georg Jander, Michael G. Muszynski

(2023/08) - Plants

DOI
2146. Combining multiplex gene editing and doubled haploid technology in maize

Lennert Impens, Christian D. Lorenzo, Wout Vandeputte, Pieter Wytynck, Kevin Debray, Jari Haeghebaert, Denia Herwegh, Thomas B. Jacobs, Tom Ruttink, Hilde Nelissen, Dirk Inzé, Laurens Pauwels

(2023/08) - New Phytologist

DOI
2145. Plastid-localized amino acid metabolism coordinates rice ammonium tolerance and nitrogen use efficiency.

Xie Y, Lv Y, Jia L, Zheng L, Li Y, Zhu M, Tian M, Wang M, Qi W, Luo L, De Gernier H, Pélissier PM, Motte H, Lin S, Luo L, Xu G, Beeckman T, Xuan W

(2023/08) - Nature plants

DOI
2144. GOLVEN peptides regulate lateral root spacing as part of a negative feedback loop on the establishment of auxin maxima

Joris Jourquin, Ana Ibis Fernandez, Qing Wang, Ke Xu, Jian Chen, Jan Šimura, Karin Ljung, Steffen Vanneste, Tom Beeckman, Hideki Takahashi

(2023/08) - Journal of Experimental Botany

DOI
2143. Ocean current patterns drive the worldwide colonization of eelgrass (Zostera marina)

Lei Yu, Marina Khachaturyan, Michael Matschiner, Adam Healey, Diane Bauer, Brenda Cameron, Mathieu Cusson, J. Emmett Duffy, F. Joel Fodrie, Diana Gill, Jane Grimwood, Masakazu Hori, Kevin Hovel, A. Randall Hughes, Marlene Jahnke, Jerry Jenkins, Keykhosrow Keymanesh, Claudia Kruschel, Sujan Mamidi, Damian M. Menning, Per-Olav Moksnes, Masahiro Nakaoka, Christa Pennacchio, Katrin Reiss, Francesca Rossi, Jennifer L. Ruesink, Stewart T. Schultz, Sandra Talbot, Richard Unsworth, David H. Ward, Tal Dagan, Jeremy Schmutz, Jonathan A. Eisen, John J. Stachowicz, Yves Van de Peer, Jeanine L. Olsen, Thorsten B. H. Reusch

(2023/07) - Nature Plants

DOI
2142. Whole-genome Duplications and the Long-term Evolution of Gene Regulatory Networks in Angiosperms

Fabricio Almeida-Silva, Yves Van de Peer, Michael Purugganan

(2023/07) - Molecular Biology and Evolution

DOI
2141. Comprehensive regulatory networks for tomato organ development based on the genome and RNAome of MicroTom tomato.

Xue JY, Fan HY, Zeng Z, Zhou YH, Hu SY, Li SX, Cheng YJ, Meng XR, Chen F, Shao ZQ, Van de Peer Y

(2023/07) - Horticulture research

DOI
2140. Distinctive and complementary roles of E2F transcription factors during plant replication stress responses.

Nisa M, Eekhout T, Bergis C, Pedroza-Garcia JA, He X, Mazubert C, Vercauteren I, Cools T, Brik-Chaouche R, Drouin-Wahbi J, Chmaiss L, Latrasse D, Raynaud C

(2023/07) - Molecular plant

DOI
2139. Non‐specific effects of the CINNAMATE‐4‐HYDROXYLASE inhibitor piperonylic acid

Ilias El Houari, Petr Klíma, Alexandra Baekelandt, Paul E. Staswick, Veselina Uzunova, Charo I. Del Genio, Ward Steenackers, Petre I. Dobrev, Roberta Filepová, Ondrej Novák, Richard Napier, Jan Petrášek, Dirk Inzé, Wout Boerjan, Bartel Vanholme

(2023/07) - The Plant Journal

DOI
2138. TPLATE complex-dependent endocytosis attenuates CLAVATA1 signaling for shoot apical meristem maintenance.

Wang J, Jiang Q, Pleskot R, Grones P, Bahafid E, Denay G, Galván-Ampudia C, Xu X, Vandorpe M, Mylle E, De Smet I, Vernoux T, Simon R, Nowack MK, Van Damme D

(2023/07) - EMBO reports

DOI
2137. TPLATE complex-dependent endocytosis attenuates CLAVATA1 signaling for shoot apical meristem maintenance.

Wang J, Jiang Q, Pleskot R, Grones P, Bahafid E, Denay G, Galván-Ampudia C, Xu X, Vandorpe M, Mylle E, De Smet I, Vernoux T, Simon R, Nowack MK, Van Damme D

(2023/07) - EMBO reports

DOI
2136. How will I recognize you? Insights into endocytic cargo recognition in plants.

De Meyer A, Grones P, Van Damme D

(2023/07) - Current opinion in plant biology

DOI
2135. TPLATE complex-dependent endocytosis attenuates CLAVATA1 signaling for shoot apical meristem maintenance.

Wang J, Jiang Q, Pleskot R, Grones P, Bahafid E, Denay G, Galván-Ampudia C, Xu X, Vandorpe M, Mylle E, De Smet I, Vernoux T, Simon R, Nowack MK, Van Damme D

(2023/07) - EMBO reports

DOI
2134. Ulva: An emerging green seaweed model for systems biology

Jonas Blomme, Thomas Wichard, Thomas B. Jacobs, Olivier De Clerck

(2023/06) - Journal of Phycology

DOI
2133. Identification and characterization of CYP71 subclade cytochrome P450 enzymes involved in the biosynthesis of bitterness compounds in Cichorium intybus

Charlotte De Bruyn, Tom Ruttink, Elia Lacchini, Stephane Rombauts, Annelies Haegeman, Ellen De Keyser, Christof Van Poucke, Sandrien Desmet, Thomas B. Jacobs, Tom Eeckhaut, Alain Goossens, Katrijn Van Laere

(2023/06) - Frontiers in Plant Science

DOI
2132. A Cas3-base editing tool for targetable in vivo mutagenesis

Anna Zimmermann, Julian E. Prieto-Vivas, Charlotte Cautereels, Anton Gorkovskiy, Jan Steensels, Yves Van de Peer, Kevin J. Verstrepen

(2023/06) - Nature Communications

DOI
2131. A panoramic view of the genomic landscape of the genus Streptomyces

Marios Nikolaidis, Andrew Hesketh, Nikoletta Frangou, Dimitris Mossialos, Yves Van de Peer, Stephen G. Oliver, Grigorios D. Amoutzias

(2023/06) - Microbial Genomics

DOI
2130. Genomic Insights into Adaptation to Karst Limestone and Incipient Speciation in East Asian Platycarya spp. (Juglandaceae)

Yu Cao, Fabricio Almeida-Silva, Wei-Ping Zhang, Ya-Mei Ding, Dan Bai, Wei-Ning Bai, Bo-Wen Zhang, Yves Van de Peer, Da-Yong Zhang, Michael Purugganan

(2023/06) - Molecular Biology and Evolution

DOI
2129. Diploid and tetraploid genomes of Acorus and the evolution of monocots

Liang Ma, Ke-Wei Liu, Zhen Li, Yu-Yun Hsiao, Yiying Qi, Tao Fu, Guang-Da Tang, Diyang Zhang, Wei-Hong Sun, Ding-Kun Liu, Yuanyuan Li, Gui-Zhen Chen, Xue-Die Liu, Xing-Yu Liao, Yu-Ting Jiang, Xia Yu, Yang Hao, Jie Huang, Xue-Wei Zhao, Shijie Ke, You-Yi Chen, Wan-Lin Wu, Jui-Ling Hsu, Yu-Fu Lin, Ming-Der Huang, Chia-Ying Li, Laiqiang Huang, Zhi-Wen Wang, Xiang Zhao, Wen-Ying Zhong, Dong-Hui Peng, Sagheer Ahmad, Siren Lan, Ji-Sen Zhang, Wen-Chieh Tsai, Yves Van de Peer, Zhong-Jian Liu

(2023/06) - Nature Communications

DOI
2128. SIAMESE-RELATED1 imposes differentiation of stomatal lineage ground cells into pavement cells

Marieke Dubois, Ignacio Achon, Robert A. Brench, Stefanie Polyn, Rubén Tenorio Berrío, Ilse Vercauteren, Julie E. Gray, Dirk Inzé, Lieven De Veylder

(2023/06) - Nature Plants

DOI
2127. QT-GWAS: A novel method for unveiling biosynthetic loci affecting qualitative metabolic traits.

Brouckaert M, Peng M, Höfer R, El Houari I, Darrah C, Storme V, Saeys Y, Vanholme R, Goeminne G, Timokhin VI, Ralph J, Morreel K, Boerjan W

(2023/06) - Molecular plant

DOI
2126. Fertility loss in senescing Arabidopsis ovules is controlled by the maternal sporophyte via a NAC transcription factor triad

Matthias Van Durme, Yadira Olvera-Carrillo, Marie L. Pfeiffer, Nicolas M. Doll, Freya De Winter, Zongcheng Lin, Moritz K. Nowack

(2023/06) - Proceedings of the National Academy of Sciences

DOI
2125. Identification and characterization of CYP71 subclade cytochrome P450 enzymes involved in the biosynthesis of bitterness compounds in Cichorium intybus.

De Bruyn C, Ruttink T, Lacchini E, Rombauts S, Haegeman A, De Keyser E, Van Poucke C, Desmet S, Jacobs TB, Eeckhaut T, Goossens A, Van Laere K

(2023/06) - Frontiers in plant science

DOI
2124. Engineering the plant metabolic system by exploiting metabolic regulation

Sara Selma, Nikolaos Ntelkis, Trang Hieu Nguyen, Alain Goossens

(2023/06) - The Plant Journal

DOI
2123. A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis

Trang Hieu Nguyen, Louis Thiers, Alex Van Moerkercke, Yuechen Bai, Patricia Fernández-Calvo, Max Minne, Thomas Depuydt, Maite Colinas, Kevin Verstaen, Gert Van Isterdael, Hans-Wilhelm Nützmann, Anne Osbourn, Yvan Saeys, Bert De Rybel, Klaas Vandepoele, Andrés Ritter, Alain Goossens

(2023/05) - Nature Plants

DOI
2122. Oxidative stress responses in plants.

Van Breusegem F, Remacle C

(2023/05) - Free radical biology & medicine

DOI
2121. Structure-function study of a Ca²⁺-independent metacaspase involved in lateral root emergence.

Stael S, Sabljić I, Audenaert D, Andersson T, Tsiatsiani L, Kumpf RP, Vidal-Albalat A, Lindgren C, Vercammen D, Jacques S, Nguyen L, Njo M, Van Breusegem F

(2023/05) - Proceedings of the National Academy of Sciences of the United States of America

DOI
2120. Mutation of Arabidopsis SME1 and Sm core assembly improves oxidative stress resilience

Patrick Willems, Valerie Van Ruyskensvelde, Takanori Maruta, Robin Pottie, Álvaro D. Fernández-Fernández, Jarne Pauwels, Matthew A. Hannah, Kris Gevaert, Frank Van Breusegem, Katrien Van der Kelen

(2023/05) - Free Radical Biology and Medicine

DOI
2119. Paving the way towards future‐proofing our crops

Alexandra Baekelandt, Vandasue L. R. Saltenis, Philippe Nacry, Aleksandra Malyska, Marc Cornelissen, Amrit Kaur Nanda, Abhishek Nair, Peter Rogowsky, Laurens Pauwels, Bertrand Muller, Jonas Collén, Jonas Blomme, Mathias Pribil, Lars B. Scharff, Jessica Davies, Ralf Wilhelm, Norbert Rolland, Jeremy Harbinson, Wout Boerjan, Erik H. Murchie, Alexandra J. Burgess, Jean‐Pierre Cohan, Philippe Debaeke, Sébastien Thomine, Dirk Inzé, René Klein Lankhorst, Martin A. J. Parry

(2023/05) - Food and Energy Security

DOI
2118. Maximizing the production of high-value chemicals via fast-pyrolysis of lignin-engineered poplars: Impact of cinnamyl alcohol dehydrogenase 1 (hpCAD) downregulation

Liang Li, Florence H. Vermeire, Ruben Van de Vijver, Marlies Wouters, Wout Boerjan, Kevin M. Van Geem

(2023/05) - Journal of Analytical and Applied Pyrolysis

DOI
2117. Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression

Sam De Meyer, Daniel Felipe Cruz, Tom De Swaef, Peter Lootens, Jolien De Block, Kevin Bird, Heike Sprenger, Michael Van de Voorde, Stijn Hawinkel, Tom Van Hautegem, Dirk Inzé, Hilde Nelissen, Isabel Roldán-Ruiz, Steven Maere, Kiran Raosaheb Patil

(2023/05) - PLOS Computational Biology

DOI
2116. Unravelling the bacterial community composition of Valerianella locusta, a cold tolerant plant

Sonia Garcia Mendez, Antoine Persyn, Caroline De Tender, Sofie Goormachtig, Anne Willems

(2023/05) - Phytobiomes Journal

DOI
2115. Characterization of Arbuscular Mycorrhizal Effector Proteins

María V. Aparicio Chacón, Judith Van Dingenen, Sofie Goormachtig

(2023/05) - International Journal of Molecular Sciences

DOI
2114. It takes three to tango: citizen, fundamental and applied science

Lena Vlaminck, Birgit Vanden Berghen, Liesbet Vranken, Sofie Goormachtig

(2023/05) - Trends in Plant Science

DOI
2113. BRASSINOSTEROID INSENSITIVE1 internalization can occur independent of ligand binding.

Neubus Claus LA, Liu D, Hohmann U, Vukašinović N, Pleskot R, Liu J, Schiffner A, Jaillais Y, Wu G, Wolf S, Van Damme D, Hothorn M, Russinova E

(2023/05) - Plant physiology

DOI
2112. PlantACT! – how to tackle the climate crisis

Heribert Hirt, Salim Al-Babili, Marilia Almeida-Trapp, Antoine Martin, Manuel Aranda, Dorothea Bartels, Malcolm Bennett, Ikram Blilou, Damian Boer, Alix Boulouis, Chris Bowler, Sophie Brunel-Muguet, Fabien Chardon, Jean Colcombet, Vincent Colot, Agata Daszkowska-Golec, Jose R. Dinneny, Ben Field, Katja Froehlich, Catherine H. Gardener, Alain Gojon, Eric Gomès, Eva María Gomez-Alvarez, Crisanto Gutierrez, Michel Havaux, Scott Hayes, Edith Heard, Michael Hodges, Amal Khalaf Alghamdi, Laurent Laplaze, Kyle J. Lauersen, Nathalie Leonhardt, Xenie Johnson, Jonathan Jones, Hannes Kollist, Stanislav Kopriva, Anne Krapp, Mauricio Lopez-Portillo Masson, Matthew F. McCabe, Livia Merendino, Antonio Molina, Jose L. Moreno Ramirez, Bernd Mueller-Roeber, Michael Nicolas, Ido Nir, Izamar Olivas Orduna, Jose M. Pardo, Jean-Philippe Reichheld, Pedro L. Rodriguez, Hatem Rouached, Maged M. Saad, Ive De Smet

(2023/05) - Trends in Plant Science

DOI
2111. Dynamic GOLVEN-ROOT GROWTH FACTOR 1 INSENSITIVE signaling in the root cap mediates root gravitropism

Ke Xu, Joris Jourquin, Xiangyu Xu, Ive De Smet, Ana I Fernandez, Tom Beeckman

(2023/05) - Plant Physiology

DOI
2110. A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis.

Nguyen TH, Thiers L, Van Moerkercke A, Bai Y, Fernández-Calvo P, Minne M, Depuydt T, Colinas M, Verstaen K, Van Isterdael G, Nützmann HW, Osbourn A, Goossens A

(2023/05) - Nature plants

DOI
2109. MINI-AC: Inference of plant gene regulatory networks using bulk or single-cell accessible chromatin profiles

Nicolás Manosalva Pérez, Camilla Ferrari, Julia Engelhorn, Thomas Depuydt, Hilde Nelissen, Thomas Hartwig, Klaas Vandepoele

(2023/05) -

DOI
2108. The cutting edge of grass leaves.

Zhang J, Nelissen H

(2023/05) - Nature plants

DOI
2107. Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression.

De Meyer S, Cruz DF, De Swaef T, Lootens P, De Block J, Bird K, Sprenger H, Van de Voorde M, Hawinkel S, Van Hautegem T, Inzé D, Nelissen H, Maere S

(2023/05) - PLoS computational biology

DOI
2106. Structure–function study of a Ca ²⁺ -independent metacaspase involved in lateral root emergence

Simon Stael, Igor Sabljić, Dominique Audenaert, Thilde Andersson, Liana Tsiatsiani, Robert P. Kumpf, Andreu Vidal-Albalat, Cecilia Lindgren, Dominique Vercammen, Silke Jacques, Long Nguyen, Maria Njo, Álvaro D. Fernández-Fernández, Tine Beunens, Evy Timmerman, Kris Gevaert, Marc Van Montagu, Jerry Ståhlberg, Peter V. Bozhkov, Anna Linusson, Tom Beeckman, Frank Van Breusegem

(2023/05) - Proceedings of the National Academy of Sciences

DOI
2105. Dynamic GOLVEN-ROOT GROWTH FACTOR 1 INSENSITIVE signaling in the root cap mediates root gravitropism

Ke Xu, Joris Jourquin, Xiangyu Xu, Ive De Smet, Ana I Fernandez, Tom Beeckman

(2023/05) - Plant Physiology

DOI
2104. SMAP design: a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

Ward Develtere, Evelien Waegneer, Kevin Debray, Jonas De Saeger, Sabine Van Glabeke, Steven Maere, Tom Ruttink, Thomas B Jacobs

(2023/04) - Nucleic Acids Research

DOI
2103. Standing genetic variation fuels rapid evolution of herbicide resistance in blackgrass.

Kersten S, Chang J, Huber CD, Voichek Y, Lanz C, Hagmaier T, Lang P, Lutz U, Hirschberg I, Lerchl J, Porri A, Van de Peer Y, Schmid K, Weigel D, Rabanal FA

(2023/04) - Proceedings of the National Academy of Sciences of the United States of America

DOI
2102. Analyses of a chromosome-scale genome assembly reveal the origin and evolution of cultivated chrysanthemum.

Song A, Su J, Wang H, Zhang Z, Zhang X, Van de Peer Y, Chen F, Fang W, Guan Z, Zhang F, Wang Z, Wang L, Ding B, Zhao S, Ding L, Liu Y, Zhou L, He J, Chen F

(2023/04) - Nature communications

DOI
2101. PAT1-type GRAS-domain proteins control regeneration by activating DOF3.4 to drive cell proliferation in Arabidopsis roots

Anchal Bisht, Thomas Eekhout, Balkan Canher, Ran Lu, Ilse Vercauteren, Geert De Jaeger, Jefri Heyman, Lieven De Veylder

(2023/04) - The Plant Cell

DOI
2100. Mechanisms controlling plant proteases and their substrates

Álvaro Daniel Fernández-Fernández, Simon Stael, Frank Van Breusegem

(2023/04) - Cell Death & Differentiation

DOI
2099. Cysteine thiol-based post-translational modification: What do we know about transcription factors?

Heng Zhou, Jingjing Huang, Patrick Willems, Frank Van Breusegem, Yanjie Xie

(2023/04) - Trends in Plant Science

DOI
2098. Editorial: #ArtGenetics - looking at art to trace plant evolution.

De Smet I, Vergauwen D

(2023/04) - Frontiers in plant science

DOI
2097. The CIPK23 protein kinase represses SLAC1‐type anion channels in Arabidopsis guard cells and stimulates stomatal opening

Shouguang Huang, Tobias Maierhofer, Kenji Hashimoto, Xiangyu Xu, Sohail M. Karimi, Heike Müller, Michael A. Geringer, Yi Wang, Jörg Kudla, Ive De Smet, Rainer Hedrich, Dietmar Geiger, M. Rob G. Roelfsema

(2023/04) - New Phytologist

DOI
2096. PhenoWell®—A novel screening system for soil-grown plants

Ji Li, Michael A. C. Mintgen, Sam D'Haeyer, Anne Helfer, Hilde Nelissen, Dirk Inzé, Stijn Dhondt

(2023/04) - Plant-Environment Interactions

DOI
2095. The transcription factor AtMYB12 is part of a feedback loop regulating cell division orientation in the root meristem vasculature.

Wybouw B, Arents HE, Yang B, Nolf J, Smet W, Vandorpe M, Minne M, Luo X, De Clercq I, Van Damme D, Glanc M, De Rybel B

(2023/03) - Journal of experimental botany

DOI
2094. Neutral processes underlying the macro eco-evolutionary dynamics of mixed-ploidy systems.

Kauai F, Mortier F, Milosavljevic S, Van de Peer Y, Bonte D

(2023/03) - Proceedings. Biological sciences

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2093. SCARECROW‐LIKE28 modulates organ growth in Arabidopsis by controlling mitotic cell cycle exit, endoreplication, and cell expansion dynamics

Camila Goldy, Virginia Barrera, Isaiah Taylor, Celeste Buchensky, Rodrigo Vena, Philip N. Benfey, Lieven De Veylder, Ramiro E. Rodriguez

(2023/03) - New Phytologist

DOI
2092. Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division

Alex Willems, Yuanke Liang, Jefri Heyman, Thomas Depuydt, Thomas Eekhout, Balkan Canher, Hilde Van den Daele, Ilse Vercauteren, Klaas Vandepoele, Lieven De Veylder

(2023/03) - Plant Physiology

DOI
2091. Endoplasmic reticulum–bound ANAC013 factor is cleaved by RHOMBOID-LIKE 2 during the initial response to hypoxia in Arabidopsis thaliana

Emese Eysholdt-Derzsó, Tilo Renziehausen, Stephanie Frings, Stephanie Frohn, Kira von Bongartz, Clara P. Igisch, Justina Mann, Lisa Häger, Julia Macholl, David Leisse, Niels Hoffmann, Katharina Winkels, Pia Wanner, Jonas De Backer, Xiaopeng Luo, Margret Sauter, Inge De Clercq, Joost T. van Dongen, Jos H. M. Schippers, Romy R. Schmidt-Schippers

(2023/03) - Proceedings of the National Academy of Sciences

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2090. The transcription factor AtMYB12 is part of a feedback loop regulating cell division orientation in the root meristem vasculature

Brecht Wybouw, Helena E Arents, Baojun Yang, Jonah Nolf, Wouter Smet, Michael Vandorpe, Max Minne, Xiaopeng Luo, Inge De Clercq, Daniël Van Damme, Matouš Glanc, Bert De Rybel, Simon Turner

(2023/03) - Journal of Experimental Botany

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2089. The transcription factor AtMYB12 is part of a feedback loop regulating cell division orientation in the root meristem vasculature

Brecht Wybouw, Helena E Arents, Baojun Yang, Jonah Nolf, Wouter Smet, Michael Vandorpe, Max Minne, Xiaopeng Luo, Inge De Clercq, Daniël Van Damme, Matouš Glanc, Bert De Rybel, Simon Turner

(2023/03) - Journal of Experimental Botany

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2088. The saponin bomb: a nucleolar-localized β-glucosidase hydrolyzes triterpene saponins in Medicago truncatula.

Lacchini E, Erffelinck ML, Mertens J, Marcou S, Molina-Hidalgo FJ, Tzfadia O, Venegas-Molina J, Cárdenas PD, Pollier J, Tava A, Bak S, Höfte M, Goossens A

(2023/03) - The New phytologist

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2087. Specification and evolution of lateral roots.

Lakehal A, Dob A, Beeckman T

(2023/03) - Current biology : CB

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2086. Accelerating wood domestication in forest trees through genome editing: Advances and prospects

Chantal Anders, Lennart Hoengenaert, Wout Boerjan

(2023/02) - Current Opinion in Plant Biology

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2085. The immediate effects of polyploidization of Spirodela polyrhiza change in a strain-specific way along environmental gradients

Quinten Bafort, Tian Wu, Annelore Natran, Olivier De Clerck, Yves Van de Peer

(2023/02) - Evolution Letters

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2084. Revisiting ancient polyploidy in leptosporangiate ferns

Hengchi Chen, Yuhan Fang, Arthur Zwaenepoel, Sanwen Huang, Yves Van de Peer, Zhen Li

(2023/02) - New Phytologist

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2083. The Saururus chinensis genome provides insights into the evolution of pollination strategies and herbaceousness in magnoliids.

Xue JY, Li Z, Hu SY, Kao SM, Zhao T, Wang JY, Wang Y, Chen M, Qiu Y, Fan HY, Liu Y, Shao ZQ, Van de Peer Y

(2023/02) - The Plant journal : for cell and molecular biology

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2082. Reassessing the claimed cytokinin-substituting activity of dehydrodiconiferyl alcohol glucoside.

Witvrouw K, Kim H, Vanholme R, Goeminne G, Ralph J, Boerjan W, Vanholme B

(2023/02) - Proceedings of the National Academy of Sciences of the United States of America

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2081. From prediction to function: Current practices and challenges towards the functional characterization of type III effectors.

De Ryck J, Van Damme P, Goormachtig S

(2023/02) - Frontiers in Microbiology

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2080. Repressive ZINC FINGER OF ARABIDOPSIS THALIANA proteins promote programmed cell death in the Arabidopsis columella root cap

Qiangnan Feng, Marta Cubría-Radío, Tereza Vavrdová, Freya De Winter, Neeltje Schilling, Marlies Huysmans, Amrit K Nanda, Charles W Melnyk, Moritz K Nowack

(2023/02) - Plant Physiology

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2079. Spatial and temporal regulation of parent-of-origin allelic expression in the endosperm.

Yuri Stephan van Ekelenburg, Karina Hornslien, Tom Van Hautegem, Matyas Fendrych, Gert Van Isterdael, Katrine N. Bjerkan, Jason R. Miller, Moritz Nowack, Norbert BOLLIER, Paul E. Grini

(2023/02) - Plant Physiology

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2078. The Non-JAZ TIFY Protein TIFY8 of Arabidopsis thaliana Interacts with the HD-ZIP III Transcription Factor REVOLUTA and Regulates Leaf Senescence.

Andrade Galan AG, Doll J, Saile SC, Wünsch M, Roepenack-Lahaye EV, Pauwels L, Goossens A, Bresson J, Zentgraf U

(2023/02) - International journal of molecular sciences

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2077. Systematic optimization of Cas12a base editors in wheat and maize using the ITER platform

Christophe Gaillochet, Alexandra Peña Fernández, Vera Goossens, Katelijn D’Halluin, Andrzej Drozdzecki, Myriam Shafie, Julie Van Duyse, Gert Van Isterdael, Camila Gonzalez, Mattias Vermeersch, Jonas De Saeger, Ward Develtere, Dominique Audenaert, David De Vleesschauwer, Frank Meulewaeter, Thomas B. Jacobs

(2023/01) - Genome Biology

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2076. BREEDIT: a multiplex genome editing strategy to improve complex quantitative traits in maize

Christian Damian Lorenzo, Kevin Debray, Denia Herwegh, Ward Develtere, Lennert Impens, Dries Schaumont, Wout Vandeputte, Stijn Aesaert, Griet Coussens, Yara De Boe, Kirin Demuynck, Tom Van Hautegem, Laurens Pauwels, Thomas B Jacobs, Tom Ruttink, Hilde Nelissen, Dirk Inzé

(2023/01) - The Plant Cell

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2075. Single Cell RNA-Sequencing in Arabidopsis Root Tissues.

Ke Y, Minne M, Eekhout T, De Rybel B

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2074. The genome of the king protea, Protea cynaroides

Jiyang Chang, Tuan A. Duong, Cassandra Schoeman, Xiao Ma, Danielle Roodt, Nigel Barker, Zhen Li, Yves Van de Peer, Eshchar Mizrachi

(2023/01) - The Plant Journal

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2073. syntenet: an R/Bioconductor package for the inference and analysis of synteny networks.

Almeida-Silva F, Zhao T, Ullrich KK, Schranz ME, Van de Peer Y

(2023/01) - Bioinformatics (Oxford, England)

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2072. Inference of Ancient Polyploidy Using Transcriptome Data.

Li J, Van de Peer Y, Li Z

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2071. Studying Whole-Genome Duplication Using Experimental Evolution of Chlamydomonas.

Bafort Q, Prost L, Aydogdu E, Van de Vloet A, Casteleyn G, Van de Peer Y, De Clerck O

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2070. Studying Whole-Genome Duplication Using Experimental Evolution of Spirodela polyrhiza.

Wu T, Natran A, Prost L, Aydogdu E, Van de Peer Y, Bafort Q

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2069. Evolution of wound-activated regeneration pathways in the plant kingdom.

Liang Y, Heyman J, Lu R, De Veylder L

(2023/01) - European journal of cell biology

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2068. Detection and Quantification of Protein Aggregates in Plants.

Phukan UJ, Stael S, Gonçalves A, Van Breusegem F, Coll NS

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2067. Quantitative Measurements of Biochemical and Molecular Markers of Oxidative Stress Signaling and Responses.

Noctor G, Cohen M, Trémulot L, Van Breusegem F, Mhamdi A

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2066. Metabolite modification in oxidative stress responses: A case study of two defense hormones.

Lelarge-Trouverie C, Cohen M, Trémulot L, Van Breusegem F, Mhamdi A, Noctor G

(2023/01) - Free radical biology & medicine

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2065. Downregulation of barley ferulate 5-hydroxylase dramatically alters straw lignin structure without impact on mechanical properties.

Shafiei R, Hooper M, McClellan C, Oakey H, Stephens J, Lapierre C, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C

(2023/01) - Frontiers in plant science

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2064. SMAP design: a multiplex PCR amplicon and gRNA design tool to screen for natural and CRISPR-induced genetic variation

Ward Develtere, Evelien Waegneer, Kevin Debray, Jonas De Saeger, Sabine Van Glabeke, Steven Maere, Tom Ruttink, Thomas B Jacobs

(2023/01) - Nucleic Acids Research

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2063. Adaptor protein complex interaction map in Arabidopsis identifies P34 as a common stability regulator

Peng Wang, Wei Siao, Xiuyang Zhao, Deepanksha Arora, Ren Wang, Dominique Eeckhout, Jelle Van Leene, Rahul Kumar, Anaxi Houbaert, Nancy De Winne, Evelien Mylle, Michael Vandorpe, Ruud A. Korver, Christa Testerink, Kris Gevaert, Steffen Vanneste, Geert De Jaeger, Daniël Van Damme, Eugenia Russinova

(2023/01) - Nature Plants

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2062. Auxin-Responsive (Phospho)proteome Analysis Reveals Key Biological Processes and Signaling Associated with Shoot-Borne Crown Root Development in Rice.

Singh H, Singh Z, Zhu T, Xu X, Waghmode B, Garg T, Yadav S, Sircar D, De Smet I, Yadav SR

(2023/01) - Plant & cell physiology

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2061. Targeted Profiling of Protein Phosphorylation in Plants.

Xu X, Gevaert K, De Smet I, Vu LD

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2060. Identification of Plant Protein-Metabolite Interactions by Limited Proteolysis-Coupled Mass Spectrometry (LiP-MS).

Venegas-Molina J, Van Damme P, Goossens A

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2059. Cataloguing Protein Complexes In Planta Using TurboID-Catalyzed Proximity Labeling.

Gryffroy L, De Ryck J, Jonckheere V, Goormachtig S, Goossens A, Van Damme P

(2023/01) - Methods in molecular biology (Clifton, N.J.)

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2058. Rhizogenic Agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development.

Gryffroy L, Ceulemans E, Manosalva Pérez N, Venegas-Molina J, Jaramillo-Madrid AC, Rodrigues SD, De Milde L, Jonckheere V, Van Montagu M, Goossens A

(2023/01) - Proceedings of the National Academy of Sciences of the United States of America

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2057. Burning questions for a warming and changing world: 15 unknowns in plant abiotic stress

Paul E Verslues, Julia Bailey-Serres, Craig Brodersen, Thomas N Buckley, Lucio Conti, Alexander Christmann, José R Dinneny, Erwin Grill, Scott Hayes, Robert W Heckman, Po-Kai Hsu, Thomas E Juenger, Paloma Mas, Teun Munnik, Hilde Nelissen, Lawren Sack, Julian I Schroeder, Christa Testerink, Stephen D Tyerman, Taishi Umezawa, Philip A Wigge

(2023/01) - The Plant Cell

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2056. BREEDIT: a multiplex genome editing strategy to improve complex quantitative traits in maize

Christian Damian Lorenzo, Kevin Debray, Denia Herwegh, Ward Develtere, Lennert Impens, Dries Schaumont, Wout Vandeputte, Stijn Aesaert, Griet Coussens, Yara De Boe, Kirin Demuynck, Tom Van Hautegem, Laurens Pauwels, Thomas B Jacobs, Tom Ruttink, Hilde Nelissen, Dirk Inzé

(2023/01) - The Plant Cell

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2055. Improving crop yield potential: Underlying biological processes and future prospects

Alexandra J. Burgess, Céline Masclaux‐Daubresse, Günter Strittmatter, Andreas P. M. Weber, Samuel Harry Taylor, Jeremy Harbinson, Xinyou Yin, Stephen Long, Matthew J. Paul, Peter Westhoff, Francesco Loreto, Aldo Ceriotti, Vandasue L. R. Saltenis, Mathias Pribil, Philippe Nacry, Lars B. Scharff, Poul Erik Jensen, Bertrand Muller, Jean‐Pierre Cohan, John Foulkes, Peter Rogowsky, Philippe Debaeke, Christian Meyer, Hilde Nelissen, Dirk Inzé, René Klein Lankhorst, Martin A. J. Parry, Erik H. Murchie, Alexandra Baekelandt

(2023/01) - Food and Energy Security

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2054. ABCB-mediated shootward auxin transport feeds into the root clock.

Chen J, Hu Y, Hao P, Tsering T, Xia J, Zhang Y, Roth O, Njo MF, Sterck L, Hu Y, Zhao Y, Geelen D, Geisler M, Shani E, Beeckman T, Vanneste S

(2023/01) - EMBO reports

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2053. Polyploidy

Yves Van de Peer

(2023) - Springer US

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2052. Cataloguing Protein Complexes In Planta Using TurboID-Catalyzed Proximity Labeling

Lore Gryffroy, Joren De Ryck, Veronique Jonckheere, Sofie Goormachtig, Alain Goossens, Petra Van Damme

(2023) - Methods in Molecular Biology

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2051. A Simple and Low‐Tech Heat‐Shock Method to Increase Genome Editing Efficiency in Plants

Jonas Blomme, Júlia Arraiza Ribera, Ward Develtere, Thomas B. Jacobs

(2022/12) - Current Protocols

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2050. The heat is on: a simple method to increase genome editing efficiency in plants

Jonas Blomme, Ward Develtere, Ayse Köse, Júlia Arraiza Ribera, Christophe Brugmans, Jessica Jaraba-Wallace, Ward Decaestecker, Debbie Rombaut, Alexandra Baekelandt, Álvaro Daniel Fernández Fernández, Frank Van Breusegem, Dirk Inzé, Thomas Jacobs

(2022/12) - BMC Plant Biology

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2049. The endocytic TPLATE complex internalizes ubiquitinated plasma membrane cargo.

Grones P, De Meyer A, Pleskot R, Mylle E, Kraus M, Vandorpe M, Yperman K, Eeckhout D, Dragwidge JM, Jiang Q, Nolf J, Pavie B, De Jaeger G, De Rybel B, Van Damme D

(2022/12) - Nature plants

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2048. Endoreplication mediates cell size control via mechanochemical signaling from cell wall

Yuan Ma, Kristoffer Jonsson, Bibek Aryal, Lieven De Veylder, Olivier Hamant, Rishikesh P. Bhalerao

(2022/12) - Science Advances

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2047. The heat is on: a simple method to increase genome editing efficiency in plants

Jonas Blomme, Ward Develtere, Ayse Köse, Júlia Arraiza Ribera, Christophe Brugmans, Jessica Jaraba-Wallace, Ward Decaestecker, Debbie Rombaut, Alexandra Baekelandt, Álvaro Daniel Fernández Fernández, Frank Van Breusegem, Dirk Inzé, Thomas Jacobs

(2022/12) - BMC Plant Biology

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2046. To Be or Not to Be? Are Reactive Oxygen Species, Antioxidants, and Stress Signalling Universal Determinants of Life or Death?

Magdalena Szechyńska-Hebda, Roshanak Zarrin Ghalami, Muhammad Kamran, Frank Van Breusegem, Stanisław Karpiński

(2022/12) - Cells

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2045. Field and saccharification performances of poplars severely downregulated in CAD1

Barbara De Meester, Rebecca Van Acker, Marlies Wouters, Silvia Traversari, Marijke Steenackers, Jenny Neukermans, Frank Van Breusegem, Annabelle Déjardin, Gilles Pilate, Wout Boerjan

(2022/12) - New Phytologist

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2044. Functionally annotating cysteine disulfides and metal binding sites in the plant kingdom using AlphaFold2 predicted structures.

Willems P, Huang J, Messens J, Van Breusegem F

(2022/12) - Free radical biology & medicine

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2043. Accelerating wood domestication in forest trees through genome editing: Advances and prospects.

Anders C, Hoengenaert L, Boerjan W

(2022/12) - Current opinion in plant biology

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2042. The endocytic TPLATE complex internalizes ubiquitinated plasma membrane cargo

Peter Grones, Andreas De Meyer, Roman Pleskot, Evelien Mylle, Michael Kraus, Michael Vandorpe, Klaas Yperman, Dominique Eeckhout, Jonathan Michael Dragwidge, Qihang Jiang, Jonah Nolf, Benjamin Pavie, Geert De Jaeger, Bert De Rybel, Daniël Van Damme

(2022/12) - Nature Plants

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2041. Clustered regularly interspaced short palindromic repeats tools for plant metabolic engineering: achievements and perspectives.

Selma S, Ceulemans E, Goossens A, Lacchini E

(2022/12) - Current opinion in biotechnology

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2040. Corrigendum: Interference between ER stress-related bZIP-type and jasmonate-inducible bHLH-type transcription factors in the regulation of triterpene saponin biosynthesis in Medicago truncatula.

Ribeiro B, Erffelinck ML, Lacchini E, Ceulemans E, Colinas M, Williams C, Van Hamme E, De Clercq R, Perassolo M, Goossens A

(2022/12) - Frontiers in plant science

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2039. Evolution of isoform‐level gene expression patterns across tissues during lotus species divergence

Yue Zhang, Xingyu Yang, Yves Van de Peer, Jinming Chen, Kathleen Marchal, Tao Shi

(2022/11) - The Plant Journal

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2038. Mapping of the plant SnRK1 kinase signalling network reveals a key regulatory role for the class II T6P synthase-like proteins

Jelle Van Leene, Dominique Eeckhout, Astrid Gadeyne, Caroline Matthijs, Chao Han, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Freya Persyn, Toon Mertens, Wouter Smagghe, Nathalie Crepin, Ellen Broucke, Daniël Van Damme, Roman Pleskot, Filip Rolland, Geert De Jaeger

(2022/11) - Nature Plants

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2037. Wandering between hot and cold: temperature dose-dependent responses

Tingting Zhu, Martijn van Zanten, Ive De Smet

(2022/11) - Trends in Plant Science

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2036. Identification of growth regulators using cross-species network analysis in plants

Pasquale Luca Curci, Jie Zhang, Niklas Mähler, Carolin Seyfferth, Chanaka Mannapperuma, Tim Diels, Tom Van Hautegem, David Jonsen, Nathaniel Street, Torgeir R Hvidsten, Magnus Hertzberg, Ove Nilsson, Dirk Inzé, Hilde Nelissen, Klaas Vandepoele

(2022/11) - Plant Physiology

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2035. Hydraulic flux–responsive hormone redistribution determines root branching

Poonam Mehra, Bipin K. Pandey, Dalia Melebari, Jason Banda, Nicola Leftley, Valentin Couvreur, James Rowe, Moran Anfang, Hugues De Gernier, Emily Morris, Craig J. Sturrock, Sacha J. Mooney, Ranjan Swarup, Christine Faulkner, Tom Beeckman, Rishikesh P. Bhalerao, Eilon Shani, Alexander M. Jones, Ian C. Dodd, Robert E. Sharp, Ari Sadanandom, Xavier Draye, Malcolm J. Bennett

(2022/11) - Science

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2034. Cellular and gene expression patterns associated with root bifurcation in Selaginella

Hans Motte, Tao Fang, Boris Parizot, Wouter Smet, Xilan Yang, Ward Poelmans, Liam Walker, Maria Njo, George W Bassel, Tom Beeckman

(2022/11) - Plant Physiology

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2033. bHLH heterodimer complex variations regulate cell proliferation activity in the meristems of Arabidopsis thaliana.

Mor E, Pernisová M, Minne M, Cerutti G, Ripper D, Nolf J, Andres J, Ragni L, Zurbriggen MD, De Rybel B, Vernoux T

(2022/10) - iScience

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2032. Charting plant gene functions in the multi-omics and single-cell era.

Depuydt T, De Rybel B, Vandepoele K

(2022/10) - Trends in plant science

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2031. The regeneration factors ERF114 and ERF115 regulate auxin-mediated lateral root development in response to mechanical cues

Balkan Canher, Fien Lanssens, Ai Zhang, Anchal Bisht, Shamik Mazumdar, Jefri Heyman, Sebastian Wolf, Charles W. Melnyk, Lieven De Veylder

(2022/10) - Molecular Plant

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2030. Transcriptional activation of auxin biosynthesis drives developmental reprogramming of differentiated cells

Yuki Sakamoto, Ayako Kawamura, Takamasa Suzuki, Shoji Segami, Masayoshi Maeshima, Stefanie Polyn, Lieven De Veylder, Keiko Sugimoto

(2022/10) - The Plant Cell

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2029. Reactive oxygen species signalling in plant stress responses

Ron Mittler, Sara I. Zandalinas, Yosef Fichman, Frank Van Breusegem

(2022/10) - Nature Reviews Molecular Cell Biology

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2028. ROS and redox regulation of cell-to-cell and systemic signaling in plants during stress.

Peláez-Vico MÁ, Fichman Y, Zandalinas SI, Van Breusegem F, Karpiński SM, Mittler R

(2022/10) - Free radical biology & medicine

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2027. Transcriptional and metabolic changes associated with internode development and reduced cinnamyl alcohol dehydrogenase activity in sorghum.

Ferreira SS, Goeminne G, Simões MS, Pina AVA, Lima LGA, Pezard J, Gutiérrez A, Rencoret J, Mortimer JC, Del Río JC, Boerjan W, Cesarino I

(2022/10) - Journal of experimental botany

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2026. Lignin engineering in forest trees: From gene discovery to field trials.

De Meester B, Vanholme R, Mota T, Boerjan W

(2022/10) - Plant communications

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2025. MAX2-dependent competence for callus formation and shoot regeneration from Arabidopsis thaliana root explants

Arne Temmerman, Belen Marquez-Garcia, Stephen Depuydt, Silvia Bruznican, Carolien De Cuyper, Annick De Keyser, François-Didier Boyer, Danny Vereecke, Sylwia Struk, Sofie Goormachtig, Pilar Cubas

(2022/10) - Journal of Experimental Botany

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2024. Killing me softly - Programmed cell death in plant reproduction from sporogenesis to fertilization

Fei Xie, Hannah Vahldick, Zongcheng Lin, Moritz K. Nowack

(2022/10) - Current Opinion in Plant Biology

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2023. Engineering a highly sensitive biosensor for abscisic acid in mammalian cells

Seo Woo Kim, Kübra Alci, Femke Van Gaever, Yasmine Driege, Keylla Bicalho, Geert Goeminne, Claude Libert, Alain Goossens, Rudi Beyaert, Jens Staal

(2022/10) - FEBS Letters

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2022. The translatability of genetic networks from model to crop species: lessons from the past and perspectives for the future

Dirk Inzé, Hilde Nelissen

(2022/10) - New Phytologist

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2021. Predicting yield traits of individual field-grownBrassica napusplants from rosette-stage leaf gene expression

De Meyer S, Cruz DF, De Swaef T, Lootens P, De Block J, Bird K, Sprenger H, Van de Voorde M, Hawinkel S, Van Hautegem T, Inzé D, Nelissen H, Maere S

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2020. The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences

Yuhan Fang, Xing Qin, Qinggang Liao, Ran Du, Xizhi Luo, Qian Zhou, Zhen Li, Hengchi Chen, Wanting Jin, Yaning Yuan, Pengbo Sun, Rui Zhang, Jiao Zhang, Li Wang, Shifeng Cheng, Xueyong Yang, Yuehong Yan, Xingtan Zhang, Zhonghua Zhang, Shunong Bai, Yves Van de Peer, William John Lucas, Sanwen Huang, Jianbin Yan

(2022/09) - Nature Plants

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2019. Chromosome‐scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication

Jiyang Chang, Juan Pablo Marczuk‐Rojas, Carrie Waterman, Armando Garcia‐Llanos, Shiyu Chen, Xiao Ma, Amanda Hulse‐Kemp, Allen Van Deynze, Yves Van de Peer, Lorenzo Carretero‐Paulet

(2022/09) - The Plant Genome

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2018. Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

Renhai Peng, Yanchao Xu, Shilin Tian, Turgay Unver, Zhen Liu, Zhongli Zhou, Xiaoyan Cai, Kunbo Wang, Yangyang Wei, Yuling Liu, Heng Wang, Guanjing Hu, Zhongren Zhang, Corrinne E. Grover, Yuqing Hou, Yuhong Wang, Pengtao Li, Tao Wang, Quanwei Lu, Yuanyuan Wang, Justin L. Conover, Hassan Ghazal, Qinglian Wang, Baohong Zhang, Marc Van Montagu, Yves Van de Peer, Jonathan F. Wendel, Fang Liu

(2022/09) - Proceedings of the National Academy of Sciences

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2017. Adenosine monophosphate deaminase modulates BIN2 activity through hydrogen peroxide-induced oligomerization

Qing Lu, Anaxi Houbaert, Qian Ma, Jingjing Huang, Lieven Sterck, Cheng Zhang, René Benjamins, Frederik Coppens, Frank Van Breusegem, Eugenia Russinova

(2022/09) - The Plant Cell

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2016. Editorial: Plant protein termini: Their generation, modification and function.

Willems P, Huesgen PF, Finkemeier I, Graciet E, Meinnel T, Van Breusegem F

(2022/09) - Frontiers in plant science

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2015. Whole genome duplication of wild-type and CINNAMYL ALCOHOL DEHYDROGENASE1-downregulated hybrid poplar reduces biomass yield and causes a brittle apex phenotype in field-grown wild types.

Wouters M, Corneillie S, Dewitte A, Van Doorsselaere J, Van den Bulcke J, Van Acker J, Vanholme B, Boerjan W

(2022/09) - Frontiers in plant science

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2014. Histidine kinase inhibitors impair shoot regeneration in Arabidopsis thaliana via cytokinin signaling and SAM patterning determinants.

Lardon R, Trinh HK, Xu X, Vu LD, Van De Cotte B, Pernisová M, Vanneste S, De Smet I, Geelen D

(2022/09) - Frontiers in plant science

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2013. Small secreted peptides encoded on the wheat (triticum aestivum L.) genome and their potential roles in stress responses.

Tian D, Xie Q, Deng Z, Xue J, Li W, Zhang Z, Dai Y, Zheng B, Lu T, De Smet I, Guo Y

(2022/09) - Frontiers in plant science

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2012. Interference between ER stress-related bZIP-type and jasmonate-inducible bHLH-type transcription factors in the regulation of triterpene saponin biosynthesis in Medicago truncatula.

Ribeiro B, Erffelinck ML, Lacchini E, Ceulemans E, Colinas M, Williams C, Van Hamme E, De Clercq R, Perassolo M, Goossens A

(2022/09) - Frontiers in plant science

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2011. Deep origin and gradual evolution of transporting tissues: Perspectives from across the land plants.

Woudenberg S, Renema J, Tomescu AMF, De Rybel B, Weijers D

(2022/08) - Plant physiology

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2010. The wound-activated ERF15 transcription factor drives Marchantia polymorpha regeneration by activating an oxylipin biosynthesis feedback loop

Yuanke Liang, Jefri Heyman, Yanli Xiang, Wiske Vandendriessche, Balkan Canher, Geert Goeminne, Lieven De Veylder

(2022/08) - Science Advances

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2009. Field and saccharification performances of poplars severely downregulated in CAD1.

De Meester B, Van Acker R, Wouters M, Traversari S, Steenackers M, Neukermans J, Van Breusegem F, Déjardin A, Pilate G, Boerjan W

(2022/08) - The New phytologist

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2008. The basic helix-loop-helix transcription factors MYC1 and MYC2 have a dual role in the regulation of constitutive and stress-inducible specialized metabolism in tomato.

Swinnen G, De Meyer M, Pollier J, Molina-Hidalgo FJ, Ceulemans E, Venegas-Molina J, De Milde L, Fernández-Calvo P, Ron M, Pauwels L, Goossens A

(2022/08) - The New phytologist

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2007. Overexpression of the scopoletin biosynthetic pathway enhances lignocellulosic biomass processing

Lennart Hoengenaert, Marlies Wouters, Hoon Kim, Barbara De Meester, Kris Morreel, Steven Vandersyppe, Jacob Pollier, Sandrien Desmet, Geert Goeminne, John Ralph, Wout Boerjan, Ruben Vanholme

(2022/07) - Science Advances

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2006. The Larix kaempferi genome reveals new insights into wood properties

Chao Sun, Yun‐Hui Xie, Zhen Li, Yan‐Jing Liu, Xiao‐Mei Sun, Jing‐Jing Li, Wei‐Peng Quan, Qing‐Yin Zeng, Yves Van de Peer, Shou‐Gong Zhang

(2022/07) - Journal of Integrative Plant Biology

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2005. Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe).

Zhang T, Qiao Q, Du X, Zhang X, Hou Y, Wei X, Sun C, Zhang R, Yun Q, Crabbe MJC, Van de Peer Y, Dong W

(2022/07) - Journal of integrative plant biology

DOI
2004. Engineering Curcumin Biosynthesis in Poplar Affects Lignification and Biomass Yield.

De Meester B, Oyarce P, Vanholme R, Van Acker R, Tsuji Y, Vangeel T, Van den Bosch S, Van Doorsselaere J, Sels B, Ralph J, Boerjan W

(2022/07) - Frontiers in plant science

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2003. Overexpression of the scopoletin biosynthetic pathway enhances lignocellulosic biomass processing.

Hoengenaert L, Wouters M, Kim H, De Meester B, Morreel K, Vandersyppe S, Pollier J, Desmet S, Goeminne G, Ralph J, Boerjan W, Vanholme R

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2002. KIL1 terminates fertility in maize by controlling silk senescence.

Mária Šimášková, Anna Daneva, Nicolas Max Doll, Neeltje Schilling, Cubr A-Rad O M, Liangzi Zhou, Freya De Winter, Stijn Aesaert, Riet De Rycke, Laurens Pauwels, Thomas Dresselhaus, Norbert Brugière, Carl Simmons, Jeffrey Habben, Moritz Nowack, Norbert BOLLIER

(2022/07) - The Plant Cell

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2001. Correction to: Establishment of Proximity-Dependent Biotinylation Approaches in Different Plant Model Systems.

Arora D, Abel NB, Liu C, Van Damme P, Yperman K, Eeckhout D, Vu LD, Wang J, Tornkvist A, Impens F, Korbei B, Van Leene J, Goossens A, De Jaeger G, Van Damme D

(2022/07) - The Plant cell

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2000. Regulation of jasmonate signaling by reversible acetylation of TOPLESS in Arabidopsis.

An C, Deng L, Zhai H, You Y, Wu F, Zhai Q, Goossens A, Li C

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1999. Modeling reveals posttranscriptional regulation of GA metabolism enzymes in response to drought and cold.

Band LR, Nelissen H, Preston SP, Rymen B, Prinsen E, AbdElgawad H, Beemster GTS

(2022/07) - Proceedings of the National Academy of Sciences of the United States of America

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1998. CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice

Mathieu Gonin, Kwanho Jeong, Yoan Coudert, Jeremy Lavarenne, Giang Thi Hoang, Martine Bes, Huong Thi Mai To, Marie‐Rose Ndella Thiaw, Toan Van Do, Daniel Moukouanga, Soazig Guyomarc'h, Kevin Bellande, Jean‐Rémy Brossier, Boris Parizot, Hieu Trang Nguyen, Tom Beeckman, Véronique Bergougnoux, Jacques Rouster, Christophe Sallaud, Laurent Laplaze, Antony Champion, Pascal Gantet

(2022/07) - The Plant Journal

DOI
1997. The Combined Effect of Heat and Osmotic Stress on Suberization of Arabidopsis Roots

Ana Rita Leal, Joana Belo, Tom Beeckman, Pedro M. Barros, M. Margarida Oliveira

(2022/07) - Cells

DOI
1996. ABA represses TOR and root meristem activity through nuclear exit of the SnRK1 kinase

Borja Belda-Palazón, Mónica Costa, Tom Beeckman, Filip Rolland, Elena Baena-González

(2022/07) - Proceedings of the National Academy of Sciences

DOI
1995. Simple and Efficient Modification of Golden Gate Design Standards and Parts Using Oligo Stitching

Jonas De Saeger, Mattias Vermeersch, Christophe Gaillochet, Thomas B. Jacobs

(2022/06) - ACS Synthetic Biology

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1994. SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode

Inês Modesto, Vera Inácio, Polina Novikova, Isabel Carrasquinho, Yves Van de Peer, Célia M. Miguel

(2022/06) - Forests

DOI
1993. A functionally conserved STORR gene fusion in Papaver species that diverged 16.8 million years ago.

Catania T, Li Y, Winzer T, Harvey D, Meade F, Caridi A, Leech A, Larson TR, Ning Z, Chang J, Van de Peer Y, Graham IA

(2022/06) - Nature communications

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1992. Proteolytic Activation of Plant Membrane-Bound Transcription Factors.

De Backer J, Van Breusegem F, De Clercq I

(2022/06) - Frontiers in plant science

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1991. Flexible and digestible wood caused by viral-induced alteration of cell wall composition.

Allen H, Zeef L, Morreel K, Goeminne G, Kumar M, Gomez LD, Dean AP, Eckmann A, Casiraghi C, McQueen-Mason SJ, Boerjan W, Turner SR

(2022/06) - Current biology : CB

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1990. TALE-induced cell death executors: an origin outside immunity?

Moritz K. Nowack, Danalyn R. Holmes, Thomas Lahaye

(2022/06) - Trends in Plant Science

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1989. Proteolytic Activation of Plant Membrane-Bound Transcription Factors.

De Backer J, Van Breusegem F, De Clercq I

(2022/06) - Frontiers in plant science

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1988. Jasmonate: A hormone of primary importance for plant metabolism

Trang Hieu Nguyen, Alain Goossens, Elia Lacchini

(2022/06) - Current Opinion in Plant Biology

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1987. Constitutive Active CPK30 Interferes With Root Growth and Endomembrane Trafficking in Arabidopsis thaliana.

Wang R, Himschoot E, Chen J, Boudsocq M, Geelen D, Friml J, Beeckman T, Vanneste S

(2022/06) - Frontiers in plant science

DOI
1986. Spatiotemporal development of suberized barriers in cork oak taproots

Ana Rita Leal, Helena Sapeta, Tom Beeckman, Pedro M Barros, M Margarida Oliveira, Rakefet David-Schwartz

(2022/06) - Tree Physiology

DOI
1985. The genome of Corydalis reveals the evolution of benzylisoquinoline alkaloid biosynthesis in Ranunculales.

Xu Z, Li Z, Ren F, Gao R, Wang Z, Zhang J, Zhao T, Ma X, Pu X, Xin T, Rombauts S, Sun W, Van de Peer Y, Chen S, Song J

(2022/05) - The Plant journal : for cell and molecular biology

DOI
1984. Cell-wall damage activates DOF transcription factors to promote wound healing and tissue regeneration in Arabidopsis thaliana

Ai Zhang, Keita Matsuoka, Abdul Kareem, Madalen Robert, Pawel Roszak, Bernhard Blob, Anchal Bisht, Lieven De Veylder, Cătălin Voiniciuc, Masashi Asahina, Charles W. Melnyk

(2022/05) - Current Biology

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1983. Masks Start to Drop: Suppressor of MAX2 1-Like Proteins Reveal Their Many Faces.

Temmerman A, Guillory A, Bonhomme S, Goormachtig S, Struk S

(2022/05) - Frontiers in Plant Science

DOI
1982. Autophagy promotes programmed cell death and corpse clearance in specific cell types of the Arabidopsis root cap

Qiangnan Feng, Riet De Rycke, Yasin Dagdas, Moritz K. Nowack

(2022/05) - Current Biology

DOI
1981. Self-incompatibility requires GPI anchor remodeling by the poppy PGAP1 ortholog HLD1

Zongcheng Lin, Fei Xie, Marina Triviño, Tao Zhao, Frederik Coppens, Lieven Sterck, Maurice Bosch, Vernonica E. Franklin-Tong, Moritz K. Nowack

(2022/05) - Current Biology

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1980. Proteomic characterization of isolated Arabidopsis clathrin-coated vesicles reveals evolutionarily conserved and plant-specific components

Dana A Dahhan, Gregory D Reynolds, Jessica J Cárdenas, Dominique Eeckhout, Alexander Johnson, Klaas Yperman, Walter A Kaufmann, Nou Vang, Xu Yan, Inhwan Hwang, Antje Heese, Geert De Jaeger, Jiří Friml, Daniël Van Damme, Jianwei Pan, Sebastian Y Bednarek

(2022/05) - The Plant Cell

DOI
1979. Touch signaling and thigmomorphogenesis are regulated by complementary CAMTA3- and JA-dependent pathways

Essam Darwish, Ritesh Ghosh, Abraham Ontiveros-Cisneros, Huy Cuong Tran, Marcus Petersson, Liesbeth De Milde, Martyna Broda, Alain Goossens, Alex Van Moerkercke, Kasim Khan, Olivier Van Aken

(2022/05) - Science Advances

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1978. BREEDIT: A novel multiplex genome editing strategy to improve complex quantitative traits in maize (Zea mays L.)

Lorenzo CD, Debray K, Herwegh D, Develtere W, Impens L, Schaumont D, Vandeputte W, Aesaert S, Coussens G, de Boe Y, Demuynck K, Van Hautegem T, Inzé D

(2022/05) -

DOI
1977. Optimized Transformation and Gene Editing of the B104 Public Maize Inbred by Improved Tissue Culture and Use of Morphogenic Regulators

Stijn Aesaert, Lennert Impens, Griet Coussens, Els Van Lerberge, Rudy Vanderhaeghen, Laurence Desmet, Yasmine Vanhevel, Shari Bossuyt, Angeline Ndele Wambua, Mieke Van Lijsebettens, Dirk Inzé, Ellen De Keyser, Thomas B. Jacobs, Mansour Karimi, Laurens Pauwels

(2022/04) - Frontiers in Plant Science

DOI
1976. Genomes shed light on the evolution of Begonia, a mega‐diverse genus

Lingfei Li, Xiaoli Chen, Dongming Fang, Shanshan Dong, Xing Guo, Na Li, Lucia Campos‐Dominguez, Wenguang Wang, Yang Liu, Xiaoan Lang, Yang Peng, Daike Tian, Daniel C. Thomas, Weixue Mu, Min Liu, Chenyu Wu, Ting Yang, Suzhou Zhang, Leilei Yang, Jianfen Yang, Zhong‐Jian Liu, Liangsheng Zhang, Xingtan Zhang, Fei Chen, Yuannian Jiao, Yalong Guo, Mark Hughes, Wei Wang, Xiaofei Liu, Chunmei Zhong, Airong Li, Sunil Kumar Sahu, Huanming Yang, Ernest Wu, Joel Sharbrough, Michael Lisby, Xin Liu, Xun Xu, Douglas E. Soltis, Yves Van de Peer, Catherine Kidner, Shouzhou Zhang, Huan Liu

(2022/04) - New Phytologist

DOI
1975. Genomes of leafy and leafless Platanthera orchids illuminate the evolution of mycoheterotrophy

Ming-He Li, Ke-Wei Liu, Zhen Li, Hsiang-Chia Lu, Qin-Liang Ye, Diyang Zhang, Jie-Yu Wang, Yu-Feng Li, Zhi-Ming Zhong, Xuedie Liu, Xia Yu, Ding-Kun Liu, Xiong-De Tu, Bin Liu, Yang Hao, Xing-Yu Liao, Yu-Ting Jiang, Wei-Hong Sun, Jinliao Chen, Yan-Qiong Chen, Ye Ai, Jun-Wen Zhai, Sha-Sha Wu, Zhuang Zhou, Yu-Yun Hsiao, Wan-Lin Wu, You-Yi Chen, Yu-Fu Lin, Jui-Ling Hsu, Chia-Ying Li, Zhi-Wen Wang, Xiang Zhao, Wen-Ying Zhong, Xiao-Kai Ma, Liang Ma, Jie Huang, Gui-Zhen Chen, Ming-Zhong Huang, Laiqiang Huang, Dong-Hui Peng, Yi-Bo Luo, Shuang-Quan Zou, Shi-Pin Chen, Siren Lan, Wen-Chieh Tsai, Yves Van de Peer, Zhong-Jian Liu

(2022/04) - Nature Plants

DOI
1974. The Cycas genome and the early evolution of seed plants

Yang Liu, Sibo Wang, Linzhou Li, Ting Yang, Shanshan Dong, Tong Wei, Shengdan Wu, Yongbo Liu, Yiqing Gong, Xiuyan Feng, Jianchao Ma, Guanxiao Chang, Jinling Huang, Yong Yang, Hongli Wang, Min Liu, Yan Xu, Hongping Liang, Jin Yu, Yuqing Cai, Zhaowu Zhang, Yannan Fan, Weixue Mu, Sunil Kumar Sahu, Shuchun Liu, Xiaoan Lang, Leilei Yang, Na Li, Sadaf Habib, Yongqiong Yang, Anders J. Lindstrom, Pei Liang, Bernard Goffinet, Sumaira Zaman, Jill L. Wegrzyn, Dexiang Li, Jian Liu, Jie Cui, Eva C. Sonnenschein, Xiaobo Wang, Jue Ruan, Jia-Yu Xue, Zhu-Qing Shao, Chi Song, Guangyi Fan, Zhen Li, Liangsheng Zhang, Jianquan Liu, Zhong-Jian Liu, Yuannian Jiao, Xiao-Quan Wang

(2022/04) - Nature Plants

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1973. Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax

Zhen-Hui Wang, Xin-Feng Wang, Tianyuan Lu, Ming-Rui Li, Peng Jiang, Jing Zhao, Si-Tong Liu, Xue-Qi Fu, Jonathan F. Wendel, Yves Van de Peer, Bao Liu, Lin-Feng Li

(2022/04) - Nature Communications

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1972. The Plant Anaphase-Promoting Complex/Cyclosome.

Willems A, De Veylder L

(2022/04) - Annual review of cell and developmental biology

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1971. Stenotrophomonas sp. SRS1 promotes growth of Arabidopsis and tomato plants under salt stress conditions

Ho Manh Tuong, Sonia Garcia Mendez, Michiel Vandecasteele, Anne Willems, Dexian Luo, Stien Beirinckx, Sofie Goormachtig

(2022/04) - Plant and Soil

DOI
1970. Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots

Ren Wang, Ellie Himschoot, Matteo Grenzi, Jian Chen, Alaeddine Safi, Melanie Krebs, Karin Schumacher, Moritz K Nowack, Wolfgang Moeder, Keiko Yoshioka, Daniël Van Damme, Ive De Smet, Danny Geelen, Tom Beeckman, Jiří Friml, Alex Costa, Steffen Vanneste, Richard Napier

(2022/04) - Journal of Experimental Botany

DOI
1969. Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots.

Wang R, Himschoot E, Grenzi M, Chen J, Safi A, Krebs M, Schumacher K, Nowack MK, Moeder W, Yoshioka K, Van Damme D, De Smet I, Geelen D, Beeckman T, Vanneste S

(2022/04) - Journal of experimental botany

DOI
1968. Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots.

Wang R, Himschoot E, Grenzi M, Chen J, Safi A, Krebs M, Schumacher K, Nowack MK, Moeder W, Yoshioka K, Van Damme D, De Smet I, Geelen D, Beeckman T, Vanneste S

(2022/04) - Journal of experimental botany

DOI
1967. Modulation of the DA1 pathway in maize shows that translatability of information from Arabidopsis to crops is complex.

Gong P, Demuynck K, De Block J, Aesaert S, Coussens G, Pauwels L, Inzé D, Nelissen H

(2022/04) - Plant science : an international journal of experimental plant biology

DOI
1966. Auxin analog-induced Ca2+ signaling is independent of inhibition of endosomal aggregation in Arabidopsis roots.

Wang R, Himschoot E, Grenzi M, Chen J, Safi A, Krebs M, Schumacher K, Nowack MK, Moeder W, Yoshioka K, Van Damme D, De Smet I, Geelen D, Beeckman T, Vanneste S

(2022/04) - Journal of experimental botany

DOI
1965. The genome of hibiscus hamabo reveals its adaptation to saline and waterlogged habitat.

Wang Z, Xue JY, Hu SY, Zhang F, Yu R, Chen D, Van de Peer Y, Jiang J, Song A, Ni L, Hua J, Lu Z, Yu C, Yin Y, Gu C

(2022/03) - Horticulture research

DOI
1964. MicroRNA-mediated post-transcriptional regulation of Pinus pinaster response and resistance to pinewood nematode.

Modesto I, Inácio V, Van de Peer Y, Miguel CM

(2022/03) - Scientific reports

DOI
1963. A common F-box gene regulates the leucine homeostasis of Medicago truncatula and Arabidopsis thaliana

Anelia Iantcheva, Miroslava Zhiponova, Miglena Revalska, Jefri Heyman, Ivayla Dincheva, Ilian Badjakov, Nathan De Geyter, Irina Boycheva, Sofie Goormachtig, Lieven De Veylder

(2022/03) - Protoplasma

DOI
1962. A long and stressful day: Photoperiod shapes aluminium tolerance in plants.

Siqueira JA, Wakin T, Batista-Silva W, Silva JCF, Vicente MH, Silva JC, Clarindo WR, Zsögön A, Peres LEP, De Veylder L, Fernie AR, Nunes-Nesi A, Araújo WL

(2022/03) - Journal of hazardous materials

DOI
1961. Rerouting of the lignin biosynthetic pathway by inhibition of cytosolic shikimate recycling in transgenic hybrid aspen.

Hu S, Kamimura N, Sakamoto S, Nagano S, Takata N, Liu S, Goeminne G, Vanholme R, Uesugi M, Yamamoto M, Hishiyama S, Kim H, Boerjan W, Ralph J, Kajita S

(2022/03) - The Plant journal : for cell and molecular biology

DOI
1960. Spatial Regression Models for Field Trials: A Comparative Study and New Ideas

Stijn Hawinkel, Sam De Meyer, Steven Maere

(2022/03) - Frontiers in Plant Science

DOI
1959. A common F-box gene regulates the leucine homeostasis of Medicago truncatula and Arabidopsis thaliana

Anelia Iantcheva, Miroslava Zhiponova, Miglena Revalska, Jefri Heyman, Ivayla Dincheva, Ilian Badjakov, Nathan De Geyter, Irina Boycheva, Sofie Goormachtig, Lieven De Veylder

(2022/03) - Protoplasma

DOI
1958. Field-grown soybean shows genotypic variation in physiological and seed composition responses to heat stress during seed development

Anna C. Ortiz, Ive De Smet, Rosangela Sozzani, Anna M. Locke

(2022/03) - Environmental and Experimental Botany

DOI
1957. Proteome-wide cellular thermal shift assay reveals unexpected cross-talk between brassinosteroid and auxin signaling.

Lu Q, Zhang Y, Hellner J, Giannini C, Xu X, Pauwels J, Ma Q, Dejonghe W, Han H, Van de Cotte B, Impens F, Gevaert K, De Smet I, Friml J, Molina DM, Russinova E

(2022/03) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1956. Modulation of the DA1 pathway in maize shows that translatability of information from Arabidopsis to crops is complex

Gong P, Demuynck K, De Block J, Aesaert S, Coussens G, Pauwels L, Inzé D, Nelissen H

(2022/03) -

DOI
1955. Auxin’s origin: do PILS hold the key?

Kenny Arthur Bogaert, Jonas Blomme, Tom Beeckman, Olivier De Clerck

(2022/03) - Trends in Plant Science

DOI
1954. Mini-Review: Transgenerational CRISPR/Cas9 Gene Editing in Plants

Lennert Impens, Thomas B. Jacobs, Hilde Nelissen, Dirk Inzé, Laurens Pauwels

(2022/02) - Frontiers in Genome Editing

DOI
1953. ROPGAP-dependent interaction between brassinosteroid and ROP2-GTPase signaling controls pavement cell shape in Arabidopsis

Cheng Zhang, Theresa Lauster, Wenxin Tang, Anaxi Houbaert, Shanshuo Zhu, Dominique Eeckhout, Ive De Smet, Geert De Jaeger, Thomas B. Jacobs, Tongda Xu, Sabine Müller, Eugenia Russinova

(2022/02) - Current Biology

DOI
1952. Conditional and tissue-specific approaches to dissect essential mechanisms in plant development

Marie L. Pfeiffer, Joanna Winkler, Daniël Van Damme, Thomas B. Jacobs, Moritz K. Nowack

(2022/02) - Current Opinion in Plant Biology

DOI
1951. Advancing root developmental research through single-cell technologies

Max Minne, Yuji Ke, Maite Saura-Sanchez, Bert De Rybel

(2022/02) - Current Opinion in Plant Biology

DOI
1950. Application of second-generation sequencing (SGS) and third generation sequencing (TGS) in aquaculture breeding program

Li Lian Wong, Siti Aisyah Razali, Zulaikha Mat Deris, Muhd Danish-Daniel, Min Pau Tan, Siti Azizah Mohd Nor, Hongyu Ma, Wang Min, Liang Yantao, Md Asaduzzaman, Yeong Yik Sung, Zhanjiang Liu, Patrick Sorgeloos, Yves Van de Peer, Nor Afiqah-Aleng

(2022/02) - Aquaculture

DOI
1949. Divergence of active site motifs among different classes of Populus glutaredoxins results in substrate switches.

Xu H, Li Z, Jiang PF, Zhao L, Qu C, Van de Peer Y, Liu YJ, Zeng QY

(2022/02) - The Plant journal : for cell and molecular biology

DOI
1948. Cell cycle checkpoint control in response to DNA damage by environmental stresses

José Antonio Pedroza‐Garcia, Yanli Xiang, Lieven De Veylder

(2022/02) - The Plant Journal

DOI
1947. Single-cell transcriptomics sheds light on the identity and metabolism of developing leaf cells

Rubén Tenorio Berrío, Kevin Verstaen, Niels Vandamme, Julie Pevernagie, Ignacio Achon, Julie Van Duyse, Gert Van Isterdael, Yvan Saeys, Lieven De Veylder, Dirk Inzé, Marieke Dubois

(2022/02) - Plant Physiology

DOI
1946. Flemish soils contain rhizobia partners for Northwestern Europe-adapted soybean cultivars.

Van Dingenen J, Garcia Mendez S, Beirinckx S, Vlaminck L, De Keyser A, Stuer N, Verschaete S, Clarysse A, Pannecoucque J, Rombauts S, Roldan-Ruiz I, Willems A, Goormachtig S

(2022/02) - Environmental microbiology

DOI
1945. Plant development meets climate emergency – it's time to plant an apple tree

Keiko Sugimoto, Moritz K. Nowack

(2022/02) - Current Opinion in Plant Biology

DOI
1944. Conditional and tissue-specific approaches to dissect essential mechanisms in plant development

Marie L. Pfeiffer, Joanna Winkler, Daniël Van Damme, Thomas B. Jacobs, Moritz K. Nowack

(2022/02) - Current Opinion in Plant Biology

DOI
1943. ROPGAP-dependent interaction between brassinosteroid and ROP2-GTPase signaling controls pavement cell shape in Arabidopsis

Cheng Zhang, Theresa Lauster, Wenxin Tang, Anaxi Houbaert, Shanshuo Zhu, Dominique Eeckhout, Ive De Smet, Geert De Jaeger, Thomas B. Jacobs, Tongda Xu, Sabine Müller, Eugenia Russinova

(2022/02) - Current Biology

DOI
1942. Within and beyond organelle engineering: strategies for increased terpene production in yeasts and plants

Ana Cristina Jaramillo-Madrid, Elia Lacchini, Alain Goossens

(2022/02) - Current Opinion in Green and Sustainable Chemistry

DOI
1941. Overview of Witloof Chicory (Cichorium intybus L.) Discolorations and Their Underlying Physiological and Biochemical Causes.

De Jaegere I, Cornelis Y, De Clercq T, Goossens A, Van de Poel B

(2022/02) - Frontiers in plant science

DOI
1940. An in situ sequencing approach maps PLASTOCHRON1 at the boundary between indeterminate and determinate cells.

Laureyns R, Joossens J, Herwegh D, Pevernagie J, Pavie B, Demuynck K, Debray K, Coussens G, Pauwels L, Van Hautegem T, Bontinck M, Strable J, Nelissen H

(2022/02) - Plant physiology

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1939. Mini-Review: Transgenerational CRISPR/Cas9 Gene Editing in Plants.

Impens L, Jacobs TB, Nelissen H, Inzé D, Pauwels L

(2022/02) - Frontiers in genome editing

DOI
1938. Translational profile of developing phellem cells in Arabidopsis thaliana roots.

Leal AR, Barros PM, Parizot B, Sapeta H, Vangheluwe N, Andersen TG, Beeckman T, Oliveira MM

(2022/02) - The Plant journal : for cell and molecular biology

DOI
1937. Two phylogenetically unrelated peptide‐receptor modules jointly regulate lateral root initiation via a partially shared signaling pathway in Arabidopsis thaliana

Joris Jourquin, Ana Ibis Fernandez, Boris Parizot, Ke Xu, Wim Grunewald, Akihito Mamiya, Hidehiro Fukaki, Tom Beeckman

(2022/02) - New Phytologist

DOI
1936. Mutually opposing activity of PIN7 splicing isoforms is required for auxin‐mediated tropic responses in Arabidopsis thaliana

Ivan Kashkan, Mónika Hrtyan, Katarzyna Retzer, Jana Humpolíčková, Aswathy Jayasree, Roberta Filepová, Zuzana Vondráková, Sibu Simon, Debbie Rombaut, Thomas B. Jacobs, Mikko J. Frilander, Jan Hejátko, Jiří Friml, Jan Petrášek, Kamil Růžička

(2022/01) - New Phytologist

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1935. Means to Quantify Vascular Cell File Numbers in Different Tissues.

Arents HE, Eswaran G, Glanc M, Mähönen AP, De Rybel B

(2022/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1934. The Neighborhood of the Spike Gene Is a Hotspot for Modular Intertypic Homologous and Nonhomologous Recombination in Coronavirus Genomes.

Nikolaidis M, Markoulatos P, Van de Peer Y, Oliver SG, Amoutzias GD

(2022/01) - Molecular biology and evolution

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1933. Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum.

Deneweth J, Van de Peer Y, Vermeirssen V

(2022/01) - BMC genomics

DOI
1932. Genomic and Metabolomic Analyses of the Marine Fungus Emericellopsis cladophorae: Insights into Saltwater Adaptability Mechanisms and Its Biosynthetic Potential

Micael F. M. Gonçalves, Sandra Hilário, Yves Van de Peer, Ana C. Esteves, Artur Alves

(2022/01) - Journal of Fungi

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1931. Chemical Perturbation of Chloroplast Ca²⁺ Dynamics in Arabidopsis thaliana Suspension Cell Cultures and Seedlings.

Yao P, Vanneste S, Navazio L, Van Breusegem F, Stael S

(2022/01) - Methods in molecular biology (Clifton, N.J.)

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1930. Detection of Damage-Activated Metacaspase Activity by Western Blot in Plants.

Stael S, Miller LP, Fernández-Fernández ÁD, Van Breusegem F

(2022/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1929. Measurement of NAD(P)H and NADPH-Generating Enzymes.

Mhamdi A, Van Breusegem F, Noctor G

(2022/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1928. Characterization of RBPome in Oxidative Stress Conditions.

Zhang Z, Timmerman E, Impens F, Van Breusegem F

(2022/01) - Methods in molecular biology (Clifton, N.J.)

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1927. To New Beginnings: Riboproteogenomics Discovery of N-Terminal Proteoforms in Arabidopsis Thaliana.

Willems P, Ndah E, Jonckheere V, Van Breusegem F, Van Damme P

(2022/01) - Frontiers in plant science

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1926. Dissecting the Role of SAL1 in Metabolizing the Stress Signaling Molecule 3'-Phosphoadenosine 5'-Phosphate in Different Cell Compartments.

Ashykhmina N, Chan KX, Frerigmann H, Van Breusegem F, Kopriva S, Flügge UI, Gigolashvili T

(2022/01) - Frontiers in molecular biosciences

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1925. Improving oxidative stress resilience in plants

Pavel I. Kerchev, Frank Van Breusegem

(2022/01) - The Plant Journal

DOI
1924. ksrates: positioning whole-genome duplications relative to speciation events in KS distributions

Cecilia Sensalari, Steven Maere, Rolf Lohaus, Peter Robinson

(2022/01) - Bioinformatics

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1923. Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators that Link rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.

Struk S, Braem L, Matthys C, Walton A, Vangheluwe N, Van Praet S, Jiang L, Baster P, De Cuyper C, Boyer FD, Stes E, Beeckman T, Friml J, Gevaert K, Goormachtig S

(2022/01) - Plant & cell physiology

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1922. Transient Gene Expression in Catharanthus roseus Flower Petals Using Agroinfiltration.

Colinas M, Goossens A

(2022/01) - Methods in molecular biology (Clifton, N.J.)

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1921. SlKIX8 and SlKIX9 are negative regulators of leaf and fruit growth in tomato

Gwen Swinnen, Jean-Philippe Mauxion, Alexandra Baekelandt, Rebecca De Clercq, Jan Van Doorsselaere, Dirk Inzé, Nathalie Gonzalez, Alain Goossens, Laurens Pauwels

(2022/01) - Plant Physiology

DOI
1920. SAMBA controls cell division rate during maize development.

Gong P, Bontinck M, Demuynck K, De Block J, Gevaert K, Eeckhout D, Persiau G, Aesaert S, Coussens G, Van Lijsebettens M, Pauwels L, De Jaeger G, Nelissen H

(2022/01) - Plant physiology

DOI
1919. Increasing yield on dry fields: molecular pathways with growing potential

Rubén Tenorio Berrío, Hilde Nelissen, Dirk Inzé, Marieke Dubois

(2022/01) - The Plant Journal

DOI
1918. Transcriptional Analysis in the Arabidopsis Roots Reveals New Regulators that Link rac-GR24 Treatment with Changes in Flavonol Accumulation, Root Hair Elongation and Lateral Root Density.

Struk S, Braem L, Matthys C, Walton A, Vangheluwe N, Van Praet S, Jiang L, Baster P, De Cuyper C, Boyer FD, Stes E, Beeckman T, Friml J, Gevaert K, Goormachtig S

(2022/01) - Plant & cell physiology

DOI
1917. The Phloem Intercalated With Xylem-Correlated 3 Receptor-Like Kinase Constitutively Interacts With Brassinosteroid Insensitive 1-Associated Receptor Kinase 1 and Is Involved in Vascular Development in Arabidopsis.

Xu K, Jourquin J, Njo MF, Nguyen L, Beeckman T, Fernandez AI

(2022/01) - Frontiers in plant science

DOI
1916. Genetic Variability of Arabidopsis thaliana Mature Root System Architecture and Genome-Wide Association Study.

Deja-Muylle A, Opdenacker D, Parizot B, Motte H, Lobet G, Storme V, Clauw P, Njo M, Beeckman T

(2022/01) - Frontiers in plant science

DOI
1915. Protoplast Preparation and Fluorescence-Activated Cell Sorting for the Evaluation of Targeted Mutagenesis in Plant Cells

Ward Decaestecker, Norbert Bollier, Rafael Andrade Buono, Moritz K. Nowack, Thomas B. Jacobs

(2022) - Methods in Molecular Biology

DOI
1914. Cellular Hallmarks and Regulation of the Diatom Cell Cycle

Petra Bulankova, Gust Bilcke, Wim Vyverman, Lieven De Veylder

(2022) - The Molecular Life of Diatoms

DOI
1913. Life Cycle Regulation

Gust Bilcke, Maria Immacolata Ferrante, Marina Montresor, Sam De Decker, Lieven De Veylder, Wim Vyverman

(2022) - The Molecular Life of Diatoms

DOI
1912. Protoplast Preparation and Fluorescence-Activated Cell Sorting for the Evaluation of Targeted Mutagenesis in Plant Cells

Ward Decaestecker, Norbert Bollier, Rafael Andrade Buono, Moritz K. Nowack, Thomas B. Jacobs

(2022) - Methods in Molecular Biology

DOI
1911. Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

Pawel Roszak, Jung-ok Heo, Bernhard Blob, Koichi Toyokura, Yuki Sugiyama, Maria Angels de Luis Balaguer, Winnie W. Y. Lau, Fiona Hamey, Jacopo Cirrone, Ewelina Madej, Alida M. Bouatta, Xin Wang, Marjorie Guichard, Robertas Ursache, Hugo Tavares, Kevin Verstaen, Jos Wendrich, Charles W. Melnyk, Yoshihisa Oda, Dennis Shasha, Sebastian E. Ahnert, Yvan Saeys, Bert De Rybel, Renze Heidstra, Ben Scheres, Guido Grossmann, Ari Pekka Mähönen, Philipp Denninger, Berthold Göttgens, Rosangela Sozzani, Kenneth D. Birnbaum, Yrjö Helariutta

(2021/12) - Science

DOI
1910. Haplotype-resolved genome assembly and allele-specific gene expression in cultivated ginger

Shi-Ping Cheng, Kai-Hua Jia, Hui Liu, Ren-Gang Zhang, Zhi-Chao Li, Shan-Shan Zhou, Tian-Le Shi, Ai-Chu Ma, Cong-Wen Yu, Chan Gao, Guang-Lei Cao, Wei Zhao, Shuai Nie, Jing-Fang Guo, Si-Qian Jiao, Xue-Chan Tian, Xue-Mei Yan, Yu-Tao Bao, Quan-Zheng Yun, Xin-Zhu Wang, Ilga Porth, Yousry A El-Kassaby, Xiao-Ru Wang, Zhen Li, Yves Van de Peer, Jian-Feng Mao

(2021/12) - Horticulture Research

DOI
1909. The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments

Stephanie De Vos, Stephane Rombauts, Louis Coussement, Wannes Dermauw, Marnik Vuylsteke, Patrick Sorgeloos, James S. Clegg, Ziro Nambu, Filip Van Nieuwerburgh, Parisa Norouzitallab, Thomas Van Leeuwen, Tim De Meyer, Gilbert Van Stappen, Yves Van de Peer, Peter Bossier

(2021/12) - BMC Genomics

DOI
1908. Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome

Kai-Hua Jia, Hui Liu, Ren-Gang Zhang, Jie Xu, Shan-Shan Zhou, Si-Qian Jiao, Xue-Mei Yan, Xue-Chan Tian, Tian-Le Shi, Hang Luo, Zhi-Chao Li, Yu-Tao Bao, Shuai Nie, Jing-Fang Guo, Ilga Porth, Yousry A. El-Kassaby, Xiao-Ru Wang, Charles Chen, Yves Van de Peer, Wei Zhao, Jian-Feng Mao

(2021/12) - Horticulture Research

DOI
1907. The Euscaphis japonica genome and the evolution of malvids

Wei‐Hong Sun, Zhen Li, Shuang Xiang, Lin Ni, Diyang Zhang, De‐Qiang Chen, Meng‐Yuan Qiu, Qi‐Gong Zhang, Lin Xiao, Le Din, Yifan Li, Xing‐Yu Liao, Xue‐Die Liu, Yu‐Ting Jiang, Pei‐Lan Zhang, Hui Ni, Yifan Wang, Yi‐Xun Yue, Xi Wu, Xiang‐Qing Din, Wei Huang, Zhi‐Wen Wang, Xiaokai Ma, Bobin Liu, Xiao‐Xing Zou, Yves Van de Peer, Zhong‐Jian Liu, Shuang‐Quan Zou

(2021/12) - The Plant Journal

DOI
1906. The Cymbidium genome reveals the evolution of unique morphological traits

Ye Ai, Zhen Li, Wei-Hong Sun, Juan Chen, Diyang Zhang, Liang Ma, Qing-Hua Zhang, Ming-Kun Chen, Qing-Dong Zheng, Jiang-Feng Liu, Yu-Ting Jiang, Bai-Jun Li, Xuedie Liu, Xin-Yu Xu, Xia Yu, Yu Zheng, Xing-Yu Liao, Zhuang Zhou, Jie-Yu Wang, Zhi-Wen Wang, Tai-Xiang Xie, Shan-Hu Ma, Jie Zhou, Yu-Jie Ke, Yu-Zhen Zhou, Hsiang-Chia Lu, Ke-Wei Liu, Feng-Xi Yang, Gen-Fa Zhu, Laiqiang Huang, Dong-Hui Peng, Shi-Pin Chen, Siren Lan, Yves Van de Peer, Zhong-Jian Liu

(2021/12) - Horticulture Research

DOI
1905. Genome and Metabolome MS-Based Mining of a Marine Strain of Aspergillus affinis

Micael F. M. Gonçalves, Sandra Hilário, Marta Tacão, Yves Van de Peer, Artur Alves, Ana C. Esteves

(2021/12) - Journal of Fungi

DOI
1904. Evolution of NLR Resistance Genes in Magnoliids: Dramatic Expansions of CNLs and Multiple Losses of TNLs.

Wu JY, Xue JY, Van de Peer Y

(2021/12) - Frontiers in plant science

DOI
1903. Hydroxycinnamic acid-modified xylan side chains and their cross-linking products in rice cell walls are reduced in the Xylosyl arabinosyl substitution of xylan 1 mutant.

Feijao C, Morreel K, Anders N, Tryfona T, Busse-Wicher M, Kotake T, Boerjan W, Dupree P

(2021/12) - The Plant journal : for cell and molecular biology

DOI
1902. The TPLATE complex mediates membrane bending during plant clathrin-mediated endocytosis.

Johnson A, Dahhan DA, Gnyliukh N, Kaufmann WA, Zheden V, Costanzo T, Mahou P, Hrtyan M, Wang J, Aguilera-Servin J, van Damme D, Beaurepaire E, Friml J

(2021/12) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1901. Stress granule-associated TaMBF1c confers thermotolerance through regulating specific mRNA translation in wheat (Triticum aestivum).

Tian X, Qin Z, Zhao Y, Wen J, Lan T, Zhang L, Wang F, Qin D, Yu K, Zhao A, Hu Z, Yao Y, Ni Z, Sun Q, De Smet I, Peng H, Xin M

(2021/12) - The New phytologist

DOI
1900. Non-cell autonomous and spatiotemporal signalling from a tissue organizer orchestrates root vascular development.

Yang B, Minne M, Brunoni F, Plačková L, Petřík I, Sun Y, Nolf J, Smet W, Verstaen K, Wendrich JR, Eekhout T, Hoyerová K, Van Isterdael G, De Rybel B

(2021/11) - Nature plants

DOI
1899. Genome‐wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation

Yong‐Peng Ma, Hafiz Muhammad Wariss, Rong‐Li Liao, Ren‐Gang Zhang, Quan‐Zheng Yun, Richard G. Olmstead, John H. Chau, Richard I. Milne, Yves Van de Peer, Wei‐Bang Sun

(2021/11) - New Phytologist

DOI
1898. Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.).

Qiao Q, Edger PP, Xue L, Qiong, Lu J, Zhang Y, Cao Q, Yocca AE, Platts AE, Knapp SJ, Van Montagu M, Van de Peer Y, Lei J, Zhang T

(2021/11) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1897. Drops join to make a stream: high-throughput nanoscale cultivation to grasp the lettuce root microbiome.

Persyn A, Mueller A, Goormachtig S

(2021/11) - Environmental microbiology reports

DOI
1896. The Collaboration Between Art History and Genetics - An Unlikely Marriage of Disciplines.

De Smet I, Vergauwen D

(2021/11) - Frontiers in plant science

DOI
1895. Lateral root formation and nutrients: nitrogen in the spotlight

Pierre-Mathieu Pélissier, Hans Motte, Tom Beeckman

(2021/11) - Plant Physiology

DOI
1894. CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2 modulates auxin homeostasis and signaling

Sonhita Chakraborty, Masatsugu Toyota, Wolfgang Moeder, Kimberley Chin, Alex Fortuna, Marc Champigny, Steffen Vanneste, Simon Gilroy, Tom Beeckman, Eiji Nambara, Keiko Yoshioka

(2021/11) - Plant Physiology

DOI
1893. Cell surface and intracellular auxin signalling for H⁺ fluxes in root growth.

Li L, Verstraeten I, Roosjen M, Takahashi K, Rodriguez L, Merrin J, Chen J, Shabala L, Smet W, Ren H, Vanneste S, Shabala S, De Rybel B, Weijers D, Friml J

(2021/10) - Nature

DOI
1892. Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production.

Song C, Fu F, Yang L, Niu Y, Tian Z, He X, Yang X, Chen J, Sun W, Wan T, Zhang H, Yang Y, Xiao T, Dossa K, Meng X, Cao F, Van de Peer Y, Wang G, Chen S

(2021/10) - Communications biology

DOI
1891. Three-dimensional quantitative analysis of the Arabidopsis quiescent centre.

Lu R, Canher B, Bisht A, Heyman J, De Veylder L

(2021/10) - Journal of experimental botany

DOI
1890. Improved chemical pulping and saccharification of a natural mulberry mutant deficient in cinnamyl alcohol dehydrogenase

Tsutomu Ikeda, Naoki Takata, Shingo Sakamoto, Shi Hu, Nuoendagula, Shojiro Hishiyama, Nobutaka Mitsuda, Wout Boerjan, John Ralph, Shinya Kajita

(2021/10) - Holzforschung

DOI
1889. Paenibacillus polymyxa, a Jack of all trades

Sarah Langendries, Sofie Goormachtig

(2021/10) - Environmental Microbiology

DOI
1888. Conditional and tissue-specific approaches to dissect essential mechanisms in plant development.

Pfeiffer ML, Winkler J, Van Damme D, Jacobs TB, Nowack MK

(2021/10) - Current opinion in plant biology

DOI
1887. An Independent Evolutionary Origin for Insect Deterrent Cucurbitacins in Iberis amara.

Dong L, Almeida A, Pollier J, Khakimov B, Bassard JE, Miettinen K, Stærk D, Mehran R, Olsen CE, Motawia MS, Goossens A, Bak S

(2021/10) - Molecular Biology and Evolution

DOI
1886. Identification of new growth regulators using cross-species network analysis in plants

Curci PL, Zhang J, Mähler N, Seyfferth C, Mannapperuma C, Diels T, Hautegem TV, Jonsen D, Street N, Hvidsten TR, Hertzberg M, Nilsson O, Inze D, Vandepoele K

(2021/10) -

DOI
1885. Plant signaling: Interplay of brassinosteroids and auxin in root meristems.

Xuan W, Beeckman T

(2021/10) - Current biology : CB

DOI
1884. A non-duplicated magnoliid genome.

Li Z, Van de Peer Y

(2021/09) - Nature plants

DOI
1883. Genomic Resources to Guide Improvement of the Shea Tree.

Hale I, Ma X, Melo ATO, Padi FK, Hendre PS, Kingan SB, Sullivan ST, Chen S, Boffa JM, Muchugi A, Danquah A, Barnor MT, Jamnadass R, Van de Peer Y, Van Deynze A

(2021/09) - Frontiers in plant science

DOI
1882. Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta.

Bilcke G, Van Craenenbroeck L, Castagna A, Osuna-Cruz CM, Vandepoele K, Sabbe K, De Veylder L, Vyverman W

(2021/09) - Scientific reports

DOI
1881. Behind the Scenes: The Impact of Bioactive Phenylpropanoids on the Growth Phenotypes of Arabidopsis Lignin Mutants.

El Houari I, Boerjan W, Vanholme B

(2021/09) - Frontiers in plant science

DOI
1880. A network of stress-related genes regulates hypocotyl elongation downstream of selective auxin perception

Adeline Rigal, Siamsa M. Doyle, Andrés Ritter, Sara Raggi, Thomas Vain, José Antonio O’Brien, Alain Goossens, Laurens Pauwels, Stéphanie Robert

(2021/09) - Plant Physiology

DOI
1879. Engineering Metabolism in Nicotiana Species: A Promising Future

Francisco Javier Molina-Hidalgo, Marta Vazquez-Vilar, Lucio D'Andrea, Olivia C. Demurtas, Paul Fraser, Giovanni Giuliano, Ralph Bock, Diego Orzáez, Alain Goossens

(2021/09) - Trends in Biotechnology

DOI
1878. Early "Rootprints" of Plant Terrestrialization: Selaginella Root Development Sheds Light on Root Evolution in Vascular Plants.

Fang T, Motte H, Parizot B, Beeckman T

(2021/09) - Frontiers in plant science

DOI
1877. A single-cell morpho-transcriptomic map of brassinosteroid action in the Arabidopsis root.

Graeff M, Rana S, Wendrich JR, Dorier J, Eekhout T, Aliaga Fandino AC, Guex N, Bassel GW, De Rybel B, Hardtke CS

(2021/08) - Molecular plant

DOI
1876. G2/M-checkpoint activation in fasciata1 rescues an aberrant S-phase checkpoint but causes genome instability

Thomas Eekhout, Martina Dvorackova, José Antonio Pedroza Garcia, Martina Nespor Dadejova, Pooneh Kalhorzadeh, Hilde Van den Daele, Ilse Vercauteren, Jiri Fajkus, Lieven De Veylder

(2021/08) - Plant Physiology

DOI
1875. Maize ATR safeguards genome stability during kernel development to prevent early endosperm endocycle onset and cell death.

Pedroza-Garcia JA, Eekhout T, Achon I, Nisa MU, Coussens G, Vercauteren I, Van den Daele H, Pauwels L, Van Lijsebettens M, Raynaud C, De Veylder L

(2021/08) - The Plant cell

DOI
1874. A Mutation in DNA Polymerase α Rescues WEE1^KO Sensitivity to HU.

Eekhout T, Pedroza-Garcia JA, Kalhorzadeh P, De Jaeger G, De Veylder L

(2021/08) - International journal of molecular sciences

DOI
1873. Reactive oxygen species and organellar signaling

Su Yin Phua, Barbara De Smet, Claire Remacle, Kai Xun Chan, Frank Van Breusegem, Luisa M Sandalio

(2021/08) - Journal of Experimental Botany

DOI
1872. Understanding plant responses to stress conditions: redox-based strategies.

Cejudo FJ, Sandalio LM, Van Breusegem F

(2021/08) - Journal of experimental botany

DOI
1871. CRISPR-Cas9 editing of CAFFEOYL SHIKIMATE ESTERASE 1 and 2 shows their importance and partial redundancy in lignification in Populus tremula × P. alba.

de Vries L, Brouckaert M, Chanoca A, Kim H, Regner MR, Timokhin VI, Sun Y, De Meester B, Van Doorsselaere J, Goeminne G, Chiang VL, Wang JP, Ralph J, Boerjan W

(2021/08) - Plant biotechnology journal

DOI
1870. Vessel- and ray-specific monolignol biosynthesis as an approach to engineer fiber-hypolignification and enhanced saccharification in poplar.

De Meester B, Vanholme R, de Vries L, Wouters M, Van Doorsselaere J, Boerjan W

(2021/08) - The Plant journal : for cell and molecular biology

DOI
1869. Synaptotagmins at the endoplasmic reticulum–plasma membrane contact sites maintain diacylglycerol homeostasis during abiotic stress

Noemi Ruiz-Lopez, Jessica Pérez-Sancho, Alicia Esteban del Valle, Richard P. Haslam, Steffen Vanneste, Rafael Catalá, Carlos Perea-Resa, Daniël Van Damme, Selene García-Hernández, Armando Albert, José Vallarino, Jinxing Lin, Jiří Friml, Alberto P. Macho, Julio Salinas, Abel Rosado, Johnathan A. Napier, Vitor Amorim-Silva, Miguel A. Botella

(2021/08) - The Plant Cell

DOI
1868. A Comprehensive Phylogenetic Analysis of the MAP4K Family in the Green Lineage.

Pan L, Fonseca De Lima CF, Vu LD, De Smet I

(2021/08) - Frontiers in plant science

DOI
1867. Warm temperature triggers JOX and ST2A-mediated jasmonate catabolism to promote plant growth

Tingting Zhu, Cornelia Herrfurth, Mingming Xin, Tatyana Savchenko, Ivo Feussner, Alain Goossens, Ive De Smet

(2021/08) - Nature Communications

DOI
1866. Warm temperature triggers JOX and ST2A-mediated jasmonate catabolism to promote plant growth

Tingting Zhu, Cornelia Herrfurth, Mingming Xin, Tatyana Savchenko, Ivo Feussner, Alain Goossens, Ive De Smet

(2021/08) - Nature Communications

DOI
1865. A forward genetics approach integrating genome‐wide association study and expression quantitative trait locus mapping to dissect leaf development in maize (Zea mays)

Mara Miculan, Hilde Nelissen, Manel Ben Hassen, Fabio Marroni, Dirk Inzé, Mario Enrico Pè, Matteo Dell’Acqua

(2021/08) - The Plant Journal

DOI
1864. A reflux-and-growth mechanism explains oscillatory patterning of lateral root branching sites.

van den Berg T, Yalamanchili K, de Gernier H, Santos Teixeira J, Beeckman T, Scheres B, Willemsen V, Ten Tusscher K

(2021/08) - Developmental cell

DOI
1863. A molecular toolkit for the green seaweed Ulva mutabilis

Jonas Blomme, Xiaojie Liu, Thomas B Jacobs, Olivier De Clerck

(2021/07) - Plant Physiology

DOI
1862. The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts

Tao Wan, Zhiming Liu, Ilia J. Leitch, Haiping Xin, Gillian Maggs-Kölling, Yanbing Gong, Zhen Li, Eugene Marais, Yiying Liao, Can Dai, Fan Liu, Qijia Wu, Chi Song, Yadong Zhou, Weichang Huang, Kai Jiang, Qi Wang, Yong Yang, Zhixiang Zhong, Ming Yang, Xue Yan, Guangwan Hu, Chen Hou, Yingjuan Su, Shixiu Feng, Ji Yang, Jijun Yan, Jinfang Chu, Fan Chen, Jinhua Ran, Xiaoquan Wang, Yves Van de Peer, Andrew R. Leitch, Qingfeng Wang

(2021/07) - Nature Communications

DOI
1861. Diurnal transcript profiling of the diatom Seminavis robusta reveals adaptations to a benthic lifestyle

Gust Bilcke, Cristina Maria Osuna‐Cruz, Marta Santana Silva, Nicole Poulsen, Sofie D’hondt, Petra Bulankova, Wim Vyverman, Lieven De Veylder, Klaas Vandepoele

(2021/07) - The Plant Journal

DOI
1860. The Arabidopsis mediator complex subunit 8 regulates oxidative stress responses

Huaming He, Jordi Denecker, Katrien Van Der Kelen, Patrick Willems, Robin Pottie, Su Yin Phua, Matthew A Hannah, Didier Vertommen, Frank Van Breusegem, Amna Mhamdi

(2021/07) - The Plant Cell

DOI
1859. Periodic root branching is influenced by light through an HY1-HY5-auxin pathway.

Duan X, Xu S, Xie Y, Li L, Qi W, Parizot B, Zhang Y, Chen T, Han Y, Van Breusegem F, Beeckman T, Shen W, Xuan W

(2021/07) - Current biology : CB

DOI
1858. Interactions between soil compositions and the wheat root microbiome under drought stress: From an in silico to in planta perspective.

Si J, Froussart E, Viaene T, Vázquez-Castellanos JF, Hamonts K, Tang L, Beirinckx S, De Keyser A, Deckers T, Amery F, Vandenabeele S, Raes J, Goormachtig S

(2021/07) - Computational and Structural Biotechnology Journal

DOI
1857. Local regulation of auxin transport in root-apex transition zone mediates aluminium-induced Arabidopsis root-growth inhibition.

Li C, Liu G, Geng X, He C, Quan T, Hayashi KI, De Smet I, Robert HS, Ding Z, Yang ZB

(2021/07) - The Plant journal : for cell and molecular biology

DOI
1856. Protein kinase and phosphatase control of plant temperature responses

Myrthe Praat, Ive De Smet, Martijn van Zanten, Steve Penfield

(2021/07) - Journal of Experimental Botany

DOI
1855. Multiple cellular compartments engagement in Nicotiana benthamiana-peanut stunt virus-satRNA interactions revealed by systems biology approach

Barbara Wrzesińska, Agnieszka Zmienko, Lam Dai Vu, Ive De Smet, Aleksandra Obrępalska-Stęplowska

(2021/07) - Plant Cell Reports

DOI
1854. The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators

Natalia Nikonorova, Evan Murphy, Cassio Flavio Fonseca de Lima, Shanshuo Zhu, Brigitte van de Cotte, Lam Dai Vu, Daria Balcerowicz, Lanxin Li, Xiangpei Kong, Gieljan De Rop, Tom Beeckman, Jiří Friml, Kris Vissenberg, Peter C. Morris, Zhaojun Ding, Ive De Smet

(2021/07) - Cells

DOI
1853. Root engineering in maize by increasing cytokinin degradation causes enhanced root growth and leaf mineral enrichment.

Ramireddy E, Nelissen H, Leuendorf JE, Van Lijsebettens M, Inzé D, Schmülling T

(2021/07) - Plant molecular biology

DOI
1852. The Arabidopsis Root Tip (Phospho)Proteomes at Growth-Promoting versus Growth-Repressing Conditions Reveal Novel Root Growth Regulators.

Nikonorova N, Murphy E, Fonseca de Lima CF, Zhu S, van de Cotte B, Vu LD, Balcerowicz D, Li L, Kong X, De Rop G, Beeckman T, Friml J, Vissenberg K, De Smet I

(2021/07) - Cells

DOI
1851. Periodic root branching is influenced by light through an HY1-HY5-auxin pathway.

Duan X, Xu S, Xie Y, Li L, Qi W, Parizot B, Zhang Y, Chen T, Han Y, Van Breusegem F, Beeckman T, Shen W, Xuan W

(2021/07) - Current biology : CB

DOI
1850. Nature and Nurture: Genotype-Dependent Differential Responses of Root Architecture to Agar and Soil Environments

Merijn Kerstens, Vera Hesen, Kavya Yalamanchili, Andrea Bimbo, Stephen Grigg, Davy Opdenacker, Tom Beeckman, Renze Heidstra, Viola Willemsen

(2021/07) - Genes

DOI
1849. Seedling developmental defects upon blocking CINNAMATE‐4‐HYDROXYLASE are caused by perturbations in auxin transport

Ilias El Houari, Caroline Van Beirs, Helena E. Arents, Huibin Han, Alexandra Chanoca, Davy Opdenacker, Jacob Pollier, Véronique Storme, Ward Steenackers, Mussa Quareshy, Richard Napier, Tom Beeckman, Jiří Friml, Bert De Rybel, Wout Boerjan, Bartel Vanholme

(2021/06) - New Phytologist

DOI
1848. Wolfberry genomes and the evolution of Lycium (Solanaceae)

You-Long Cao, Yan-long Li, Yun-Fang Fan, Zhen Li, Kouki Yoshida, Jie-Yu Wang, Xiao-Kai Ma, Ning Wang, Nobutaka Mitsuda, Toshihisa Kotake, Takeshi Ishimizu, Kun-Chan Tsai, Shan-Ce Niu, Diyang Zhang, Wei-Hong Sun, Qing Luo, Jian-Hua Zhao, Yue Yin, Bo Zhang, Jun-Yi Wang, Ken Qin, Wei An, Jun He, Guo-Li Dai, Ya-Jun Wang, Zhi-Gang Shi, En-Ning Jiao, Peng-Ju Wu, Xuedie Liu, Bin Liu, Xing-Yu Liao, Yu-Ting Jiang, Xia Yu, Yang Hao, Xin-Yu Xu, Shuang-Quan Zou, Ming-He Li, Yu-Yun Hsiao, Yu-Fu Lin, Chieh-Kai Liang, You-Yi Chen, Wan-Lin Wu, Hsiang-Chai Lu, Si-Ren Lan, Zhi-Wen Wang, Xiang Zhao, Wen-Ying Zhong, Chuan-Ming Yeh, Wen-Chieh Tsai, Yves Van de Peer, Zhong-Jian Liu

(2021/06) - Communications Biology

DOI
1847. Whole-genome microsynteny-based phylogeny of angiosperms

Tao Zhao, Arthur Zwaenepoel, Jia-Yu Xue, Shu-Min Kao, Zhen Li, M. Eric Schranz, Yves Van de Peer

(2021/06) - Nature Communications

DOI
1846. Divergence of a genomic island leads to the evolution of melanization in a halophyte root fungus.

Yuan Z, Druzhinina IS, Gibbons JG, Zhong Z, Van de Peer Y, Rodriguez RJ, Liu Z, Wang X, Wei H, Wu Q, Wang J, Shi G, Cai F, Peng L, Martin FM

(2021/06) - The ISME journal

DOI
1845. Insights Into the Mechanisms Implicated in Pinus pinaster Resistance to Pinewood Nematode.

Modesto I, Sterck L, Arbona V, Gómez-Cadenas A, Carrasquinho I, Van de Peer Y, Miguel CM

(2021/06) - Frontiers in plant science

DOI
1844. A chromosome-level Amaranthus cruentus genome assembly highlights gene family evolution and biosynthetic gene clusters that may underpin the nutritional value of this traditional crop.

Ma X, Vaistij FE, Li Y, Jansen van Rensburg WS, Harvey S, Bairu MW, Venter SL, Mavengahama S, Ning Z, Graham IA, Van Deynze A, Van de Peer Y, Denby KJ

(2021/06) - The Plant journal : for cell and molecular biology

DOI
1843. Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms.

Bulankova P, Sekulić M, Jallet D, Nef C, van Oosterhout C, Delmont TO, Vercauteren I, Osuna-Cruz CM, Vancaester E, Mock T, Sabbe K, Daboussi F, De Veylder L

(2021/06) - Current biology : CB

DOI
1842. Pars Pro Toto: Every Single Cell Matters.

Christiaens F, Canher B, Lanssens F, Bisht A, Stael S, De Veylder L, Heyman J

(2021/06) - Frontiers in plant science

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1841. Seedling developmental defects upon blocking CINNAMATE‐4‐HYDROXYLASE are caused by perturbations in auxin transport

Ilias El Houari, Caroline Van Beirs, Helena E. Arents, Huibin Han, Alexandra Chanoca, Davy Opdenacker, Jacob Pollier, Véronique Storme, Ward Steenackers, Mussa Quareshy, Richard Napier, Tom Beeckman, Jiří Friml, Bert De Rybel, Wout Boerjan, Bartel Vanholme

(2021/06) - New Phytologist

DOI
1840. The heat is on: how crop growth, development, and yield respond to high temperature

Tingting Zhu, Cassio Flavio Fonseca De Lima, Ive De Smet, Steve Penfield

(2021/06) - Journal of Experimental Botany

DOI
1839. Drought affects the rate and duration of organ growth but not inter-organ growth coordination.

Verbraeken L, Wuyts N, Mertens S, Cannoot B, Maleux K, Demuynck K, De Block J, Merchie J, Dhondt S, Bonaventure G, Crafts-Brandner S, Vogel J, Nelissen H

(2021/06) - Plant physiology

DOI
1838. Lateral Root Initiation and the Analysis of Gene Function Using Genome Editing with CRISPR in Arabidopsis.

Vangheluwe N, Beeckman T

(2021/06) - Genes

DOI
1837. CRISPR screens in plants: approaches, guidelines, and future prospects

Christophe Gaillochet, Ward Develtere, Thomas B Jacobs

(2021/05) - The Plant Cell

DOI
1836. AGC kinases and MAB4/MEL proteins maintain PIN polarity by limiting lateral diffusion in plant cells

Matouš Glanc, Kasper Van Gelderen, Lukas Hoermayer, Shutang Tan, Satoshi Naramoto, Xixi Zhang, David Domjan, Ludmila Včelařová, Robert Hauschild, Alexander Johnson, Edward de Koning, Maritza van Dop, Eike Rademacher, Stef Janson, Xiaoyu Wei, Gergely Molnár, Matyáš Fendrych, Bert De Rybel, Remko Offringa, Jiří Friml

(2021/05) - Current Biology

DOI
1835. First draft genome assembly of the desert locust, Schistocerca gregaria

Heleen Verlinden, Lieven Sterck, Jia Li, Zhen Li, Anna Yssel, Yannick Gansemans, Rik Verdonck, Michiel Holtof, Hojun Song, Spencer T. Behmer, Gregory A. Sword, Tom Matheson, Swidbert R. Ott, Dieter Deforce, Filip Van Nieuwerburgh, Yves Van de Peer, Jozef Vanden Broeck

(2021/05) - F1000Research

DOI
1834. Arabidopsis casein kinase 2 triggers stem cell exhaustion under Al toxicity and phosphate deficiency through activating the DNA damage response pathway.

Wei P, Demulder M, David P, Eekhout T, Yoshiyama KO, Nguyen L, Vercauteren I, Eeckhout D, Galle M, De Jaeger G, Larsen P, Audenaert D, Desnos T, De Veylder L

(2021/05) - The Plant cell

DOI
1833. Contemporary proteomic strategies for cysteine redoxome profiling

Patrick Willems, Frank Van Breusegem, Jingjing Huang

(2021/05) - Plant Physiology

DOI
1832. Plant redox biology—on the move

Peter Geigenberger, Nicholas Smirnoff, Frank Van Breusegem, Karl-Josef Dietz, Graham Noctor

(2021/05) - Plant Physiology

DOI
1831. The membrane-localized protein kinase MAP4K4/TOT3 regulates thermomorphogenesis

Lam Dai Vu, Xiangyu Xu, Tingting Zhu, Lixia Pan, Martijn van Zanten, Dorrit de Jong, Yaowei Wang, Tim Vanremoortele, Anna M. Locke, Brigitte van de Cotte, Nancy De Winne, Elisabeth Stes, Eugenia Russinova, Geert De Jaeger, Daniël Van Damme, Cristobal Uauy, Kris Gevaert, Ive De Smet

(2021/05) - Nature Communications

DOI
1830. Distinct EH domains of the endocytic TPLATE complex confer lipid and protein binding.

Yperman K, Papageorgiou AC, Merceron R, De Munck S, Bloch Y, Eeckhout D, Jiang Q, Tack P, Grigoryan R, Evangelidis T, Van Leene J, Vincze L, Van Damme D

(2021/05) - Nature communications

DOI
1829. Motif-based endomembrane trafficking

Deepanksha Arora, Daniёl Van Damme

(2021/05) - Plant Physiology

DOI
1828. Visualizing protein–protein interactions in plants by rapamycin-dependent delocalization

Joanna Winkler, Evelien Mylle, Andreas De Meyer, Benjamin Pavie, Julie Merchie, Peter Grones, Daniel Van Damme

(2021/05) - The Plant Cell

DOI
1827. The membrane-localized protein kinase MAP4K4/TOT3 regulates thermomorphogenesis.

Vu LD, Xu X, Zhu T, Pan L, van Zanten M, de Jong D, Wang Y, Vanremoortele T, Locke AM, van de Cotte B, De Winne N, Stes E, Russinova E, De Jaeger G, De Smet I

(2021/05) - Nature communications

DOI
1826. Getting to the root of belowground high temperature responses in plants

Cassio Flavio Fonseca de Lima, Jürgen Kleine-Vehn, Ive De Smet, Elena Feraru

(2021/05) - Journal of Experimental Botany

DOI
1825. Why and How to Dig into Plant Metabolite-Protein Interactions.

Venegas-Molina J, Molina-Hidalgo FJ, Clicque E, Goossens A

(2021/05) - Trends in plant science

DOI
1824. Subfunctionalization of Paralog Transcription Factors Contributes to Regulation of Alkaloid Pathway Branch Choice in Catharanthus roseus.

Colinas M, Pollier J, Vaneechoutte D, Malat DG, Schweizer F, De Milde L, De Clercq R, Guedes JG, Martínez-Cortés T, Molina-Hidalgo FJ, Sottomayor M, Goossens A

(2021/05) - Frontiers in plant science

DOI
1823. The mechanism of auxin transport in lateral root spacing

Jian Chen, Hugues De Gernier, Alaeddine Safi, Tom Beeckman, Steffen Vanneste

(2021/05) - Molecular Plant

DOI
1822. Efficient simultaneous mutagenesis of multiple genes in specific plant tissues by multiplex CRISPR

Norbert Bollier, Rafael Andrade Buono, Thomas B. Jacobs, Moritz K. Nowack

(2021/04) - Plant Biotechnology Journal

DOI
1821. Conditional destabilization of the TPLATE complex impairs endocytic internalization.

Wang J, Yperman K, Grones P, Jiang Q, Dragwidge J, Mylle E, Mor E, Nolf J, Eeckhout D, De Jaeger G, De Rybel B, Pleskot R, Van Damme D

(2021/04) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1820. Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)

Xiao Ma, Jeanine L. Olsen, Thorsten B.H. Reusch, Gabriele Procaccini, Dave Kudrna, Melissa Williams, Jane Grimwood, Shanmugam Rajasekar, Jerry Jenkins, Jeremy Schmutz, Yves Van de Peer

(2021/04) - F1000Research

DOI
1819. Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators.

De Clercq I, Van de Velde J, Luo X, Liu L, Storme V, Van Bel M, Pottie R, Vaneechoutte D, Van Breusegem F, Vandepoele K

(2021/04) - Nature plants

DOI
1818. Two chemically distinct root lignin barriers control solute and water balance

Guilhem Reyt, Priya Ramakrishna, Isai Salas-González, Satoshi Fujita, Ashley Love, David Tiemessen, Catherine Lapierre, Kris Morreel, Monica Calvo-Polanco, Paulina Flis, Niko Geldner, Yann Boursiac, Wout Boerjan, Michael W. George, Gabriel Castrillo, David E. Salt

(2021/04) - Nature Communications

DOI
1817. Plant flavones enrich rhizosphere Oxalobacteraceae to improve maize performance under nitrogen deprivation.

Yu P, He X, Baer M, Beirinckx S, Tian T, Moya YAT, Zhang X, Deichmann M, Frey FP, Bresgen V, Li C, Razavi BS, Schaaf G, von Wirén N, Su Z, Bucher M, Tsuda K, Goormachtig S, Chen X, Hochholdinger F

(2021/04) - Nature Plants

DOI
1816. Efficient simultaneous mutagenesis of multiple genes in specific plant tissues by multiplex CRISPR

Norbert Bollier, Rafael Andrade Buono, Thomas B. Jacobs, Moritz K. Nowack

(2021/04) - Plant Biotechnology Journal

DOI
1815. Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators.

De Clercq I, Van de Velde J, Luo X, Liu L, Storme V, Van Bel M, Pottie R, Vaneechoutte D, Van Breusegem F, Vandepoele K

(2021/04) - Nature plants

DOI
1814. Conditional destabilization of the TPLATE complex impairs endocytic internalization.

Wang J, Yperman K, Grones P, Jiang Q, Dragwidge J, Mylle E, Mor E, Nolf J, Eeckhout D, De Jaeger G, De Rybel B, Pleskot R, Van Damme D

(2021/04) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1813. Modulation of Arabidopsis root growth by specialized triterpenes

Yuechen Bai, Patricia Fernández‐Calvo, Andrés Ritter, Ancheng C. Huang, Stefania Morales‐Herrera, Keylla U. Bicalho, Michal Karady, Laurens Pauwels, Dieter Buyst, Maria Njo, Karen Ljung, José C. Martins, Steffen Vanneste, Tom Beeckman, Anne Osbourn, Alain Goossens, Jacob Pollier

(2021/04) - New Phytologist

DOI
1812. The dynamics of maize leaf development: Patterned to grow while growing a pattern.

Strable J, Nelissen H

(2021/04) - Current opinion in plant biology

DOI
1811. SAMBA controls the rate of cell division in maize development through APC/C interaction

Gong P, Bontinck M, Demuynck K, De Block J, Gevaert K, Eeckhout D, Persiau G, Aesaert S, Coussens G, Van Lijsebettens M, Pauwels L, De Jaeger G, Nelissen H

(2021/04) -

DOI
1810. Seedling developmental defects upon blocking CINNAMATE-4-HYDROXYLASE are caused by perturbations in auxin transport.

El Houari I, Van Beirs C, Arents HE, Han H, Chanoca A, Opdenacker D, Pollier J, Storme V, Steenackers W, Quareshy M, Napier R, Beeckman T, Friml J, Vanholme B

(2021/04) - The New phytologist

DOI
1809. Modulation of Arabidopsis root growth by specialized triterpenes

Yuechen Bai, Patricia Fernández‐Calvo, Andrés Ritter, Ancheng C. Huang, Stefania Morales‐Herrera, Keylla U. Bicalho, Michal Karady, Laurens Pauwels, Dieter Buyst, Maria Njo, Karen Ljung, José C. Martins, Steffen Vanneste, Tom Beeckman, Anne Osbourn, Alain Goossens, Jacob Pollier

(2021/04) - New Phytologist

DOI
1808. Voices of biotech research

Nasim Annabi, Matthew Baker, Alistair Boettiger, Debojyoti Chakraborty, Yvonne Chen, Kizzmekia S. Corbett, Bruno Correia, James Dahlman, Tulio de Oliveira, Ali Ertuerk, Mehmet Fatih Yanik, Elizabeth Henaff, Meritxell Huch, Iliyan D. Iliev, Thomas Jacobs, Howard Junca, Albert Keung, Ilana Kolodkin-Gal, Smita Krishnaswamy, Madeline Lancaster, Evan Macosko, Mario Alberto Martínez-Núñez, Kyoko Miura, Jenny Molloy, Andrés Ochoa Cruz, Randall J. Platt, Avery D. Posey, Huilin Shao, Mijo Simunovic, Nikolai Slavov, Takanori Takebe, Luk H. Vandenberghe, Rajeev K. Varshney, Jianbin Wang

(2021/03) - Nature Biotechnology

DOI
1807. Advances and Opportunities of Single-Cell Transcriptomics for Plant Research.

Seyfferth C, Renema J, Wendrich JR, Eekhout T, Seurinck R, Vandamme N, Blob B, Saeys Y, Helariutta Y, Birnbaum KD, De Rybel B

(2021/03) - Annual review of plant biology

DOI
1806. Polyploidy: an evolutionary and ecological force in stressful times

Yves Van de Peer, Tia-Lynn Ashman, Pamela S Soltis, Douglas E Soltis

(2021/03) - The Plant Cell

DOI
1805. Drought affects the rate and duration of organ growth but not inter-organ growth coordination

Lennart Verbraeken, Nathalie Wuyts, Stien Mertens, Bernard Cannoot, Katrien Maleux, Kirin Demuynck, Jolien De Block, Julie Merchie, Stijn Dhondt, Gustavo Bonaventure, Steven Crafts-Brandner, Jonathan Vogel, Wesley Bruce, Dirk Inzé, Steven Maere, Hilde Nelissen

(2021/03) - Plant Physiology

DOI
1804. Nanobody-Dependent Delocalization of Endocytic Machinery in Arabidopsis Root Cells Dampens Their Internalization Capacity.

Winkler J, De Meyer A, Mylle E, Storme V, Grones P, Van Damme D

(2021/03) - Frontiers in plant science

DOI
1803. Auxin-responsive (phospho)proteome analysis reveals regulation of cell cycle and ethylene signaling during rice crown root development

Harshita Singh, Zeenu Singh, Tingting Zhu, Xiangyu Xu, Bhairavnath Waghmode, Tushar Garg, Shivani Yadav, Debabrata Sircar, Ive De Smet, Shri Ram Yadav

(2021/03) -

DOI
1802. Auxin-triggered changes in the Arabidopsis root tip (phospho)proteome reveal novel root growth regulators

Ive De Smet, Natalia Nikonorova, Evan Murphy, Cassio Flavio Fonseca de Lima, Shanshuo Zhu, Brigitte van de Cotte, Lam Dai Vu, Daria Balcerowicz, Lanxin Li, Xiangpei Kong, Gieljan De Rop, Tom Beeckman, Jiří Friml, Kris Vissenberg, Peter C. Morris, Zhaojun Ding

(2021/03) -

DOI
1801. Pathogen Effectors: Exploiting the Promiscuity of Plant Signaling Hubs.

Ceulemans E, Ibrahim HMM, De Coninck B, Goossens A

(2021/03) - Trends in plant science

DOI
1800. An RNA in situ hybridization protocol optimized for monocot tissue.

Zöllner NR, Bezrutczyk M, Laureyns R, Nelissen H, Simon R, Frommer WB

(2021/03) - STAR protocols

DOI
1799. Molecular architecture of the endocytic TPLATE complex

Klaas Yperman, Jie Wang, Dominique Eeckhout, Joanna Winkler, Lam Dai Vu, Michael Vandorpe, Peter Grones, Evelien Mylle, Michael Kraus, Romain Merceron, Jonah Nolf, Eliana Mor, Pieter De Bruyn, Remy Loris, Martin Potocký, Savvas N. Savvides, Bert De Rybel, Geert De Jaeger, Daniël Van Damme, Roman Pleskot

(2021/02) - Science Advances

DOI
1798. The Arabidopsis GRAS-type SCL28 transcription factor controls the mitotic cell cycle and division plane orientation

Camila Goldy, José-Antonio Pedroza-Garcia, Natalie Breakfield, Toon Cools, Rodrigo Vena, Philip N. Benfey, Lieven De Veylder, Javier Palatnik, Ramiro E. Rodriguez

(2021/02) - Proceedings of the National Academy of Sciences

DOI
1797. Proximal Hyperspectral Imaging Detects Diurnal and Drought-Induced Changes in Maize Physiology

Stien Mertens, Lennart Verbraeken, Heike Sprenger, Kirin Demuynck, Katrien Maleux, Bernard Cannoot, Jolien De Block, Steven Maere, Hilde Nelissen, Gustavo Bonaventure, Steven J. Crafts-Brandner, Jonathan T. Vogel, Wesley Bruce, Dirk Inzé, Nathalie Wuyts

(2021/02) - Frontiers in Plant Science

DOI
1796. A Phelipanche ramosa KAI2 protein perceives strigolactones and isothiocyanates enzymatically.

de Saint Germain A, Jacobs A, Brun G, Pouvreau JB, Braem L, Cornu D, Clavé G, Baudu E, Steinmetz V, Servajean V, Wicke S, Gevaert K, Simier P, Goormachtig S, Delavault P, Boyer FD

(2021/02) - Plant Communications

DOI
1795. Molecular architecture of the endocytic TPLATE complex

Klaas Yperman, Jie Wang, Dominique Eeckhout, Joanna Winkler, Lam Dai Vu, Michael Vandorpe, Peter Grones, Evelien Mylle, Michael Kraus, Romain Merceron, Jonah Nolf, Eliana Mor, Pieter De Bruyn, Remy Loris, Martin Potocký, Savvas N. Savvides, Bert De Rybel, Geert De Jaeger, Daniël Van Damme, Roman Pleskot

(2021/02) - Science Advances

DOI
1794. The Heat Shock Protein 40-Type Chaperone MASH Supports the Endoplasmic Reticulum-Associated Degradation E3 Ubiquitin Ligase MAKIBISHI1 in Medicago truncatula.

Erffelinck ML, Ribeiro B, Gryffroy L, Rai A, Pollier J, Goossens A

(2021/02) - Frontiers in plant science

DOI
1793. Dissecting cholesterol and phytosterol biosynthesis via mutants and inhibitors

Kjell De Vriese, Jacob Pollier, Alain Goossens, Tom Beeckman, Steffen Vanneste, John Lunn

(2021/02) - Journal of Experimental Botany

DOI
1792. Proximal Hyperspectral Imaging Detects Diurnal and Drought-Induced Changes in Maize Physiology.

Mertens S, Verbraeken L, Sprenger H, Demuynck K, Maleux K, Cannoot B, De Block J, Maere S, Nelissen H, Bonaventure G, Crafts-Brandner SJ, Vogel JT, Wuyts N

(2021/02) - Frontiers in plant science

DOI
1791. Phellem translational landscape throughout secondary development inArabidopsisroots

Leal AR, Barros PM, Parizot B, Sapeta H, Vangheluwe N, Andersen TG, Beeckman T, Oliveira MM

(2021/02) -

DOI
1790. Dissecting cholesterol and phytosterol biosynthesis via mutants and inhibitors

Kjell De Vriese, Jacob Pollier, Alain Goossens, Tom Beeckman, Steffen Vanneste, John Lunn

(2021/02) - Journal of Experimental Botany

DOI
1789. GoldenGateway: A DNA Assembly Method for Plant Biotechnology

Mansour Karimi, Thomas B. Jacobs

(2021/01) - Trends in Plant Science

DOI
1788. Efficient CRISPR-mediated base editing in Agrobacterium spp.

Savio Rodrigues, Mansour Karimi, lennert impens, Els Van Lerberge, Griet Coussens, Stijn Aesaert, Debbie Rombaut, Dominique Holtappels, Heba M. M. Ibrahim, Marc Van Montagu, Jeroen Wagemans, Thomas B. Jacobs, Barbara De Coninck, Laurens Pauwels

(2021/01) - Proceedings of the National Academy of Sciences

DOI
1787. Phototropin 1 and 2 Influence Photosynthesis, UV-C Induced Photooxidative Stress Responses, and Cell Death

Anna Rusaczonek, Weronika Czarnocka, Patrick Willems, Marzena Sujkowska-Rybkowska, Frank Van Breusegem, Stanisław Karpiński

(2021/01) - Cells

DOI
1786. Rewired phenolic metabolism and improved saccharification efficiency of a Zea mays cinnamyl alcohol dehydrogenase 2 (zmcad2) mutant.

Liu X, Van Acker R, Voorend W, Pallidis A, Goeminne G, Pollier J, Morreel K, Kim H, Muylle H, Bosio M, Ralph J, Vanholme R, Boerjan W

(2021/01) - The Plant journal : for cell and molecular biology

DOI
1785. Maize specialized metabolome networks reveal organ-preferential mixed glycosides.

Desmet S, Saeys Y, Verstaen K, Dauwe R, Kim H, Niculaes C, Fukushima A, Goeminne G, Vanholme R, Ralph J, Boerjan W, Morreel K

(2021/01) - Computational and structural biotechnology journal

DOI
1784. Unraveling the MAX2 Protein Network in Arabidopsis thaliana: Identification of the Protein Phosphatase PAPP5 as a Novel MAX2 Interactor.

Struk S, De Cuyper C, Jacobs A, Braem L, Walton A, De Keyser A, Depuydt S, Vu LD, De Smet I, Boyer F-D, Eeckhout D, Persiau G, Gevaert K, De Jaeger G, Goormachtig S

(2021/01) - Molecular & Cellular Proteomics

DOI
1783. Turgor-time controls grass leaf elongation rate and duration under drought stress.

Coussement JR, Villers SLY, Nelissen H, Inzé D, Steppe K

(2021/01) - Plant, cell & environment

DOI
1782. The Screening for Novel Inhibitors of Auxin-Induced Ca²⁺ Signaling.

De Vriese K, Nguyen L, Stael S, Audenaert D, Beeckman T, Vanneste S

(2021/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1781. Auxin-Regulated Reversible Inhibition of TMK1 Signaling by MAKR2 Modulates the Dynamics of Root Gravitropism

Maria Mar Marquès-Bueno, Laia Armengot, Lise C. Noack, Joseph Bareille, Lesia Rodriguez, Matthieu Pierre Platre, Vincent Bayle, Mengying Liu, Davy Opdenacker, Steffen Vanneste, Barbara K. Möller, Zachary L. Nimchuk, Tom Beeckman, Ana I. Caño-Delgado, Jiří Friml, Yvon Jaillais

(2021/01) - Current Biology

DOI
1780. The development of crop root architecture and optimization of nutrition acquisition: the case of rice

Wei Xuan, Yuanming Xie, Tom Beeckman

(2021/01) - Understanding and improving crop root function

DOI
1779. An auxin-regulable oscillatory circuit drives the root clock in Arabidopsis

Juan Perianez-Rodriguez, Marcos Rodriguez, Marco Marconi, Estefano Bustillo-Avendaño, Guy Wachsman, Alvaro Sanchez-Corrionero, Hugues De Gernier, Javier Cabrera, Pablo Perez-Garcia, Inmaculada Gude, Angela Saez, Laura Serrano-Ron, Tom Beeckman, Philip N. Benfey, Alfonso Rodríguez-Patón, Juan Carlos del Pozo, Krzysztof Wabnik, Miguel A. Moreno-Risueno

(2021/01) - Science Advances

DOI
1778. Optimizing lignocellulosic biomass for the biorefinery and developing tools to facilitate the introduction of genome-engineered poplars into the field

Lennart Hoengenaert

(2021) -

No link available
1777. The emergence and evolution of intron-poor and intronless genes in intron-rich plant gene families

Liu, H., Lyu, H.-M., Zhu, K., Van de Peer, Y., Cheng, Z.-M.

(2021) - Plant Journal

DOI
1776. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp

Farhat, S., Le, P., Kayal, E., Noel, B., Bigeard, E., Corre, E., Maumus, F., Florent, I., Alberti, A., Aury, J.-M., Barbeyron, T., Cai, R., Da Silva, C., Istace, B., Labadie, K., Marie, D., Mercier, J., Rukwavu, T., Szymczak, J., Tonon, T., Alves-de-Souza, C., Rouzé, P., Van de Peer, Y., Wincker, P., Rombauts, S., Porcel, B.M., Guillou, L.

(2021) - BMC Biology

DOI
1775. Transcriptomic analysis of the poultry red mite, Dermanyssus gallinae, across all stages of the lifecycle

Bartley, K., Chen, W., Lloyd Mills, R.I., Nunn, F., Price, D.R.G., Rombauts, S., Van de Peer, Y., Roy, L., Nisbet, A.J., Burgess, S.T.G.

(2021) - BMC Genomics

DOI
1774. Genome sequence and genetic diversity analysis of an under-domesticated orphan crop, white fonio (Digitaria exilis)

Wang, X., Chen, S., Ma, X., Yssel, A.E.J., Chaluvadi, S.R., Johnson, M.S., Gangashetty, P., Hamidou, F., Sanogo, M.D., Zwaenepoel, A., Wallace, J., Van De Peer, Y., Bennetzen, J.L., Van Deynze, A.

(2021) - GigaScience

DOI
1773. Incorporation of catechyl monomers into lignins: lignification from the non-phenolic endviaDiels–Alder cycloaddition?

Daisuke Ando, Fachuang Lu, Hoon Kim, Alexis Eugene, Yuki Tobimatsu, Ruben Vanholme, Thomas J. Elder, Wout Boerjan, John Ralph

(2021) - Green Chemistry

DOI
1772. Bioassays for the Effects of Strigolactones and Other Small Molecules on Root and Root Hair Development

José Antonio Villaécija-Aguilar, Sylwia Struk, Sofie Goormachtig, Caroline Gutjahr

(2021) - Methods in Molecular Biology

DOI
1771. Unraveling the MAX2 Protein Network in Arabidopsis thaliana: Identification of the Protein Phosphatase PAPP5 as a Novel MAX2 Interactor

Sylwia Struk, Carolien De Cuyper, Anse Jacobs, Lukas Braem, Alan Walton, Annick De Keyser, Stephen Depuydt, Lam Dai Vu, Ive De Smet, François-Didier Boyer, Dominique Eeckhout, Geert Persiau, Kris Gevaert, Geert De Jaeger, Sofie Goormachtig

(2021) - Molecular & Cellular Proteomics

DOI
1770. A molecular toolkit for the green seaweedUlva mutabilis

Jonas Blomme, Xiaojie Liu, Thomas B. Jacobs, Olivier De Clerck

(2020/12) -

DOI
1769. Establishment of CRISPR/Cas9 Genome Editing in Witloof (Cichorium intybus var. foliosum)

Charlotte De Bruyn, Tom Ruttink, Tom Eeckhaut, Thomas Jacobs, Ellen De Keyser, Alain Goossens, Katrijn Van Laere

(2020/12) - Frontiers in Genome Editing

DOI
1768. Seeing the forest for the trees: Retrieving plant secondary biochemical pathways from metabolome networks.

Desmet S, Brouckaert M, Boerjan W, Morreel K

(2020/12) - Computational and structural biotechnology journal

DOI
1767. Using single‐plant‐omics in the field to link maize genes to functions and phenotypes

Daniel Felipe Cruz, Sam De Meyer, Joke Ampe, Heike Sprenger, Dorota Herman, Tom Van Hautegem, Jolien De Block, Dirk Inzé, Hilde Nelissen, Steven Maere

(2020/12) - Molecular Systems Biology

DOI
1766. Establishment of CRISPR/Cas9 Genome Editing in Witloof (Cichorium intybus var. foliosum).

De Bruyn C, Ruttink T, Eeckhaut T, Jacobs T, De Keyser E, Goossens A, Van Laere K

(2020/12) - Frontiers in genome editing

DOI
1765. Using single-plant-omics in the field to link maize genes to functions and phenotypes.

Cruz DF, De Meyer S, Ampe J, Sprenger H, Herman D, Van Hautegem T, De Block J, Inzé D, Nelissen H, Maere S

(2020/12) - Molecular systems biology

DOI
1764. Efficient simultaneous mutagenesis of multiple genes in specific plant tissues by multiplex CRISPR

Norbert Bollier, Rafael Andrade Buono, Thomas B. Jacobs, Moritz K. Nowack

(2020/11) -

DOI
1763. Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions

Jos R. Wendrich, BaoJun Yang, Niels Vandamme, Kevin Verstaen, Wouter Smet, Celien Van de Velde, Max Minne, Brecht Wybouw, Eliana Mor, Helena E. Arents, Jonah Nolf, Julie Van Duyse, Gert Van Isterdael, Steven Maere, Yvan Saeys, Bert De Rybel

(2020/11) - Science

DOI
1762. Visualising endocytosis in plants: past, present, and future

J.M. DRAGWIDGE, D. VAN DAMME

(2020/11) - Journal of Microscopy

DOI
1761. An MAP Kinase Cascade Downstream of RGF/GLV Peptides and Their RGI Receptors Regulates Root Development

Ana I. Fernandez, Tom Beeckman

(2020/11) - Molecular Plant

DOI
1760. Receptor kinase module targets PIN-dependent auxin transport during canalization

Jakub Hajný, Tomáš Prát, Nikola Rydza, Lesia Rodriguez, Shutang Tan, Inge Verstraeten, David Domjan, Ewa Mazur, Elwira Smakowska-Luzan, Wouter Smet, Eliana Mor, Jonah Nolf, BaoJun Yang, Wim Grunewald, Gergely Molnár, Youssef Belkhadir, Bert De Rybel, Jiří Friml

(2020/10) - Science

DOI
1759. Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta.

Bilcke G, Van den Berge K, De Decker S, Bonneure E, Poulsen N, Bulankova P, Osuna-Cruz CM, Dickenson J, Sabbe K, Pohnert G, Vandepoele K, Vyverman W

(2020/10) - The ISME journal

DOI
1758. Tailoring poplar lignin without yield penalty by combining a null and haploinsufficient CINNAMOYL-CoA REDUCTASE2 allele.

De Meester B, Madariaga Calderón B, de Vries L, Pollier J, Goeminne G, Van Doorsselaere J, Chen M, Ralph J, Vanholme R, Boerjan W

(2020/10) - Nature communications

DOI
1757. Chorismate mutase and isochorismatase, two potential effectors of the migratory nematode Hirschmanniella oryzae, increase host susceptibility by manipulating secondary metabolite content of rice.

Bauters L, Kyndt T, De Meyer T, Morreel K, Boerjan W, Lefevere H, Gheysen G

(2020/10) - Molecular plant pathology

DOI
1756. Daring to be differential: metabarcoding analysis of soil and plant-related microbial communities using amplicon sequence variants and operational taxonomical units.

Joos L, Beirinckx S, Haegeman A, Debode J, Vandecasteele B, Baeyen S, Goormachtig S, Clement L, De Tender C

(2020/10) - BMC genomics

DOI
1755. Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions.

Wendrich JR, Yang B, Vandamme N, Verstaen K, Smet W, Van de Velde C, Minne M, Wybouw B, Mor E, Arents HE, Nolf J, Van Duyse J, Van Isterdael G, De Rybel B

(2020/09) - Science (New York, N.Y.)

DOI
1754. Model-Based Detection of Whole-Genome Duplications in a Phylogeny.

Zwaenepoel A, Van de Peer Y

(2020/09) - Molecular biology and evolution

DOI
1753. Chemical Genetics Approach Identifies Abnormal Inflorescence Meristem 1 as a Putative Target of a Novel Sulfonamide That Protects Catalase2-Deficient Arabidopsis against Photorespiratory Stress.

van der Meer T, Verlee A, Willems P, Impens F, Gevaert K, Testerink C, Stevens CV, Van Breusegem F, Kerchev P

(2020/09) - Cells

DOI
1752. Cell wall remodeling under salt stress: Insights into changes in polysaccharides, feruloylation, lignification, and phenolic metabolism in maize

Dyoni M. Oliveira, Thatiane R. Mota, Fábio V. Salatta, Renata C. Sinzker, Radka Končitíková, David Kopečný, Rachael Simister, Mariana Silva, Geert Goeminne, Kris Morreel, Jorge Rencoret, Ana Gutiérrez, Theodora Tryfona, Rogério Marchiosi, Paul Dupree, José C. del Río, Wout Boerjan, Simon J. McQueen‐Mason, Leonardo D. Gomez, Osvaldo Ferrarese‐Filho, Wanderley D. dos Santos

(2020/09) - Plant, Cell & Environment

DOI
1751. Keeping in Touch with Type-III Secretion System Effectors: Mass Spectrometry-Based Proteomics to Study Effector-Host Protein-Protein Interactions.

Meyer M, Ryck J, Goormachtig S, Van Damme P

(2020/09) - International journal of molecular sciences

DOI
1750. Endocytosis of BRASSINOSTEROID INSENSITIVE1 Is Partly Driven by a Canonical Tyr-Based Motif.

Liu D, Kumar R, Claus LAN, Johnson AJ, Siao W, Vanhoutte I, Wang P, Bender KW, Yperman K, Martins S, Zhao X, Vert G, Van Damme D, Friml J, Russinova E

(2020/09) - The Plant cell

DOI
1749. Pharmacological and genetic manipulations of Ca2+signaling have contrasting effects on auxin-regulated trafficking

Ren Wang, Ellie Himschoot, Matteo Grenzi, Jian Chen, Melanie Krebs, Karin Schumacher, Moritz K. Nowack, Daniël Van Damme, Ive De Smet, Tom Beeckman, Alex Costa, Jiří Friml, Steffen Vanneste

(2020/09) -

DOI
1748. Pharmacological and genetic manipulations of Ca²⁺signaling have contrasting effects on auxin-regulated trafficking

Wang R, Himschoot E, Grenzi M, Chen J, Krebs M, Schumacher K, Nowack MK, Van Damme D, De Smet I, Beeckman T, Costa A, Friml J, Vanneste S

(2020/09) -

DOI
1747. A pHantastic ammonium response.

Motte H, Beeckman T

(2020/09) - Nature plants

DOI
1746. Rice plants respond to ammonium stress by adopting a helical root growth pattern.

Jia L, Xie Y, Wang Z, Luo L, Zhang C, Pélissier PM, Parizot B, Qi W, Zhang J, Hu Z, Motte H, Luo L, Xu G, Beeckman T, Xuan W

(2020/09) - The Plant journal : for cell and molecular biology

DOI
1745. The evolutionary conundrum of whole‐genome duplication

Lorenzo Carretero‐Paulet, Yves Van de Peer

(2020/08) - American Journal of Botany

DOI
1744. Ectopic Expression of a Self-Incompatibility Module Triggers Growth Arrest and Cell Death in Vegetative Cells

Zongcheng Lin, Fei Xie, Marina Triviño, Mansour Karimi, Maurice Bosch, Vernonica E. Franklin-Tong, Moritz K. Nowack

(2020/08) - Plant Physiology

DOI
1743. Conservation of centromeric histone 3 interaction partners in plants.

Keçeli BN, Jin C, Van Damme D, Geelen D

(2020/08) - Journal of experimental botany

DOI
1742. Establishment of Proximity-Dependent Biotinylation Approaches in Different Plant Model Systems.

Arora D, Abel NB, Liu C, Van Damme P, Yperman K, Eeckhout D, Vu LD, Wang J, Tornkvist A, Impens F, Korbei B, Van Leene J, Goossens A, De Jaeger G, Van Damme D

(2020/08) - The Plant cell

DOI
1741. Genomes on Canvas: Artist's Perspective on Evolution of Plant-Based Foods.

Vergauwen D, De Smet I

(2020/08) - Trends in plant science

DOI
1740. Expanding the Mitogen-Activated Protein Kinase (MAPK) Universe: An Update on MAP4Ks.

Pan L, De Smet I

(2020/08) - Frontiers in plant science

DOI
1739. FRS7 and FRS12 recruit NINJA to regulate expression of glucosinolate biosynthesis genes

Patricia Fernández‐Calvo, Sabrina Iñigo, Gaétan Glauser, Robin Vanden Bossche, Michelle Tang, Baohua Li, Rebecca De Clercq, Astrid Nagels Durand, Dominique Eeckhout, Kris Gevaert, Geert De Jaeger, Siobhan M. Brady, Daniel J. Kliebenstein, Laurens Pauwels, Alain Goossens, Andrés Ritter

(2020/08) - New Phytologist

DOI
1738. The Molecular Basis of JAZ-MYC Coupling, a Protein-Protein Interface Essential for Plant Response to Stressors.

Oña Chuquimarca S, Ayala-Ruano S, Goossens J, Pauwels L, Goossens A, Leon-Reyes A, Ángel Méndez M

(2020/08) - Frontiers in plant science

DOI
1737. Establishment of Proximity-Dependent Biotinylation Approaches in Different Plant Model Systems.

Arora D, Abel NB, Liu C, Van Damme P, Yperman K, Eeckhout D, Vu LD, Wang J, Tornkvist A, Impens F, Korbei B, Van Leene J, Goossens A, De Jaeger G, Van Damme D

(2020/08) - The Plant cell

DOI
1736. The CEP5 Peptide Promotes Abiotic Stress Tolerance, As Revealed by Quantitative Proteomics, and Attenuates the AUX/IAA Equilibrium in Arabidopsis

Stephanie Smith, Shanshuo Zhu, Lisa Joos, Ianto Roberts, Natalia Nikonorova, Lam Dai Vu, Elisabeth Stes, Hyunwoo Cho, Antoine Larrieu, Wei Xuan, Benjamin Goodall, Brigitte van de Cotte, Jessic Marie Waite, Adeline Rigal, Sigurd Ramans Harborough, Geert Persiau, Steffen Vanneste, Gwendolyn K. Kirschner, Elien Vandermarliere, Lennart Martens, Yvonne Stahl, Dominique Audenaert, Jirí Friml, Georg Felix, Rüdiger Simon, Malcolm J. Bennett, Anthony Bishopp, Geert De Jaeger, Karin Ljung, Stefan Kepinski, Stephanie Robert, Jennifer Nemhauser, Ildoo Hwang, Kris Gevaert, Tom Beeckman, Ive De Smet

(2020/08) - Molecular & Cellular Proteomics

DOI
1735. The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms.

Osuna-Cruz CM, Bilcke G, Vancaester E, De Decker S, Bones AM, Winge P, Poulsen N, Bulankova P, Verhelst B, Audoor S, Belisova D, Pargana A, Russo M, Vandepoele K

(2020/07) - Nature communications

DOI
1734. The Cyclin CYCA3;4 Is a Postprophase Target of the APC/C^CCS52A2 E3-Ligase Controlling Formative Cell Divisions in Arabidopsis.

Willems A, Heyman J, Eekhout T, Achon I, Pedroza-Garcia JA, Zhu T, Li L, Vercauteren I, Van den Daele H, van de Cotte B, De Smet I, De Veylder L

(2020/07) - The Plant cell

DOI
1733. Identification of Sulfenylated Cysteines in Arabidopsis thaliana Proteins Using a Disulfide-Linked Peptide Reporter.

Wei B, Willems P, Huang J, Tian C, Yang J, Messens J, Van Breusegem F

(2020/07) - Frontiers in plant science

DOI
1732. Novel Role of JAC1 in Influencing Photosynthesis, Stomatal Conductance, and Photooxidative Stress Signalling Pathway in Arabidopsis thaliana.

Czarnocka W, Rusaczonek A, Willems P, Sujkowska-Rybkowska M, Van Breusegem F, Karpiński S

(2020/07) - Frontiers in plant science

DOI
1731. Characterization of the UDP-glycosyltransferase UGT72 Family in Poplar and Identification of Genes Involved in the Glycosylation of Monolignols

Nathanael Speeckaert, Nassirou Mahamadou Adamou, Hadjara Amadou Hassane, Fabien Baldacci-Cresp, Adeline Mol, Geert Goeminne, Wout Boerjan, Pierre Duez, Simon Hawkins, Godfrey Neutelings, Thomas Hoffmann, Wilfried Schwab, Mondher El Jaziri, Marc Behr, Marie Baucher

(2020/07) - International Journal of Molecular Sciences

DOI
1730. Alterations in the phenylpropanoid pathway affect poplar ability for ectomycorrhizal colonisation and susceptibility to root-knot nematodes.

Behr M, Baldacci-Cresp F, Kohler A, Morreel K, Goeminne G, Van Acker R, Veneault-Fourrey C, Mol A, Pilate G, Boerjan W, de Almeida Engler J, Baucher M

(2020/07) - Mycorrhiza

DOI
1729. Current status of the multinational Arabidopsis community

Geraint Parry, Nicholas J. Provart, Siobhan M. Brady, Baris Uzilday, The Multinational Arabidopsis Steering Committee

(2020/07) - Plant Direct

DOI
1728. Mitochondrial signalling is critical for acclimation and adaptation to flooding in Arabidopsis thaliana

Xiangxiang Meng, Lu Li, Reena Narsai, Inge De Clercq, James Whelan, Oliver Berkowitz

(2020/07) - The Plant Journal

DOI
1727. High Temporal Resolution Reveals Simultaneous Plasma Membrane Recruitment of TPLATE Complex Subunits

Jie Wang, Evelien Mylle, Alexander Johnson, Nienke Besbrugge, Geert De Jaeger, Jiří Friml, Roman Pleskot, Daniel Van Damme

(2020/07) - Plant Physiology

DOI
1726. Fluctuating auxin response gradients determine pavement cell-shape acquisition

Peter Grones, Mateusz Majda, Siamsa M. Doyle, Daniël Van Damme, Stéphanie Robert

(2020/07) - Proceedings of the National Academy of Sciences

DOI
1725. The Cyclin CYCA3;4 Is a Postprophase Target of the APC/C^CCS52A2 E3-Ligase Controlling Formative Cell Divisions in Arabidopsis.

Willems A, Heyman J, Eekhout T, Achon I, Pedroza-Garcia JA, Zhu T, Li L, Vercauteren I, Van den Daele H, van de Cotte B, De Smet I, De Veylder L

(2020/07) - The Plant cell

DOI
1724. A hairy-root transformation protocol for Trigonella foenum-graecum L. as a tool for metabolic engineering and specialised metabolite pathway elucidation.

Garagounis C, Beritza K, Georgopoulou ME, Sonawane P, Haralampidis K, Goossens A, Aharoni A, Papadopoulou KK

(2020/07) - Plant physiology and biochemistry : PPB

DOI
1723. Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds.

Stock F, Bilcke G, De Decker S, Osuna-Cruz CM, Van den Berge K, Vancaester E, De Veylder L, Vandepoele K, Mangelinckx S, Vyverman W

(2020/06) - Frontiers in microbiology

DOI
1722. Rocks in the auxin stream: Wound-induced auxin accumulation and ERF115 expression synergistically drive stem cell regeneration.

Canher B, Heyman J, Savina M, Devendran A, Eekhout T, Vercauteren I, Prinsen E, Matosevich R, Xu J, Mironova V, De Veylder L

(2020/06) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1721. Boosting the Synthesis of Pharmaceutically Active Abietane Diterpenes in S. sclarea Hairy Roots by Engineering the GGPPS and CPPS Genes.

Vaccaro MC, Alfieri M, De Tommasi N, Moses T, Goossens A, Leone A

(2020/06) - Frontiers in plant science

DOI
1720. Combinatorial Control of Plant Specialized Metabolism: Mechanisms, Functions, and Consequences.

Lacchini E, Goossens A

(2020/06) - Annual review of cell and developmental biology

DOI
1719. Pericyclic versus Endodermal Lateral Roots: Which Came First?

Vanneste S, Beeckman T

(2020/06) - Trends in plant science

DOI
1718. Overexpression of the NMig1 Gene Encoding a NudC Domain Protein Enhances Root Growth and Abiotic Stress Tolerance in Arabidopsis thaliana.

Velinov V, Vaseva I, Zehirov G, Zhiponova M, Georgieva M, Vangheluwe N, Beeckman T, Vassileva V

(2020/06) - Frontiers in plant science

DOI
1717. Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus

Polina Yu. Novikova, Rodney Mauricio, Ian G. Brennan, William Booker, Michael Mahony, Paul Doughty, Alan R. Lemmon, Emily Moriarty Lemmon, J. Dale Roberts, Levi Yant, Yves Van de Peer, J. Scott Keogh, Stephen C. Donnellan

(2020/05) - PLOS Genetics

DOI
1716. The CEP5 Peptide Promotes Abiotic Stress Tolerance, As Revealed by Quantitative Proteomics, and Attenuates the AUX/IAA Equilibrium in Arabidopsis.

Smith S, Zhu S, Joos L, Roberts I, Nikonorova N, Vu LD, Stes E, Cho H, Larrieu A, Xuan W, Goodall B, van de Cotte B, Waite JM, Rigal A, De Smet I

(2020/05) - Molecular & cellular proteomics : MCP

DOI
1715. From laboratory to field: yield stability and shade avoidance genes are massively differentially expressed in the field

Hilde Nelissen, Heike Sprenger, Kirin Demuynck, Jolien De Block, Tom Van Hautegem, Alex De Vliegher, Dirk Inzé

(2020/05) - Plant Biotechnology Journal

DOI
1714. GOLVEN peptide signalling through RGI receptors and MPK6 restricts asymmetric cell division during lateral root initiation.

Fernandez AI, Vangheluwe N, Xu K, Jourquin J, Claus LAN, Morales-Herrera S, Parizot B, De Gernier H, Yu Q, Drozdzecki A, Maruta T, Hoogewijs K, Beeckman T

(2020/05) - Nature plants

DOI
1713. Crystal structure of Arabidopsis thaliana casein kinase 2 α1

Manon Demulder, Lieven De Veylder, Remy Loris

(2020/04) - Acta Crystallographica Section F Structural Biology Communications

DOI
1712. Suppressor of Gamma Response 1 Modulates the DNA Damage Response and Oxidative Stress Response in Leaves of Cadmium-Exposed Arabidopsis thaliana.

Hendrix S, Iven V, Eekhout T, Huybrechts M, Pecqueur I, Horemans N, Keunen E, De Veylder L, Vangronsveld J, Cuypers A

(2020/04) - Frontiers in plant science

DOI
1711. A Century-Old Mystery Unveiled: Sekizaisou is a Natural Lignin Mutant

Masanobu Yamamoto, Hirokazu Tomiyama, Akio Koyama, Hisato Okuizumi, Sarah Liu, Ruben Vanholme, Geert Goeminne, Yuta Hirai, Hu Shi, Naoki Takata, Tsutomu Ikeda, Mikiko Uesugi, Hoon Kim, Shingo Sakamoto, Nobutaka Mitsuda, Wout Boerjan, John Ralph, Shinya Kajita, Nuoendagula

(2020/04) - Plant Physiology

DOI
1710. Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions.

Beirinckx S, Viaene T, Haegeman A, Debode J, Amery F, Vandenabeele S, Nelissen H, Inzé D, Tito R, Raes J, De Tender C, Goormachtig S

(2020/04) - Microbiome

DOI
1709. New opportunities and insights into Papaver self-incompatibility by imaging engineered Arabidopsis pollen

Ludi Wang, Marina Triviño, Zongcheng Lin, José Carli, Deborah J Eaves, Daniёl Van Damme, Moritz K Nowack, Vernonica E Franklin-Tong, Maurice Bosch, Zoe Wilson

(2020/04) - Journal of Experimental Botany

DOI
1708. New opportunities and insights into Papaver self-incompatibility by imaging engineered Arabidopsis pollen.

Wang L, Triviño M, Lin Z, Carli J, Eaves DJ, Van Damme D, Nowack MK, Franklin-Tong VE, Bosch M

(2020/04) - Journal of Experimental Botany

DOI
1707. A Seed-Specific Regulator of Triterpene Saponin Biosynthesis in Medicago truncatula.

Ribeiro B, Lacchini E, Bicalho KU, Mertens J, Arendt P, Arendt P, Vanden Bossche R, Calegario G, Gryffroy L, Ceulemans E, Buitink J, Goossens A, Pollier J

(2020/04) - The Plant cell

DOI
1706. RBR-Type E3 Ligases and the Ubiquitin-Conjugating Enzyme UBC26 Regulate Abscisic Acid Receptor Levels and Signaling

Maria Angeles Fernandez, Borja Belda-Palazon, Jose Julian, Alberto Coego, Jorge Lozano-Juste, Sabrina Iñigo, Lesia Rodriguez, Eduardo Bueso, Alain Goossens, Pedro L. Rodriguez

(2020/04) - Plant Physiology

DOI
1705. Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions.

Beirinckx S, Viaene T, Haegeman A, Debode J, Amery F, Vandenabeele S, Nelissen H, Inzé D, Tito R, Raes J, De Tender C, Goormachtig S

(2020/04) - Microbiome

DOI
1704. Modification of the Expression of the Aquaporin ZmPIP2;5 Affects Water Relations and Plant Growth

Lei Ding, Thomas Milhiet, Valentin Couvreur, Hilde Nelissen, Adel Meziane, Boris Parent, Stijn Aesaert, Mieke Van Lijsebettens, Dirk Inzé, François Tardieu, Xavier Draye, François Chaumont

(2020/04) - Plant Physiology

DOI
1703. Using single-plant -omics in the field to link maize genes to functions and phenotypes

Felipe Cruz D, De Meyer S, Ampe J, Sprenger H, Herman D, Van Hautegem T, De Block J, Inzé D, Nelissen H, Maere S

(2020/04) -

DOI
1702. Arabidopsis Lectin EULS3 Is Involved in ABA Signaling in Roots.

Dubiel M, Beeckman T, Smagghe G, Van Damme EJM

(2020/04) - Frontiers in plant science

DOI
1701. Peptide-Receptor Signaling Controls Lateral Root Development

Joris Jourquin, Hidehiro Fukaki, Tom Beeckman

(2020/04) - Plant Physiology

DOI
1700. Exploiting natural variation in root system architecture via genome-wide association studies

Agnieszka Deja-Muylle, Boris Parizot, Hans Motte, Tom Beeckman, Kris Vissenberg

(2020/04) - Journal of Experimental Botany

DOI
1699. Compensatory Guaiacyl Lignin Biosynthesis at the Expense of Syringyl Lignin in 4CL1-Knockout Poplar.

Tsai CJ, Xu P, Xue LJ, Hu H, Nyamdari B, Naran R, Zhou X, Goeminne G, Gao R, Gjersing E, Dahlen J, Pattathil S, Hahn MG, Davis MF, Ralph J, Boerjan W, Harding SA

(2020/03) - Plant physiology

DOI
1698. Functional Divergence of Microtubule-Associated TPX2 Family Members in Arabidopsis thaliana

Eva Dvořák Tomaštíková, Twan Rutten, Petr Dvořák, Alisa Tugai, Klara Ptošková, Beáta Petrovská, Daniel van Damme, Andreas Houben, Jaroslav Doležel, Dmitri Demidov

(2020/03) - International Journal of Molecular Sciences

DOI
1697. How grass keeps growing: an integrated analysis of hormonal crosstalk in the maize leaf growth zone

Dirk De Vos, Hilde Nelissen, Hamada AbdElgawad, Els Prinsen, Jan Broeckhove, Dirk Inzé, Gerrit T. S. Beemster

(2020/03) - New Phytologist

DOI
1696. Standardization of Plant Microbiome Studies: Which Proportion of the Microbiota is Really Harvested?

Abdoul Razack Sare, Gilles Stouvenakers, Mathilde Eck, Amber Lampens, Sofie Goormachtig, M. Haïssam Jijakli, Sebastien Massart

(2020/02) - Microorganisms

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1695. The ArathEULS3 Lectin Ends up in Stress Granules and Can Follow an Unconventional Route for Secretion.

Dubiel M, De Coninck T, Osterne VJS, Verbeke I, Van Damme D, Smagghe G, Van Damme EJM

(2020/02) - International journal of molecular sciences

DOI
1694. Phytohormones: Multifunctional nutraceuticals against metabolic syndrome and comorbid diseases.

Kim SW, Goossens A, Libert C, Van Immerseel F, Staal J, Beyaert R

(2020/02) - Biochemical Pharmacology

DOI
1693. The dynamic nature and regulation of the root clock

Wei Xuan, Hugues De Gernier, Tom Beeckman

(2020/02) - Development

DOI
1692. “Winter Is Coming”: How did Polyploid Plants Survive?

Zhen Li, Yves Van de Peer

(2020/01) - Molecular Plant

DOI
1691. The plant WEE1 kinase is involved in checkpoint control activation in nematode‐induced galls

Danila Cabral, Mohamed Youssef Banora, José Dijair Antonino, Natalia Rodiuc, Paulo Vieira, Roberta R. Coelho, Christian Chevalier, Thomas Eekhout, Gilbert Engler, Lieven De Veylder, Maria Fatima Grossi‐de‐Sa, Janice de Almeida Engler

(2020/01) - New Phytologist

DOI
1690. Molecular Changes Concomitant with Vascular System Development in Mature Galls Induced by Root-Knot Nematodes in the Model Tree Host Populus tremula × P. alba

Fabien Baldacci-Cresp, Marc Behr, Annegret Kohler, Nelly Badalato, Kris Morreel, Geert Goeminne, Adeline Mol, Janice de Almeida Engler, Wout Boerjan, Mondher El Jaziri, Marie Baucher

(2020/01) - International Journal of Molecular Sciences

DOI
1689. ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content.

Gallego-Giraldo L, Liu C, Pose-Albacete S, Pattathil S, Peralta AG, Young J, Westpheling J, Hahn MG, Rao X, Knox JP, De Meester B, Boerjan W, Dixon RA

(2020/01) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1688. Organization and regulation of triterpene saponin biosynthesis in Medicago truncatula

Jan Mertens, Alain Goossens

(2020/01) - The Model Legume Medicago truncatula

DOI
1687. CRISPR-Cas-Mediated Gene Knockout in Tomato.

Swinnen G, Jacobs T, Pauwels L, Goossens A

(2020/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1686. Understanding plant organ growth: a multidisciplinary field.

Nelissen H, Gonzalez N

(2020/01) - Journal of experimental botany

DOI
1685. CRISPR-Cas-Mediated Gene Knockout in Tomato

Gwen Swinnen, Thomas Jacobs, Laurens Pauwels, Alain Goossens

(2020) - Methods in Molecular Biology

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1684. Virus-host coexistence in phytoplankton through the genomic lens

Yau, S., Krasovec, M., Felipe Benites, L., Rombauts, S., Groussin, M., Vancaester, E., Aury, J.-M., Derelle, E., Desdevises, Y., Escande, M.-L., Grimsley, N., Guy, J., Moreau, H., Sanchez-Brosseau, S., van de Peer, Y., Vandepoele, K., Gourbiere, S., Piganeau, G.

(2020) - Science Advances

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1683. The water lily genome and the early evolution of flowering plants

Zhang, L., Chen, F., Zhang, X., Li, Z., Zhao, Y., Lohaus, R., Chang, X., Dong, W., Ho, S.Y.W., Liu, X., Song, A., Chen, J., Guo, W., Wang, Z., Zhuang, Y., Wang, H., Chen, X., Hu, J., Liu, Y., Qin, Y., Wang, K., Dong, S., Liu, Y., Zhang, S., Yu, X., Wu, Q., Wang, L., Yan, X., Jiao, Y., Kong, H., Zhou, X., Yu, C., Chen, Y., Li, F., Wang, J., Chen, W., Chen, X., Jia, Q., Zhang, C., Jiang, Y., Zhang, W., Liu, G., Fu, J., Chen, F., Ma, H., Van de Peer, Y., Tang, H.

(2020) - Nature

DOI
1682. The Litsea genome and the evolution of the laurel family

Chen, Y.-C., Li, Z., Zhao, Y.-X., Gao, M., Wang, J.-Y., Liu, K.-W., Wang, X., Wu, L.-W., Jiao, Y.-L., Xu, Z.-L., He, W.-G., Zhang, Q.-Y., Liang, C.-K., Hsiao, Y.-Y., Zhang, D.-Y., Lan, S.-R., Huang, L., Xu, W., Tsai, W.-C., Liu, Z.-J., Van de Peer, Y., Wang, Y.-D.

(2020) - Nature Communications

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1681. The hornwort genome and early land plant evolution

Zhang, J., Fu, X.-X., Li, R.-Q., Zhao, X., Liu, Y., Li, M.-H., Zwaenepoel, A., Ma, H., Goffinet, B., Guan, Y.-L., Xue, J.-Y., Liao, Y.-Y., Wang, Q.-F., Wang, Q.-H., Wang, J.-Y., Zhang, G.-Q., Wang, Z.-W., Jia, Y., Wang, M.-Z., Dong, S.-S., Yang, J.-F., Jiao, Y.-N., Guo, Y.-L., Kong, H.-Z., Lu, A.-M., Yang, H.-M., Zhang, S.-Z., Van de Peer, Y., Liu, Z.-J., Chen, Z.-D.

(2020) - Nature Plants

DOI
1680. The honeysuckle genome provides insight into the molecular mechanism of carotenoid metabolism underlying dynamic flower coloration

Pu, X., Li, Z., Tian, Y., Gao, R., Hao, L., Hu, Y., He, C., Sun, W., Xu, M., Peters, R.J., Van de Peer, Y., Xu, Z., Song, J.

(2020) - New Phytologist

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1679. The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

Li, L., Wang, S., Wang, H., Sahu, S.K., Marin, B., Li, H., Xu, Y., Liang, H., Li, Z., Cheng, S., Reder, T., Çebi, Z., Wittek, S., Petersen, M., Melkonian, B., Du, H., Yang, H., Wang, J., Wong, G.K.-S., Xu, X., Liu, X., Van de Peer, Y., Melkonian, M., Liu, H.

(2020) - Nature Ecology and Evolution

DOI
1678. The evolutionary origin and domestication history of goldfish (Carassius auratus)

Chen, D., Zhang, Q., Tang, W., Huang, Z., Wang, G., Wang, Y., Shi, J., Xu, H., Lin, L., Li, Z., Chi, W., Huang, L., Xia, J., Zhang, X., Guo, L., Wang, Y., Ma, P., Tang, J., Zhou, G., Liu, M., Liu, F., Hua, X., Wang, B., Shen, Q., Jiang, Q., Lin, J., Chen, X., Wang, H., Dou, M., Liu, L., Pan, H., Qi, Y., Wu, B., Fang, J., Zhou, Y., Cen, W., He, W., Zhang, Q., Xue, T., Lin, G., Zhang, W., Liu, Z., Qu, L., Wang, A., Ye, Q., Chen, J., Zhang, Y., Ming, R., Van Montagu, M., Tang, H., Van De Peero, Y., Chena, Y., Zhang, J.

(2020) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1677. Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants

Wong, G.K.-S., Soltis, D.E., Leebens-Mack, J., Wickett, N.J., Barker, M.S., Van De Peer, Y., Graham, S.W., Melkonian, M.

(2020) - Annual Review of Plant Biology

DOI
1676. Polyploidy: A Biological Force From Cells to Ecosystems

Fox, D.T., Soltis, D.E., Soltis, P.S., Ashman, T.-L., Van de Peer, Y.

(2020) - Trends in Cell Biology

DOI
1675. Multi-proxy analyses of a mid-15th century Middle Iron Age Bantu-speaker palaeo-faecal specimen elucidates the configuration of the 'ancestral' sub-Saharan African intestinal microbiome

Rifkin, R.F., Vikram, S., Ramond, J.-B., Rey-Iglesia, A., Brand, T.B., Porraz, G., Val, A., Hall, G., Woodborne, S., Le Bailly, M., Potgieter, M., Underdown, S.J., Koopman, J.E., Cowan, D.A., Van De Peer, Y., Willerslev, E., Hansen, A.J.

(2020) - Microbiome

DOI
1674. Genome streamlining in a minute herbivore that manipulates its host plant

Greenhalgh, R., Dermauw, W., Glas, J.J., Rombauts, S., Wybouw, N., Thomas, J., Alba, J.M., Pritham, E.J., Legarrea, S., Feyereisen, R., Van de Peer, Y., Van Leeuwen, T., Clark, R.M., Kant, M.R.

(2020) - eLife

DOI
1673. First draft genome assembly of the Argane tree (Argania spinosa)

Khayi, S., Azza, N.E., Gaboun, F., Pirro, S., Badad, O., Claros, M.G., Lightfoot, D.A., Unver, T., Chaouni, B., Merrouch, R., Rahim, B., Essayeh, S., Ganoudi, M., Abdelwahd, R., Diria, G., Mdarhi, M.A., Labhilili, M., Iraqi, D., Mouhaddab, J., Sedrati, H., Memari, M., Hamamouch, N., Alché, J.D., Boukhatem, N., Mrabet, R., Dahan, R., Legssyer, A., Khalfaoui, M., Badraoui, M., Van de Peer, Y., Tatusova, T., El Mousadik, A., Mentag, R., Ghazal, H.

(2020) - F1000Research

DOI
1672. Phages actively challenge niche communities in antarctic soils

Bezuidt, O.K.I., Lebre, P.H., Pierneef, R., León-Sobrino, C., Adriaenssens, E.M., Cowan, D.A., van de Peer, Y., Makhalanyane, T.P.

(2020) - mSystems

DOI
1671. Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants

Shi, T., Rahmani, R.S., Gugger, P.F., Wang, M., Li, H., Zhang, Y., Li, Z., Wang, Q., Van De Peer, Y., Marchal, K., Chen, J.

(2020) - Molecular Biology and Evolution

DOI
1670. Chromosome-level genome assembly of a parent species of widely cultivated azaleas

Yang, F.-S., Nie, S., Liu, H., Shi, T.-L., Tian, X.-C., Zhou, S.-S., Bao, Y.-T., Jia, K.-H., Guo, J.-F., Zhao, W., An, N., Zhang, R.-G., Yun, Q.-Z., Wang, X.-Z., Mannapperuma, C., Porth, I., El-Kassaby, Y.A., Street, N.R., Wang, X.-R., Van de Peer, Y., Mao, J.-F.

(2020) - Nature Communications

DOI
1669. De novo Assembly of Transcriptomes From a B73 Maize Line Introgressed With a QTL for Resistance to Gray Leaf Spot Disease Reveals a Candidate Allele of a Lectin Receptor-Like Kinase

Welgemoed, T., Pierneef, R., Sterck, L., Van de Peer, Y., Swart, V., Scheepers, K.D., Berger, D.K.

(2020) - Frontiers in Plant Science

DOI
1668. Draft genomes of two artocarpus plants, jackfruit (A. heterophyllus) and breadfruit (A. altilis)

Sahu, S.K., Liu, M., Yssel, A., Kariba, R., Muthemba, S., Jiang, S., Song, B., Hendre, P.S., Muchugi, A., Jamnadass, R., Kao, S.-M., Featherston, J., Zerega, N.J.C., Xu, X., Yang, H., Van Deynze, A., Van de Peer, Y., Liu, X., Liu, H.

(2020) - Genes

DOI
1667. Nymphaea colorata (Blue-Petal Water Lily)

Tang, H., Zhang, L., Chen, F., Zhang, X., Chen, F., Ma, H., Van de Peer, Y.

(2020) - Trends in Genetics

DOI
1666. Genomes of early-diverging streptophyte algae shed light on plant terrestrialization

Wang, S., Li, L., Li, H., Sahu, S.K., Wang, H., Xu, Y., Xian, W., Song, B., Liang, H., Cheng, S., Chang, Y., Song, Y., Çebi, Z., Wittek, S., Reder, T., Peterson, M., Yang, H., Wang, J., Melkonian, B., Van de Peer, Y., Xu, X., Wong, G.K.-S., Melkonian, M., Liu, H., Liu, X.

(2020) - Nature Plants

DOI
1665. Multi-faceted analysis provides little evidence for recurrent whole-genome duplications during hexapod evolution

Roelofs, D., Zwaenepoel, A., Sistermans, T., Nap, J., Kampfraath, A.A., Van De Peer, Y., Ellers, J., Kraaijeveld, K.

(2020) - BMC Biology

DOI
1664. Generation of open-source genomics resources for African orphan tree crops by African Orphan Crops Consortium (AOCC), a public-private partnership for promoting food and nutritional security in Africa

Hendre, P.S., Muchugi, A., Chang, Y., Fu, Y., Song, Y., Liu, M., Liao, X., Liu, H., Song, B., Xu, X., Cheng, S., Liu, X., Odney, D.A., Kuan Ho, W., Mayes, S., Muthemba, S., Kariba, R., Featherston, J., Hefer, C., Rees, J., Van De Peer, Y., Van Deynze, A., Jamnadass, R.

(2020) - Acta Horticulturae

DOI
1663. Current status of the multinational Arabidopsis community

Parry, G., Provart, N.J., Brady, S.M., Uzilday, B., Adams, K., Araújo, W., Aubourg, S., Baginsky, S., Bakker, E., Bärenfaller, K., Batley, J., Beale, M., Beilstein, M., Belkhadir, Y., Mendel, G., Berardini, T., Bergelson, J., Blanco-Herrera, F., Brady, S., Braun, H.-P., Briggs, S., Brownfield, L., Cardarelli, M., Castellanos-Uribe, M., Coruzzi, G., Dassanayake, M., De Jaeger, G., Dilkes, B., Doherty, C., Ecker, J., Edger, P., Edwards, D., El Kasmi, F., Eriksson, M., Exposito-Alonso, M., Falter-Braun, P., Fernie, A., Ferro, M., Fiehn, O., Friesner, J., Greenham, K., Guo, Y., Hamann, T., Hancock, A., Hauser, M.-T., Heazlewood, J., Ho, C.-H., Hõrak, H., Huala, E., Hwang, I., Iuchi, S., Jaiswal, P., Jakobson, L., Jiang, Y., Jiao, Y., Jones, A., Kadota, Y., Khurana, J., Kliebenstein, D., Knee, E., Kobayashi, M., Koch, M., Krouk, G., Larson, T., Last, R., Lepiniec, L., Li, S., Lurin, C., Lysak, M., Maere, S., Malinowski, R., Maumus, F., May, S., Mayer, K., Mendoza-Cozatl, D., Mendoza-Poudereux, I., Micol, J.L., Millar, H., Mock, H.-P., Mukhtar, K., Mukhtar, S., Murcha, M., Nakagami, H., Nakamura, Y., Nicolov, L., Nikolau, B., Nowack, M., Nunes-Nesi, A., Palmgren, M., Parry, G., Patron, N., Peck, S., Pedmale, U., Perrot-Rechenmann, C., Pieruschka, R., Pío-Beltrán, J., Pires, J.C., Provart, N., Rajjou, L., Reiser, L., Rhee, S., Rigas, S., Rolland, N., Romanowski, A., Savaldi-Goldstein, S., Schmitz, R., Schulze, W., Seki, M., Shimizu, K.K., Slotkin, K., Small, I., Somers, D., Sozzani, R., Spillane, C., Srinivasan, R., Taylor, N., Tello-Ruiz, M.-K., Thelen, J., Tohge, T., Town, C., Toyoda, T., Uzilday, B., Walley, J., Ware, D., Weckwerth, W., Whitelegge, J., Wienkoop, S., Wright, C., Wrzaczek, M., Yamazaki, M., Yanovsky, M., Žárský, V., Zhong, X., Van De Peer, Y., Van Wijk, K., Von Gillhaussen, P.

(2020) - Plant Direct

DOI
1662. The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots

Jueterbock, A., Boström, C., Coyer, J.A., Olsen, J.L., Kopp, M., Dhanasiri, A.K.S., Smolina, I., Arnaud-Haond, S., Van de Peer, Y., Hoarau, G.

(2020) - Frontiers in Plant Science

DOI
1661. Mitochondrial genes from 18 angiosperms fill sampling gaps for phylogenomic inferences of the early diversification of flowering plants

Xue, J.-Y., Dong, S.-S., Wang, M.-Q., Song, T.-Q., Zhou, G.-C., Li, Z., Van de Peer, Y., Shao, Z.-Q., Wang, W., Chen, M., Zhang, Y.-M., Sun, X.-Q., Chen, H.-F., Zhang, Y.-X., Zhang, S.-Z., Chen, F., Zhang, L.-S., Cox, C., Liu, Y., Wang, Q., Hang, Y.-Y.

(2020) - Journal of Systematics and Evolution

DOI
1660. Molecular priming as an approach to induce tolerance against abiotic and oxidative stresses in crop plants

Kerchev, P., van der Meer, T., Sujeeth, N., Verlee, A., Stevens, C.V., Van Breusegem, F., Gechev, T.

(2020) - Biotechnology Advances

DOI
1659. On the move: redox-dependent protein relocation in plants

Foyer, C.H., Baker, A., Wright, M., Sparkes, I.A., Mhamdi, A., Schippers, J.H.M., Van Breusegem, F.

(2020) - Journal of experimental botany

DOI
1658. Classification and Nomenclature of Metacaspases and Paracaspases: No More Confusion with Caspases

Minina, E.A., Staal, J., Alvarez, V.E., Berges, J.A., Berman-Frank, I., Beyaert, R., Bidle, K.D., Bornancin, F., Casanova, M., Cazzulo, J.J., Choi, C.J., Coll, N.S., Dixit, V.M., Dolinar, M., Fasel, N., Funk, C., Gallois, P., Gevaert, K., Gutierrez-Beltran, E., Hailfinger, S., Klemenčič, M., Koonin, E.V., Krappmann, D., Linusson, A., Machado, M.F.M., Madeo, F., Megeney, L.A., Moschou, P.N., Mottram, J.C., Nyström, T., Osiewacz, H.D., Overall, C.M., Pandey, K.C., Ruland, J., Salvesen, G.S., Shi, Y., Smertenko, A., Stael, S., Ståhlberg, J., Suárez, M.F., Thome, M., Tuominen, H., Van Breusegem, F., van der Hoorn, R.A.L., Vardi, A., Zhivotovsky, B., Lam, E., Bozhkov, P.V.

(2020) - Molecular Cell

DOI
1657. CRISPR-TSKO: A Technique for Efficient Mutagenesis in Specific Cell Types, Tissues, or Organs in Arabidopsis

Ward Decaestecker, Rafael Andrade Buono, Marie L. Pfeiffer, Nick Vangheluwe, Joris Jourquin, Mansour Karimi, Gert Van Isterdael, Tom Beeckman, Moritz K. Nowack, Thomas B. Jacobs

(2019/12) - The Plant Cell

DOI
1656. Evolution of vascular plants through redeployment of ancient developmental regulators.

Lu KJ, van 't Wout Hofland N, Mor E, Mutte S, Abrahams P, Kato H, Vandepoele K, Weijers D, De Rybel B

(2019/12) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1655. Dual RNA Sequencing of Vitis vinifera during Lasiodiplodia theobromae Infection Unveils Host–Pathogen Interactions

Micael Gonçalves, Rui Nunes, Laurentijn Tilleman, Yves Van de Peer, Dieter Deforce, Filip Van Nieuwerburgh, Ana Esteves, Artur Alves

(2019/12) - International Journal of Molecular Sciences

DOI
1654. CRISPR-TSKO: A Technique for Efficient Mutagenesis in Specific Cell Types, Tissues, or Organs in Arabidopsis

Ward Decaestecker, Rafael Andrade Buono, Marie L. Pfeiffer, Nick Vangheluwe, Joris Jourquin, Mansour Karimi, Gert Van Isterdael, Tom Beeckman, Moritz K. Nowack, Thomas B. Jacobs

(2019/12) - The Plant Cell

DOI
1653. TPLATE Recruitment Reveals Endocytic Dynamics at Sites of Symbiotic Interface Assembly in Arbuscular Mycorrhizal Interactions.

Russo G, Carotenuto G, Fiorilli V, Volpe V, Faccio A, Bonfante P, Chabaud M, Chiapello M, Van Damme D, Genre A

(2019/12) - Frontiers in plant science

DOI
1652. Regulatory Oxylipins Anno 2019: Jasmonates Galore in the Plant Oxylipin Research Community.

Goossens A, Farmer EE

(2019/12) - Plant & cell physiology

DOI
1651. CRISPR-TSKO: A Technique for Efficient Mutagenesis in Specific Cell Types, Tissues, or Organs in Arabidopsis

Ward Decaestecker, Rafael Andrade Buono, Marie L. Pfeiffer, Nick Vangheluwe, Joris Jourquin, Mansour Karimi, Gert Van Isterdael, Tom Beeckman, Moritz K. Nowack, Thomas B. Jacobs

(2019/12) - The Plant Cell

DOI
1650. ORCAE-AOCC: A Centralized Portal for the Annotation of African Orphan Crop Genomes

Anna E. J. Yssel, Shu-Min Kao, Yves Van de Peer, Lieven Sterck

(2019/11) - Genes

DOI
1649. cis-Cinnamic acid is a natural plant growth-promoting compound.

Steenackers W, El Houari I, Baekelandt A, Witvrouw K, Dhondt S, Leroux O, Gonzalez N, Corneillie S, Cesarino I, Inzé D, Boerjan W, Vanholme B

(2019/11) - Journal of experimental botany

DOI
1648. PIRIN2 suppresses S-type lignin accumulation in a noncell-autonomous manner in Arabidopsis xylem elements.

Zhang B, Sztojka B, Escamez S, Vanholme R, Hedenström M, Wang Y, Turumtay H, Gorzsás A, Boerjan W, Tuominen H

(2019/11) - The New phytologist

DOI
1647. A metabolomics characterisation of natural variation in the resistance of cassava to whitefly.

Perez-Fons L, Bohorquez-Chaux A, Irigoyen ML, Garceau DC, Morreel K, Boerjan W, Walling LL, Becerra Lopez-Lavalle LA, Fraser PD

(2019/11) - BMC plant biology

DOI
1646. Plant AtEH/Pan1 proteins drive autophagosome formation at ER-PM contact sites with actin and endocytic machinery

Pengwei Wang, Roman Pleskot, Jingze Zang, Joanna Winkler, Jie Wang, Klaas Yperman, Tong Zhang, Kun Wang, Jinli Gong, Yajie Guan, Christine Richardson, Patrick Duckney, Michael Vandorpe, Evelien Mylle, Jindriska Fiserova, Daniel Van Damme, Patrick J. Hussey

(2019/11) - Nature Communications

DOI
1645. CYP712K4 Catalyzes the C-29 Oxidation of Friedelin in the Maytenus ilicifolia Quinone Methide Triterpenoid Biosynthesis Pathway

Keylla U Bicalho, Mariana M Santoni, Philipp Arendt, Cleslei F Zanelli, Maysa Furlan, Alain Goossens, Jacob Pollier

(2019/11) - Plant and Cell Physiology

DOI
1644. The evolutionary trajectory of root stem cells.

Motte H, Parizot B, Fang T, Beeckman T

(2019/11) - Current opinion in plant biology

DOI
1643. Rice microtubule-associated protein IQ67-DOMAIN14 regulates grain shape by modulating microtubule cytoskeleton dynamics.

Yang B, Wendrich JR, De Rybel B, Weijers D, Xue HW

(2019/10) - Plant biotechnology journal

DOI
1642. Editorial: Forest Genomics and Biotechnology.

Allona I, Kirst M, Boerjan W, Strauss S, Sederoff R

(2019/10) - Frontiers in plant science

DOI
1641. Passive membrane transport of lignin-related compounds.

Vermaas JV, Dixon RA, Chen F, Mansfield SD, Boerjan W, Ralph J, Crowley MF, Beckham GT

(2019/10) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1640. Interspecific hybridization facilitates niche adaptation in beer yeast

Brigida Gallone, Jan Steensels, Stijn Mertens, Maria C. Dzialo, Jonathan L. Gordon, Ruben Wauters, Florian A. Theßeling, Francesca Bellinazzo, Veerle Saels, Beatriz Herrera-Malaver, Troels Prahl, Christopher White, Mathias Hutzler, Franz Meußdoerffer, Philippe Malcorps, Ben Souffriau, Luk Daenen, Guy Baele, Steven Maere, Kevin J. Verstrepen

(2019/10) - Nature Ecology & Evolution

DOI
1639. Endoreplication as a potential driver of cell wall modifications

Rahul Bhosale, Steven Maere, Lieven De Veylder

(2019/10) - Current Opinion in Plant Biology

DOI
1638. Non-canonical AUX/IAA protein IAA33 competes with canonical AUX/IAA repressor IAA5 to negatively regulate auxin signaling.

Lv B, Yu Q, Liu J, Wen X, Yan Z, Hu K, Li H, Kong X, Li C, Tian H, De Smet I, Zhang XS, Ding Z

(2019/10) - The EMBO journal

DOI
1637. Watermelons versus Melons: A Matter of Taste.

Vergauwen D, De Smet I

(2019/10) - Trends in plant science

DOI
1636. Developmental Plasticity at High Temperature

Lam Dai Vu, Xiangyu Xu, Kris Gevaert, Ive De Smet

(2019/10) - Plant Physiology

DOI
1635. Lessons from Domestication: Targeting Cis-Regulatory Elements for Crop Improvement.

Swinnen G, Goossens A, Pauwels L

(2019/10) - Trends in plant science

DOI
1634. A MYC2/MYC3/MYC4-dependent transcription factor network regulates water spray-responsive gene expression and jasmonate levels.

Van Moerkercke A, Duncan O, Zander M, Šimura J, Broda M, Vanden Bossche R, Lewsey MG, Lama S, Singh KB, Ljung K, Ecker JR, Goossens A, Millar AH, Van Aken O

(2019/10) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1633. COSY catalyses trans–cis isomerization and lactonization in the biosynthesis of coumarins

Ruben Vanholme, Lisa Sundin, Keletso Carol Seetso, Hoon Kim, Xinyu Liu, Jin Li, Barbara De Meester, Lennart Hoengenaert, Geert Goeminne, Kris Morreel, Jurgen Haustraete, Huei-Hsuan Tsai, Wolfgang Schmidt, Bartel Vanholme, John Ralph, Wout Boerjan

(2019/09) - Nature Plants

DOI
1632. Plant DNA Polymerases

Jose-Antonio Pedroza-Garcia, Lieven De Veylder, Cécile Raynaud

(2019/09) - International Journal of Molecular Sciences

DOI
1631. COSY catalyses trans-cis isomerization and lactonization in the biosynthesis of coumarins.

Vanholme R, Sundin L, Seetso KC, Kim H, Liu X, Li J, De Meester B, Hoengenaert L, Goeminne G, Morreel K, Haustraete J, Tsai HH, Schmidt W, Boerjan W

(2019/09) - Nature plants

DOI
1630. CYP707As are effectors of karrikin and strigolactone signalling pathways in Arabidopsis thaliana and parasitic plants

Guillaume Brun, Séverine Thoiron, Lukas Braem, Jean‐Bernard Pouvreau, Grégory Montiel, Marc‐Marie Lechat, Philippe Simier, Kris Gevaert, Sofie Goormachtig, Philippe Delavault

(2019/09) - Plant, Cell & Environment

DOI
1629. Plant Growth Promotion Driven by a Novel Caulobacter Strain

Dexian Luo, Sarah Langendries, Sonia Garcia Mendez, Joren De Ryck, Derui Liu, Stien Beirinckx, Anne Willems, Eugenia Russinova, Jane Debode, Sofie Goormachtig

(2019/09) - Molecular Plant-Microbe Interactions®

DOI
1628. SPX4 Acts on PHR1-Dependent and -Independent Regulation of Shoot Phosphorus Status in Arabidopsis

Marina Borges Osorio, Sophia Ng, Oliver Berkowitz, Inge De Clercq, Chuanzao Mao, Huixia Shou, James Whelan, Ricarda Jost

(2019/09) - Plant Physiology

DOI
1627. Cytokinin promotes jasmonic acid accumulation in the control of maize leaf growth

Aimee N. Uyehara, Angel R. Del Valle-Echevarria, Charles T. Hunter, Hilde Nelissen, Kirin Demuynck, James F. Cahill, Georg Jander, Michael G. Muszynski

(2019/09) -

DOI
1626. The use of mutants and inhibitors to study sterol biosynthesis in plants

Vriese KD, Pollier J, Goossens A, Beeckman T, Vanneste S

(2019/09) -

DOI
1625. Associated Bacteria Affect Sexual Reproduction by Altering Gene Expression and Metabolic Processes in a Biofilm Inhabiting Diatom.

Cirri E, De Decker S, Bilcke G, Werner M, Osuna-Cruz CM, De Veylder L, Vandepoele K, Werz O, Vyverman W, Pohnert G

(2019/08) - Frontiers in microbiology

DOI
1624. The Plant PTM Viewer, a central resource for exploring plant protein modifications

Patrick Willems, Alison Horne, Thomas Van Parys, Sofie Goormachtig, Ive De Smet, Alexander Botzki, Frank Van Breusegem, Kris Gevaert

(2019/08) - The Plant Journal

DOI
1623. Secondary sulfur metabolism in cellular signalling and oxidative stress responses.

Chan KX, Phua SY, Van Breusegem F

(2019/08) - Journal of experimental botany

DOI
1622. Significant influence of lignin on axial elastic modulus of poplar wood at low microfibril angles under wet conditions.

Özparpucu M, Gierlinger N, Cesarino I, Burgert I, Boerjan W, Rüggeberg M

(2019/08) - Journal of experimental botany

DOI
1621. Certification for gene-edited forests.

Strauss SH, Boerjan W, Chiang V, Costanza A, Coleman H, Davis JM, Lu MZ, Mansfield SD, Merkle S, Myburg A, Nilsson O, Pilate G, Powell W, Seguin A, Valenzuela S

(2019/08) - Science (New York, N.Y.)

DOI
1620. The MYB transcription factor Emission of Methyl Anthranilate 1 stimulates emission of methyl anthranilate from Medicago truncatula hairy roots

Jacob Pollier, Nathan De Geyter, Tessa Moses, Benoît Boachon, José M. Franco‐Zorrilla, Yuechen Bai, Elia Lacchini, Azra Gholami, Robin Vanden Bossche, Danièle Werck‐Reichhart, Sofie Goormachtig, Alain Goossens

(2019/08) - The Plant Journal

DOI
1619. The Plant PTM Viewer, a central resource for exploring plant protein modifications

Patrick Willems, Alison Horne, Thomas Van Parys, Sofie Goormachtig, Ive De Smet, Alexander Botzki, Frank Van Breusegem, Kris Gevaert

(2019/08) - The Plant Journal

DOI
1618. Arabidopsis DGD1 SUPPRESSOR1 Is a Subunit of the Mitochondrial Contact Site and Cristae Organizing System and Affects Mitochondrial Biogenesis

Lu Li, Anastasiya Lavell, Xiangxiang Meng, Oliver Berkowitz, Jennifer Selinski, Allison van de Meene, Chris Carrie, Christoph Benning, James Whelan, Inge De Clercq, Yan Wang

(2019/08) - The Plant Cell

DOI
1617. The Plant PTM Viewer, a central resource for exploring plant protein modifications

Patrick Willems, Alison Horne, Thomas Van Parys, Sofie Goormachtig, Ive De Smet, Alexander Botzki, Frank Van Breusegem, Kris Gevaert

(2019/08) - The Plant Journal

DOI
1616. Phosphorylation‐Mediated Signalling in Plants

Xiangyu Xu, Tingting Zhu, Natalia Nikonorova, Ive De Smet

(2019/08) - Annual Plant Reviews online

DOI
1615. Cadmium stress suppresses lateral root formation by interfering with the root clock.

Xie Y, Wang J, Zheng L, Wang Y, Luo L, Ma M, Zhang C, Han Y, Beeckman T, Xu G, Cai Q, Xuan W

(2019/08) - Plant, cell & environment

DOI
1614. Using digital organisms to study the evolutionary consequences of whole genome duplication and polyploidy

Yao Yao, Marc Robinson-Rechavi, Lorenzo Carretero-Paulet, Yves Van de Peer

(2019/07) - PLOS ONE

DOI
1613. Lignin Engineering in Forest Trees.

Chanoca A, de Vries L, Boerjan W

(2019/07) - Frontiers in plant science

DOI
1612. Jasmonates: what ALLENE OXIDE SYNTHASE does for plants.

Farmer EE, Goossens A

(2019/07) - Journal of experimental botany

DOI
1611. Jasmonate and auxin perception: how plants keep F-boxes in check

Clara Williams, Patricia Fernández-Calvo, Maite Colinas, Laurens Pauwels, Alain Goossens

(2019/07) - Journal of Experimental Botany

DOI
1610. Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth.

Vercruysse J, Van Bel M, Osuna-Cruz CM, Kulkarni SR, Storme V, Nelissen H, Gonzalez N, Inzé D, Vandepoele K

(2019/07) - Plant biotechnology journal

DOI
1609. Genome Editing-Based Engineering of CESA3 Dual Cellulose-Inhibitor-Resistant Plants

Zhubing Hu, Teng Zhang, Debbie Rombaut, Ward Decaestecker, Aiming Xing, Sam D’Haeyer, Rene Höfer, Ilse Vercauteren, Mansour Karimi, Thomas Jacobs, Lieven De Veylder

(2019/06) - Plant Physiology

DOI
1608. The Discovery of Plant D-Type Cyclins

Lieven De Veylder

(2019/06) - The Plant Cell

DOI
1607. Disruption of endocytosis through chemical inhibition of clathrin heavy chain function

Wim Dejonghe, Isha Sharma, Bram Denoo, Steven De Munck, Qing Lu, Kiril Mishev, Haydar Bulut, Evelien Mylle, Riet De Rycke, Mina Vasileva, Daniel V. Savatin, Wim Nerinckx, An Staes, Andrzej Drozdzecki, Dominique Audenaert, Klaas Yperman, Annemieke Madder, Jiří Friml, Daniël Van Damme, Kris Gevaert, Volker Haucke, Savvas N. Savvides, Johan Winne, Eugenia Russinova

(2019/06) - Nature Chemical Biology

DOI
1606. Developmental Programming of Thermonastic Leaf Movement

Young-Joon Park, Hyo-Jun Lee, Kyung-Eun Gil, Jae Young Kim, June-Hee Lee, Hyodong Lee, Hyung-Taeg Cho, Lam Dai Vu, Ive De Smet, Chung-Mo Park

(2019/06) - Plant Physiology

DOI
1605. Endoreplication as a potential driver of cell wall modifications.

Bhosale R, Maere S, De Veylder L

(2019/05) - Current opinion in plant biology

DOI
1604. TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis.

Boruc J, Deng X, Mylle E, Besbrugge N, Van Durme M, Demidov D, Tomaštíková ED, Tan TC, Vandorpe M, Eeckhout D, Beeckman T, Nowack MK, De Jaeger G, Lin H, Liu B, Van Damme D

(2019/05) - Plant Physiology

DOI
1603. Identification of a role for an E6-like 1 gene in early pollen-stigma interactions in Arabidopsis thaliana.

Doucet J, Truong C, Frank-Webb E, Lee HK, Daneva A, Gao Z, Nowack MK, Goring DR

(2019/05) - Plant Reproduction

DOI
1602. TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis.

Boruc J, Deng X, Mylle E, Besbrugge N, Van Durme M, Demidov D, Tomaštíková ED, Tan TC, Vandorpe M, Eeckhout D, Beeckman T, Nowack MK, De Jaeger G, Van Damme D

(2019/05) - Plant physiology

DOI
1601. The MYB transcription factor Emission of Methyl Anthranilate 1 stimulates emission of methyl anthranilate from Medicago truncatula hairy roots.

Pollier J, De Geyter N, Moses T, Boachon B, Franco-Zorrilla JM, Bai Y, Lacchini E, Gholami A, Vanden Bossche R, Werck-Reichhart D, Goormachtig S, Goossens A

(2019/05) - The Plant journal : for cell and molecular biology

DOI
1600. Integrated metabolomics identifies CYP72A67 and CYP72A68 oxidases in the biosynthesis of Medicago truncatula oleanate sapogenins.

Tzin V, Snyder JH, Yang DS, Huhman DV, Watson BS, Allen SN, Tang Y, Miettinen K, Arendt P, Pollier J, Goossens A, Sumner LW

(2019/05) - Metabolomics : Official journal of the Metabolomic Society

DOI
1599. A specialized metabolic network selectively modulates Arabidopsis root microbiota

Ancheng C. Huang, Ting Jiang, Yong-Xin Liu, Yue-Chen Bai, James Reed, Baoyuan Qu, Alain Goossens, Hans-Wilhelm Nützmann, Yang Bai, Anne Osbourn

(2019/05) - Science

DOI
1598. Source-Sink Regulation in Crops under Water Deficit.

Rodrigues J, Inzé D, Nelissen H, Saibo NJM

(2019/05) - Trends in plant science

DOI
1597. TPX2-LIKE PROTEIN3 Is the Primary Activator of α-Aurora Kinases and Is Essential for Embryogenesis.

Boruc J, Deng X, Mylle E, Besbrugge N, Van Durme M, Demidov D, Tomaštíková ED, Tan TC, Vandorpe M, Eeckhout D, Beeckman T, Nowack MK, De Jaeger G, Van Damme D

(2019/05) - Plant physiology

DOI
1596. Identification of Novel Inhibitors of Auxin-Induced Ca2+ Signaling via a Plant-Based Chemical Screen

Kjell De Vriese, Ellie Himschoot, Kai Dünser, Long Nguyen, Andrzej Drozdzecki, Alex Costa, Moritz K. Nowack, Jürgen Kleine-Vehn, Dominique Audenaert, Tom Beeckman, Steffen Vanneste

(2019/05) - Plant Physiology

DOI
1595. Hitting pause on the cell cycle

Thomas Eekhout, Lieven De Veylder

(2019/04) - eLife

DOI
1594. Caught green-handed: methods for in vivo detection and visualization of protease activity

Álvaro Daniel Fernández-Fernández, Renier A L Van der Hoorn, Kris Gevaert, Frank Van Breusegem, Simon Stael

(2019/04) - Journal of Experimental Botany

DOI
1593. Editorial overview: Plant biotechnology - lignin engineering.

Boerjan W, Ralph J

(2019/04) - Current opinion in biotechnology

DOI
1592. Analytical Py-GC/MS of Genetically Modified Poplar for the Increased Production of Bio-aromatics.

SriBala G, Toraman HE, Symoens S, Déjardin A, Pilate G, Boerjan W, Ronsse F, Van Geem KM, Marin GB

(2019/04) - Computational and structural biotechnology journal

DOI
1591. Plant proteases and programmed cell death

Simon Stael, Frank Van Breusegem, Kris Gevaert, Moritz K Nowack

(2019/04) - Journal of Experimental Botany

DOI
1590. Plant proteases during developmental programmed cell death

Rafael Andrade Buono, Roman Hudecek, Moritz K Nowack

(2019/04) - Journal of Experimental Botany

DOI
1589. EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation.

Ramakrishna P, Ruiz Duarte P, Rance GA, Schubert M, Vordermaier V, Vu LD, Murphy E, Vilches Barro A, Swarup K, Moirangthem K, Jørgensen B, De Smet I

(2019/04) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1588. Unravelling the genetic basis of Fusarium seedling rot resistance in the MAGIC maize population: novel targets for breeding.

Septiani P, Lanubile A, Stagnati L, Busconi M, Nelissen H, Pè ME, Dell'Acqua M, Marocco A

(2019/04) - Scientific reports

DOI
1587. EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation

Priya Ramakrishna, Paola Ruiz Duarte, Graham A. Rance, Martin Schubert, Vera Vordermaier, Lam Dai Vu, Evan Murphy, Amaya Vilches Barro, Kamal Swarup, Kamaljit Moirangthem, Bodil Jørgensen, Brigitte van de Cotte, Tatsuaki Goh, Zhefeng Lin, Ute Voβ, Tom Beeckman, Malcolm J. Bennett, Kris Gevaert, Alexis Maizel, Ive De Smet

(2019/04) - Proceedings of the National Academy of Sciences

DOI
1586. Genome Editing-Based Engineering of CESA3 Dual Cellulose-Inhibitor-Resistant Plants.

Hu Z, Zhang T, Rombaut D, Decaestecker W, Xing A, D'Haeyer S, Höfer R, Vercauteren I, Karimi M, Jacobs T, De Veylder L

(2019/03) - Plant physiology

DOI
1585. Lignin biosynthesis and its integration into metabolism.

Vanholme R, De Meester B, Ralph J, Boerjan W

(2019/03) - Current opinion in biotechnology

DOI
1584. Lignin structure and its engineering.

Ralph J, Lapierre C, Boerjan W

(2019/03) - Current opinion in biotechnology

DOI
1583. ANAC017 Coordinates Organellar Functions and Stress Responses by Reprogramming Retrograde Signaling.

Meng X, Li L, De Clercq I, Narsai R, Xu Y, Hartmann A, Claros DL, Custovic E, Lewsey MG, Whelan J, Berkowitz O

(2019/03) - Plant Physiology

DOI
1582. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase.

Van Leene J, Han C, Gadeyne A, Eeckhout D, Matthijs C, Cannoot B, De Winne N, Persiau G, Van De Slijke E, Van de Cotte B, Stes E, Van Bel M, De Jaeger G

(2019/03) - Nature plants

DOI
1581. Metabolic editing: small measures, great impact.

Swinnen G, Goossens A, Colinas M

(2019/03) - Current opinion in biotechnology

DOI
1580. Molecular and Environmental Regulation of Root Development.

Motte H, Vanneste S, Beeckman T

(2019/03) - Annual review of plant biology

DOI
1579. Tackling Plant Phosphate Starvation by the Roots.

Crombez H, Motte H, Beeckman T

(2019/03) - Developmental cell

DOI
1578. DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW

Wouter Smet, Iris Sevilem, Maria Angels de Luis Balaguer, Brecht Wybouw, Eliana Mor, Shunsuke Miyashima, Bernhard Blob, Pawel Roszak, Thomas B. Jacobs, Mark Boekschoten, Guido Hooiveld, Rosangela Sozzani, Ykä Helariutta, Bert De Rybel

(2019/02) - Current Biology

DOI
1577. Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

Alexey Shapiguzov, Julia P Vainonen, Kerri Hunter, Helena Tossavainen, Arjun Tiwari, Sari Järvi, Maarit Hellman, Fayezeh Aarabi, Saleh Alseekh, Brecht Wybouw, Katrien Van Der Kelen, Lauri Nikkanen, Julia Krasensky-Wrzaczek, Nina Sipari, Markku Keinänen, Esa Tyystjärvi, Eevi Rintamäki, Bert De Rybel, Jarkko Salojärvi, Frank Van Breusegem, Alisdair R Fernie, Mikael Brosché, Perttu Permi, Eva-Mari Aro, Michael Wrzaczek, Jaakko Kangasjärvi

(2019/02) - eLife

DOI
1576. In vivo detection of protein cysteine sulfenylation in plastids

Barbara De Smet, Patrick Willems, Alvaro D. Fernandez‐Fernandez, Saleh Alseekh, Alisdair R. Fernie, Joris Messens, Frank Van Breusegem

(2019/02) - The Plant Journal

DOI
1575. Design and visualization of second-generation cyanoisoindole-based fluorescent strigolactone analogs.

Van Overtveldt M, Braem L, Struk S, Kaczmarek AM, Boyer FD, Van Deun R, Gevaert K, Goormachtig S, Heugebaert TSA, Stevens CV

(2019/02) - The Plant Journal

DOI
1574. Unraveling new molecular players involved in the autoregulation of nodulation in Medicago truncatula

Pierre Gautrat, Virginie Mortier, Carole Laffont, Annick De Keyser, Justine Fromentin, Florian Frugier, Sofie Goormachtig

(2019/02) - Journal of Experimental Botany

DOI
1573. Exploring the protein–protein interaction landscape in plants

Sylwia Struk, Anse Jacobs, Elena Sánchez Martín‐Fontecha, Kris Gevaert, Pilar Cubas, Sofie Goormachtig

(2019/02) - Plant, Cell & Environment

DOI
1572. Identification of novel inhibitors of auxin-induced Ca2+ signaling via a plant-based chemical screen.

De Vriese K, Himschoot E, Dunser K, Nguyen L, Drozdzecki A, Costa A, Nowack MK, Kleine-Vehn J, Audenaert D, Beeckman T, Vanneste S

(2019/02) - Plant physiology

DOI
1571. The Root Cap Cuticle: A Cell Wall Structure for Seedling Establishment and Lateral Root Formation.

Berhin A, de Bellis D, Franke RB, Buono RA, Nowack MK, Nawrath C

(2019/02) - Cell

DOI
1570. Root Branching Is Not Induced by Auxins in Selaginella moellendorffii.

Fang T, Motte H, Parizot B, Beeckman T

(2019/02) - Frontiers in plant science

DOI
1569. The evolution of root branching: increasing the level of plasticity

Hans Motte, Tom Beeckman

(2019/02) - Journal of Experimental Botany

DOI
1568. Mobile PEAR transcription factors integrate positional cues to prime cambial growth

Shunsuke Miyashima, Pawel Roszak, Iris Sevilem, Koichi Toyokura, Bernhard Blob, Jung-ok Heo, Nathan Mellor, Hanna Help-Rinta-Rahko, Sofia Otero, Wouter Smet, Mark Boekschoten, Guido Hooiveld, Kayo Hashimoto, Ondřej Smetana, Riccardo Siligato, Eva-Sophie Wallner, Ari Pekka Mähönen, Yuki Kondo, Charles W. Melnyk, Thomas Greb, Keiji Nakajima, Rosangela Sozzani, Anthony Bishopp, Bert De Rybel, Ykä Helariutta

(2019/01) - Nature

DOI
1567. DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW.

Smet W, Sevilem I, de Luis Balaguer MA, Wybouw B, Mor E, Miyashima S, Blob B, Roszak P, Jacobs TB, Boekschoten M, Hooiveld G, Sozzani R, Helariutta Y, De Rybel B

(2019/01) - Current biology : CB

DOI
1566. Introducing curcumin biosynthesis in Arabidopsis enhances lignocellulosic biomass processing.

Oyarce P, De Meester B, Fonseca F, de Vries L, Goeminne G, Pallidis A, De Rycke R, Tsuji Y, Li Y, Van den Bosch S, Sels B, Ralph J, Vanholme R, Boerjan W

(2019/01) - Nature plants

DOI
1565. Mitochondrial function modulates touch signalling in Arabidopsis thaliana.

Xu Y, Berkowitz O, Narsai R, De Clercq I, Hooi M, Vincent B, Van Breusegem F, Whelan J, Wang Y

(2019/01) - The Plant Journal

DOI
1564. Ectopic activation of cortical cell division during the accommodation of arbuscular mycorrhizal fungi

Giulia Russo, Gennaro Carotenuto, Valentina Fiorilli, Veronica Volpe, Marco Chiapello, Daniel Van Damme, Andrea Genre

(2019/01) - New Phytologist

DOI
1563. Functional analysis of Arabidopsis and maize transgenic lines overexpressing the ADP-ribose/NADH pyrophosphohydrolase, AtNUDX7.

Njuguna E, Coussens G, Neyt P, Aesaert S, Storme V, Demuynck K, Vanhaeren H, Dhondt S, Van Haver Y, Paul L, Inzé D, Nelissen H, Van Lijsebettens M

(2019/01) - The International journal of developmental biology

DOI
1562. Unraveling a Local Inhibitory Mechanism Safeguarding Regular Lateral Root Spacing.

De Gernier H, Beeckman T

(2019/01) - Developmental cell

DOI
1561. Auxin Function in the Brown Alga Dictyota dichotoma

Kenny A. Bogaert, Lander Blommaert, Karin Ljung, Tom Beeckman, Olivier De Clerck

(2019/01) - Plant Physiology

DOI
1560. Small RNA profiling in Pinus pinaster reveals the transcriptome of developing seeds and highlights differences between zygotic and somatic embryos

Rodrigues, A.S., Chaves, I., Costa, B.V., Lin, Y.-C., Lopes, S., Milhinhos, A., Van de Peer, Y., Miguel, C.M.

(2019) - Scientific Reports

DOI
1559. Pseudo-chromosome-length genome assembly of a double haploid "bartlett" pear (Pyrus communis L.)

Linsmith, G., Rombauts, S., Montanari, S., Deng, C.H., Celton, J.-M., Guérif, P., Liu, C., Lohaus, R., Zurn, J.D., Cestaro, A., Bassil, N.V., Bakker, L.V., Schijlen, E., Gardiner, S.E., Lespinasse, Y., Durel, C.-E., Velasco, R., Neale, D.B., Chagné, D., Van De Peer, Y., Troggio, M., Bianco, L.

(2019) - GigaScience

DOI
1558. The Evolution of Gene Duplicates in Angiosperms and the Impact of Protein-Protein Interactions and the Mechanism of Duplication

Defoort, J., Van De Peer, Y., Carretero-Paulet, L., Golding, B.

(2019) - Genome Biology and Evolution

DOI
1557. Multiple Independent Recruitment of Sodefrin Precursor-Like Factors in Anuran Sexually Dimorphic Glands

Bossuyt, F., Schulte, L.M., Maex, M., Janssenswillen, S., Novikova, P.Y., Biju, S.D., Van De Peer, Y., Matthijs, S., Roelants, K., Martel, A., Van Bocxlaer, I., Ruvinsky, I.

(2019) - Molecular Biology and Evolution

DOI
1556. Mining the enriched subgraphs for specific vertices in a biological graph

Meysman, P., Saeys, Y., Sabaghian, E., Bittremieux, W., Van De Peer, Y., Goethals, B., Laukens, K.

(2019) - IEEE/ACM Transactions on Computational Biology and Bioinformatics

DOI
1555. Inference of ancient whole-genome duplications and the evolution of gene duplication and loss rates

Zwaenepoel, A., Van De Peer, Y.

(2019) - Molecular Biology and Evolution

DOI
1554. Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

Heydari, M., Miclotte, G., Van De Peer, Y., Fostier, J.

(2019) - BMC Bioinformatics

DOI
1553. Genome sequence of Malania oleifera, a tree with great value for nervonic acid production

Xu, C.-Q., Liu, H., Zhou, S.-S., Zhang, D.-X., Zhao, W., Wang, S., Chen, F., Sun, Y.-Q., Nie, S., Jia, K.-H., Jiao, S.-Q., Zhang, R.-G., Yun, Q.-Z., Guan, W., Wang, X., Gao, Q., Bennetzen, J.L., Maghuly, F., Porth, I., Van de Peer, Y., Wang, X.-R., Ma, Y., Mao, J.-F.

(2019) - GigaScience

DOI
1552. Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude

Zhang, T., Qiao, Q., Novikova, P.Yu., Wang, Q., Yue, J., Guan, Y., Ming, S., Liu, T., De, J., Liu, Y., Al-Shehbaz, I.A., Sun, H., Van Montagu, M., Huang, J., Van de Peer, Y., Qiong, L.

(2019) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1551. Finding Evidence for Whole Genome Duplications: A Reappraisal

Zwaenepoel, A., Li, Z., Lohaus, R., Van de Peer, Y.

(2019) - Molecular Plant

DOI
1550. A genomic analysis and transcriptomic atlas of gene expression in Psoroptes ovis reveals feeding- And stage-specific patterns of allergen expression

Burgess, S.T.G., Marr, E.J., Bartley, K., Nunn, F.G., Down, R.E., Weaver, R.J., Prickett, J.C., Dunn, J., Rombauts, S., Van Leeuwen, T., Van De Peer, Y., Nisbet, A.J.

(2019) - BMC Genomics

DOI
1549. Loss of Wood Formation Genes in Monocot Genomes

Roodt, D., Li, Z., Van De Peer, Y., Mizrachi, E., Gaut, B.

(2019) - Genome Biology and Evolution

DOI
1548. Wgd-simple command line tools for the analysis of ancient whole-genome duplications

Zwaenepoel, A., Van De Peer, Y.

(2019) - Bioinformatics

DOI
1547. Draft genome assembly of the false spider mite brevipalpus yothersi

Navia, D., Novelli, V.M., Rombauts, S., Freitas-Astúa, J., De Mendonça, R.S., Nunes, M.A., Machado, M.A., Lin, Y.-C., Le, P., Zhang, Z., Grbić, M., Wybouw, N., Breeuwer, J.A.J., Van Leeuwen, T., Van de Peer, Y.

(2019) - Microbiology Resource Announcements

DOI
1546. Optimising orbit counting of arbitrary order by equation selection

Melckenbeeck, I., Audenaert, P., Van Parys, T., Van De Peer, Y., Colle, D., Pickavet, M.

(2019) - BMC Bioinformatics

DOI
1545. Applications of Next-Generation Sequencing Technologies and Computational Tools in Molecular Evolution and Aquatic Animals Conservation Studies: A Short Review

Tan, M.P., Wong, L.L., Razali, S.A., Afiqah-Aleng, N., Mohd Nor, S.A., Sung, Y.Y., Van de Peer, Y., Sorgeloos, P., Danish-Daniel, M.

(2019) - Evolutionary Bioinformatics

DOI
1544. A multi-omics analysis of the grapevine pathogen Lasiodiplodia theobromae reveals that temperature affects the expression of virulence- and pathogenicity-related genes

Félix, C., Meneses, R., Gonçalves, M.F.M., Tilleman, L., Duarte, A.S., Jorrín-Novo, J.V., Van de Peer, Y., Deforce, D., Van Nieuwerburgh, F., Esteves, A.C., Alves, A.

(2019) - Scientific Reports

DOI
1543. Arabidopsis RCD1 coordinates chloroplast and mitochondrial functions through interaction with ANAC transcription factors

Shapiguzov, A., Vainonen, J.P., Hunter, K., Tossavainen, H., Tiwari, A., Järvi, S., Hellman, M., Aarabi, F., Alseekh, S., Wybouw, B., van der Kelen, K., Nikkanen, L., Krasensky-Wrzaczek, J., Sipari, N., Keinänen, M., Tyystjärvi, E., Rintamäki, E., De Rybel, B., Salojärvi, J., van Breusegem, F., Fernie, A.R., Brosché, M., Permi, P., Aro, E.-M., Wrzaczek, M., Kangasjärvi, J.

(2019) - eLife

DOI
1542. Extracellular peptide Kratos restricts cell death during vascular development and stress in Arabidopsis

Escamez, S., Stael, S., Vainonen, J.P., Willems, P., Jin, H., Kimura, S., Van Breusegem, F., Gevaert, K., Wrzaczek, M., Tuominen, H.

(2019) - Journal of Experimental Botany

DOI
1541. Gold and Palladium Mediated Bimetallic Catalysis: Mechanistic Investigation through the Isolation of the Organogold(I) Intermediates

Verlee, A., Heugebaert, T., Van Der Meer, T., Kerchev, P., Van Hecke, K., Van Breusegem, F., Stevens, C.V.

(2019) - ACS Catalysis

DOI
1540. Bifunctional chloroplastic DJ-1B from arabidopsis thaliana is an oxidation-robust holdase and a glyoxalase sensitive to H2 O2

Lewandowska, A., Vo, T.N., Nguyen, T.-D.H., Wahni, K., Vertommen, D., Van Breusegem, F., Young, D., Messens, J.

(2019) - Antioxidants

DOI
1539. Mining for protein S-sulfenylation in Arabidopsis uncovers redox-sensitive sites

Huang, J., Willems, P., Wei, B., Tian, C., Ferreira, R.B., Bodra, N., Martínez Gache, S.A., Wahni, K., Liu, K., Vertommen, D., Gevaert, K., Carroll, K.S., Van Montagu, M., Yang, J., Van Breusegem, F., Messens, J.

(2019) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1538. Mitochondrial function modulates touch signalling in Arabidopsis thaliana

Xu, Y., Berkowitz, O., Narsai, R., De Clercq, I., Hooi, M., Bulone, V., Van Breusegem, F., Whelan, J., Wang, Y.

(2019) - Plant Journal

DOI
1537. Plant proteases and programmed cell death

Stael, S., Van Breusegem, F., Gevaert, K., Nowack, M.K.

(2019) - Journal of Experimental Botany

DOI
1536. Damage on plants activates Ca ²⁺ -dependent metacaspases for release of immunomodulatory peptides

Hander, T., Fernández-Fernández, Á.D., Kumpf, R.P., Willems, P., Schatowitz, H., Rombaut, D., Staes, A., Nolf, J., Pottie, R., Yao, P., Gonçalves, A., Pavie, B., Boller, T., Gevaert, K., Van Breusegem, F., Bartels, S., Stael, S.

(2019) - Science

DOI
1535. MEDIATOR18 influences Arabidopsis root architecture, represses auxin signaling and is a critical factor for cell viability in root meristems.

Raya-González J, Oropeza-Aburto A, López-Bucio JS, Guevara-García ÁA, de Veylder L, López-Bucio J, Herrera-Estrella L

(2018/12) - The Plant journal : for cell and molecular biology

DOI
1534. Bioactivity: phenylpropanoids' best kept secret.

Vanholme B, El Houari I, Boerjan W

(2018/12) - Current opinion in biotechnology

DOI
1533. Look Closely, the Beautiful May Be Small: Precursor-Derived Peptides in Plants.

Olsson V, Joos L, Zhu S, Gevaert K, Butenko MA, De Smet I

(2018/12) - Annual review of plant biology

DOI
1532. Feeling the Heat: Searching for Plant Thermosensors.

Vu LD, Gevaert K, De Smet I

(2018/12) - Trends in plant science

DOI
1531. A user-friendly platform for yeast two-hybrid library screening using next generation sequencing

Marie-Laure Erffelinck, Alan M. Moses, Bianca Ribeiro, Maria Perassolo, Laurens Pauwels, Jacob Pollier, Veronique Storme, Alain Goossens

(2018/12) - PLOS ONE

DOI
1530. POLAR-guided signalling complex assembly and localization drive asymmetric cell division

Anaxi Houbaert, Cheng Zhang, Manish Tiwari, Kun Wang, Alberto de Marcos Serrano, Daniel V. Savatin, Mounashree J. Urs, Miroslava K. Zhiponova, Gustavo E. Gudesblat, Isabelle Vanhoutte, Dominique Eeckhout, Sjef Boeren, Mansour Karimi, Camilla Betti, Thomas Jacobs, Carmen Fenoll, Montaña Mena, Sacco de Vries, Geert De Jaeger, Eugenia Russinova

(2018/11) - Nature

DOI
1529. Cytokinin - A Developing Story.

Wybouw B, De Rybel B

(2018/11) - Trends in plant science

DOI
1528. Size does matter

Yves Van de Peer

(2018/11) - Nature Plants

DOI
1527. Transcriptional networks orchestrating programmed cell death during plant development.

Cubría-Radío M, Nowack MK

(2018/11) - Current topics in developmental biology

DOI
1526. Self-incompatibility in Papaver Pollen: Programmed Cell Death in an Acidic Environment.

Wang L, Lin Z, Triviño M, Nowack MK, Franklin-Tong VE, Bosch M

(2018/11) - Journal of Experimental Botany

DOI
1525. The Strawberry Tales: Size Matters.

Vergauwen D, De Smet I

(2018/11) - Trends in plant science

DOI
1524. A widespread alternative squalene epoxidase participates in eukaryote steroid biosynthesis

Jacob Pollier, Emmelien Vancaester, Unnikrishnan Kuzhiumparambil, Claudia E. Vickers, Klaas Vandepoele, Alain Goossens, Michele Fabris

(2018/11) - Nature Microbiology

DOI
1523. RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family.

Daly P, McClellan C, Maluk M, Oakey H, Lapierre C, Waugh R, Stephens J, Marshall D, Barakate A, Tsuji Y, Goeminne G, Vanholme R, Boerjan W, Ralph J, Halpin C

(2018/10) - Plant biotechnology journal

DOI
1522. Polyploidy Affects Plant Growth and Alters Cell Wall Composition.

Corneillie S, De Storme N, Van Acker R, Fangel JU, De Bruyne M, De Rycke R, Geelen D, Willats WGT, Vanholme B, Boerjan W

(2018/10) - Plant physiology

DOI
1521. Peanut Stunt Virus and Its Satellite RNA Trigger Changes in Phosphorylation in N. benthamiana Infected Plants at the Early Stage of the Infection.

Wrzesińska B, Dai Vu L, Gevaert K, De Smet I, Obrępalska-Stęplowska A

(2018/10) - International journal of molecular sciences

DOI
1520. A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation

Rahul Bhosale, Veronique Boudolf, Fabiola Cuevas, Ran Lu, Thomas Eekhout, Zhubing Hu, Gert Van Isterdael, Georgina M. Lambert, Fan Xu, Moritz K. Nowack, Richard S. Smith, Ilse Vercauteren, Riet De Rycke, Veronique Storme, Tom Beeckman, John C. Larkin, Anna Kremer, Herman Höfte, David W. Galbraith, Robert P. Kumpf, Steven Maere, Lieven De Veylder

(2018/10) - The Plant Cell

DOI
1519. The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water

Beata Orman-Ligeza, Emily C. Morris, Boris Parizot, Tristan Lavigne, Aurelie Babé, Aleksander Ligeza, Stephanie Klein, Craig Sturrock, Wei Xuan, Ondřey Novák, Karin Ljung, Maria A. Fernandez, Pedro L. Rodriguez, Ian C. Dodd, Ive De Smet, Francois Chaumont, Henri Batoko, Claire Périlleux, Jonathan P. Lynch, Malcolm J. Bennett, Tom Beeckman, Xavier Draye

(2018/10) - Current Biology

DOI
1518. Network Modeling Unravels Mechanisms of Crosstalk between Ethylene and Salicylate Signaling in Potato

Živa Ramšak, Anna Coll, Tjaša Stare, Oren Tzfadia, Špela Baebler, Yves Van de Peer, Kristina Gruden

(2018/09) - Plant Physiology

DOI
1517. Multiple mechanisms explain how reduced KRP expression increases leaf size of Arabidopsis thaliana.

Sizani BL, Kalve S, Markakis MN, Domagalska MA, Stelmaszewska J, AbdElgawad H, Zhao X, De Veylder L, De Vos D, Broeckhove J, Schnittger A, Beemster GTS

(2018/09) - The New phytologist

DOI
1516. Stacking of a low-lignin trait with an increased guaiacyl and 5-hydroxyguaiacyl unit trait leads to additive and synergistic effects on saccharification efficiency in Arabidopsis thaliana.

de Vries L, Vanholme R, Van Acker R, De Meester B, Sundin L, Boerjan W

(2018/09) - Biotechnology for biofuels

DOI
1515. Meeting report – Cellular gateways: expanding the role of endocytosis in plant development

Xingyun Qi, Roman Pleskot, Niloufer G. Irani, Daniël Van Damme

(2018/09) - Journal of Cell Science

DOI
1514. Protein Language: Post-Translational Modifications Talking to Each Other.

Vu LD, Gevaert K, De Smet I

(2018/09) - Trends in plant science

DOI
1513. The Plant PTM Viewer, a central resource exploring plant protein modifications. From site-seeing to protein function

Patrick Willems, Alison Horne, Sofie Goormachtig, Ive De Smet, Alexander Botzki, Frank Van Breusegem, Kris Gevaert

(2018/09) -

DOI
1512. Arabidopsis Leaf Flatness Is Regulated by PPD2 and NINJA through Repression of CYCLIN D3 Genes

Alexandra Baekelandt, Laurens Pauwels, Zhibiao Wang, Na Li, Liesbeth De Milde, Annelore Natran, Mattias Vermeersch, Yunhai Li, Alain Goossens, Dirk Inzé, Nathalie Gonzalez

(2018/09) - Plant Physiology

DOI
1511. A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation.

Bhosale R, Boudolf V, Cuevas F, Lu R, Eekhout T, Hu Z, Van Isterdael G, Lambert GM, Xu F, Nowack MK, Smith RS, Vercauteren I, De Rycke R, Storme V, De Veylder L

(2018/08) - The Plant cell

DOI
1510. Reactive oxygen species in plant development

Amna Mhamdi, Frank Van Breusegem

(2018/08) - Development

DOI
1509. Elucidating Tricin-Lignin Structures: Assigning Correlations in HSQC Spectra of Monocot Lignins

Wu Lan, Fengxia Yue, Jorge Rencoret, José del Río, Wout Boerjan, Fachuang Lu, John Ralph

(2018/08) - Polymers

DOI
1508. A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation

Rahul Bhosale, Veronique Boudolf, Fabiola Cuevas, Ran Lu, Thomas Eekhout, Zhubing Hu, Gert Van Isterdael, Georgina M. Lambert, Fan Xu, Moritz K. Nowack, Richard S. Smith, Ilse Vercauteren, Riet De Rycke, Veronique Storme, Tom Beeckman, John C. Larkin, Anna Kremer, Herman Höfte, David W. Galbraith, Robert P. Kumpf, Steven Maere, Lieven De Veylder

(2018/08) - The Plant Cell

DOI
1507. NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root Cap.

Huysmans M, Buono RA, Skorzinski N, Radio MC, De Winter F, Parizot B, Mertens J, Karimi M, Fendrych M, Nowack MK

(2018/08) - The Plant cell

DOI
1506. A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation.

Bhosale R, Boudolf V, Cuevas F, Lu R, Eekhout T, Hu Z, Van Isterdael G, Lambert GM, Xu F, Nowack MK, Smith RS, Vercauteren I, De Rycke R, Storme V, De Veylder L

(2018/08) - The Plant cell

DOI
1505. Temperature-induced changes in the wheat phosphoproteome reveal temperature-regulated interconversion of phosphoforms.

Vu LD, Zhu T, Verstraeten I, van de Cotte B, International Wheat Genome Sequencing Consortium, Gevaert K, De Smet I

(2018/08) - Journal of experimental botany

DOI
1504. Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome reveal growth regulators

Natalia Nikonorova, Lisa Van den Broeck, Shanshuo Zhu, Brigitte van de Cotte, Marieke Dubois, Kris Gevaert, Dirk Inzé, Ive De Smet

(2018/08) - Journal of Experimental Botany

DOI
1503. A Dual sgRNA Approach for Functional Genomics inArabidopsis thaliana

Laurens Pauwels, Rebecca De Clercq, Jonas Goossens, Sabrina Iñigo, Clara Williams, Mily Ron, Anne Britt, Alain Goossens

(2018/08) - G3 Genes|Genomes|Genetics

DOI
1502. Author Correction: Diffusible repression of cytokinin signalling produces endodermal symmetry and passage cells.

Andersen TG, Naseer S, Ursache R, Wybouw B, Smet W, De Rybel B, Vermeer JEM, Geldner N

(2018/07) - Nature

DOI
1501. Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

Jonas Defoort, Yves Van de Peer, Vanessa Vermeirssen

(2018/07) - Nucleic Acids Research

DOI
1500. Reactive oxygen species are crucial “pro-life “survival signals in plants

Frank Van Breusegem, Christine H. Foyer, Giovanni E. Mann

(2018/07) - Free Radical Biology and Medicine

DOI
1499. Fern genomes elucidate land plant evolution and cyanobacterial symbioses

Fay-Wei Li, Paul Brouwer, Lorenzo Carretero-Paulet, Shifeng Cheng, Jan de Vries, Pierre-Marc Delaux, Ariana Eily, Nils Koppers, Li-Yaung Kuo, Zheng Li, Mathew Simenc, Ian Small, Eric Wafula, Stephany Angarita, Michael S. Barker, Andrea Bräutigam, Claude dePamphilis, Sven Gould, Prashant S. Hosmani, Yao-Moan Huang, Bruno Huettel, Yoichiro Kato, Xin Liu, Steven Maere, Rose McDowell, Lukas A. Mueller, Klaas G. J. Nierop, Stefan A. Rensing, Tanner Robison, Carl J. Rothfels, Erin M. Sigel, Yue Song, Prakash R. Timilsena, Yves Van de Peer, Hongli Wang, Per K. I. Wilhelmsson, Paul G. Wolf, Xun Xu, Joshua P. Der, Henriette Schluepmann, Gane K.-S. Wong, Kathleen M. Pryer

(2018/07) - Nature Plants

DOI
1498. Dual localized kinesin-12 POK2 plays multiple roles during cell division and interacts with MAP65-3.

Herrmann A, Herrmann A, Livanos P, Lipka E, Gadeyne A, Hauser MT, Van Damme D, Müller S

(2018/07) - EMBO reports

DOI
1497. Receptor Kinase THESEUS1 Is a Rapid Alkalinization Factor 34 Receptor in Arabidopsis.

Gonneau M, Desprez T, Martin M, Doblas VG, Bacete L, Miart F, Sormani R, Hématy K, Renou J, Landrein B, Murphy E, Van De Cotte B, Vernhettes S, De Smet I, Höfte H

(2018/07) - Current biology : CB

DOI
1496. Co-expression of squalene epoxidases with triterpene cyclases boosts production of triterpenoids in plants and yeast.

Dong L, Pollier J, Bassard JE, Ntallas G, Almeida A, Lazaridi E, Khakimov B, Arendt P, de Oliveira LS, Lota F, Goossens A, Michoux F, Bak S

(2018/07) - Metabolic engineering

DOI
1495. Protein Promiscuity in H2O2 Signaling.

Young D, Pedre B, Ezeriņa D, De Smet B, Lewandowska A, Tossounian MA, Bodra N, Huang J, Astolfi Rosado L, Van Breusegem F, Messens J

(2018/06) - Antioxidants & redox signaling

DOI
1494. Redox-dependent control of nuclear transcription in plants

Huaming He, Frank Van Breusegem, Amna Mhamdi

(2018/06) - Journal of Experimental Botany

DOI
1493. Plant cell wall sugars: sweeteners for a bio-based economy.

Van de Wouwer D, Boerjan W, Vanholme B

(2018/06) - Physiologia plantarum

DOI
1492. GS^yellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants

Nienke Besbrugge, Jelle Van Leene, Dominique Eeckhout, Bernard Cannoot, Shubhada R. Kulkarni, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Michiel Bontinck, Stijn Aesaert, Francis Impens, Kris Gevaert, Daniel Van Damme, Mieke Van Lijsebettens, Dirk Inzé, Klaas Vandepoele, Hilde Nelissen, Geert De Jaeger

(2018/06) - Plant Physiology

DOI
1491. Arabidopsis research requires a critical re-evaluation of genetic tools.

Nikonorova N, Yue K, Beeckman T, De Smet I

(2018/06) - Journal of experimental botany

DOI
1490. Review: Endoplasmic Reticulum-Associated Degradation (ERAD)-Dependent Control of (Tri)terpenoid Metabolism in Plants.

Erffelinck ML, Goossens A

(2018/06) - Planta medica

DOI
1489. GS^yellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants

Nienke Besbrugge, Jelle Van Leene, Dominique Eeckhout, Bernard Cannoot, Shubhada R. Kulkarni, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Michiel Bontinck, Stijn Aesaert, Francis Impens, Kris Gevaert, Daniel Van Damme, Mieke Van Lijsebettens, Dirk Inzé, Klaas Vandepoele, Hilde Nelissen, Geert De Jaeger

(2018/06) - Plant Physiology

DOI
1488. Arabidopsis research requires a critical re-evaluation of genetic tools.

Nikonorova N, Yue K, Beeckman T, De Smet I

(2018/06) - Journal of experimental botany

DOI
1487. Recent Trends in Plant Protein Complex Analysis in a Developmental Context.

Bontinck M, Van Leene J, Gadeyne A, De Rybel B, Eeckhout D, Nelissen H, De Jaeger G

(2018/05) - Frontiers in plant science

DOI
1486. KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis.

Gao Z, Daneva A, Salanenka Y, Van Durme M, Huysmans M, Lin Z, De Winter F, Vanneste S, Karimi M, Van de Velde J, Vandepoele K, Van de Walle D, Nowack MK

(2018/05) - Nature plants

DOI
1485. An engineered combinatorial module of transcription factors boosts production of monoterpenoid indole alkaloids in Catharanthus roseus.

Schweizer F, Colinas M, Pollier J, Van Moerkercke A, Vanden Bossche R, de Clercq R, Goossens A

(2018/05) - Metabolic engineering

DOI
1484. Recent Trends in Plant Protein Complex Analysis in a Developmental Context.

Bontinck M, Van Leene J, Gadeyne A, De Rybel B, Eeckhout D, Nelissen H, De Jaeger G

(2018/05) - Frontiers in plant science

DOI
1483. Pharmacological Strategies for Manipulating Plant Ca²⁺ Signalling.

De Vriese K, Costa A, Beeckman T, Vanneste S

(2018/05) - International journal of molecular sciences

DOI
1482. The Dual Face of Cyclin B1.

Schnittger A, De Veylder L

(2018/04) - Trends in plant science

DOI
1481. Seed germination in parasitic plants: what insights can we expect from strigolactone research?

Brun G, Braem L, Thoiron S, Gevaert K, Goormachtig S, Delavault P

(2018/04) - Journal of experimental botany

DOI
1480. Quantitative Tandem Affinity Purification, an Effective Tool to Investigate Protein Complex Composition in Plant Hormone Signaling: Strigolactones in the Spotlight.

Struk S, Braem L, Walton A, De Keyser A, Boyer FD, Persiau G, De Jaeger G, Gevaert K, Goormachtig S

(2018/04) - Frontiers in plant science

DOI
1479. Author Correction: The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Bossche RV, De Clercq R, Eeckhout D, Ron M, Somers DE, Inzé D, Goossens A

(2018/04) - Nature communications

DOI
1478. Diffusible repression of cytokinin signalling produces endodermal symmetry and passage cells.

Andersen TG, Naseer S, Ursache R, Wybouw B, Smet W, De Rybel B, Vermeer JEM, Geldner N

(2018/03) - Nature

DOI
1477. The Circadian Clock Sets the Time of DNA Replication Licensing to Regulate Growth in Arabidopsis.

Fung-Uceda J, Lee K, Seo PJ, Polyn S, De Veylder L, Mas P

(2018/03) - Developmental cell

DOI
1476. Post-transcriptional regulation of the oxidative stress response in plants.

Van Ruyskensvelde V, Van Breusegem F, Van Der Kelen K

(2018/03) - Free radical biology & medicine

DOI
1475. The Apicomplexa-specific glucosamine-6-phosphate N-acetyltransferase gene family encodes a key enzyme for glycoconjugate synthesis with potential as therapeutic target

Marta Cova, Borja López-Gutiérrez, Sara Artigas-Jerónimo, Aida González-Díaz, Giulia Bandini, Steven Maere, Lorenzo Carretero-Paulet, Luis Izquierdo

(2018/03) - Scientific Reports

DOI
1474. Pathways crossing mammalian and plant sulfenomic landscapes.

Huang J, Willems P, Van Breusegem F, Messens J

(2018/02) - Free radical biology & medicine

DOI
1473. Origins, evolution, domestication and diversity of Saccharomyces beer yeasts

Brigida Gallone, Stijn Mertens, Jonathan L Gordon, Steven Maere, Kevin J Verstrepen, Jan Steensels

(2018/02) - Current Opinion in Biotechnology

DOI
1472. MtNRLK1, a CLAVATA1-like leucine-rich repeat receptor-like kinase upregulated during nodulation in Medicago truncatula.

Laffont C, De Cuyper C, Fromentin J, Mortier V, De Keyser A, Verplancke C, Holsters M, Goormachtig S, Frugier F

(2018/02) - Scientific reports

DOI
1471. The Cellulose Synthases Are Cargo of the TPLATE Adaptor Complex

Clara Sánchez-Rodríguez, Yanyun Shi, Christopher Kesten, Dongmei Zhang, Gloria Sancho-Andrés, Alexander Ivakov, Edwin R. Lampugnani, Kamil Sklodowski, Masaru Fujimoto, Akihiko Nakano, Antony Bacic, Ian S. Wallace, Takashi Ueda, Daniel Van Damme, Yihua Zhou, Staffan Persson

(2018/02) - Molecular Plant

DOI
1470. The Auxin-Regulated CrRLK1L Kinase ERULUS Controls Cell Wall Composition during Root Hair Tip Growth.

Schoenaers S, Balcerowicz D, Breen G, Hill K, Zdanio M, Mouille G, Holman TJ, Oh J, Wilson MH, Nikonorova N, Vu LD, De Smet I, Swarup R, De Vos WH, Vissenberg K

(2018/02) - Current biology : CB

DOI
1469. Early mannitol-triggered changes in the Arabidopsis leaf (phospho)proteome

Natalia Nikonorova, Lisa Van den Broeck, Shanshuo Zhu, Brigitte van de Cotte, Marieke Dubois, Kris Gevaert, Dirk Inzé, Ive De Smet

(2018/02) -

DOI
1468. STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.

Li N, Liu Z, Wang Z, Ru L, Gonzalez N, Baekelandt A, Pauwels L, Goossens A, Xu R, Zhu Z, Inzé D, Li Y

(2018/02) - PLoS genetics

DOI
1467. Triterpene Messages from the EU-FP7 Project TriForC.

Goossens A, Osbourn A, Michoux F, Bak S

(2018/02) - Trends in plant science

DOI
1466. A Single Oxidosqualene Cyclase Produces the Seco-Triterpenoid α-Onocerin

Aldo Almeida, Lemeng Dong, Bekzod Khakimov, Jean-Etienne Bassard, Tessa Moses, Frederic Lota, Alain Goossens, Giovanni Appendino, Søren Bak

(2018/02) - Plant Physiology

DOI
1465. Growth rate rather than growth duration drives growth heterosis in maize B104 hybrids

Kim Feys, Kirin Demuynck, Jolien De Block, Anchal Bisht, Alex De Vliegher, Dirk Inzé, Hilde Nelissen

(2018/02) - Plant, Cell & Environment

DOI
1464. Nitrification in agricultural soils: impact, actors and mitigation.

Beeckman F, Motte H, Beeckman T

(2018/02) - Current opinion in biotechnology

DOI
1463. Multi-Parametric Screening in Arabidopsis thaliana Seedlings.

Nguyen L, Drozdzecki A, Goossens V, De Rybel B, Beeckman T, Audenaert D

(2018/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1462. Regulation of intercellular TARGET OF MONOPTEROS 7 protein transport in the Arabidopsis root.

Lu KJ, De Rybel B, van Mourik H, Weijers D

(2018/01) - Development (Cambridge, England)

DOI
1461. Emerging role of the plant ERF transcription factors in coordinating wound defense responses and repair

Jefri Heyman, Balkan Canher, Anchal Bisht, Fien Christiaens, Lieven De Veylder, Jenny Russinova

(2018/01) - Journal of Cell Science

DOI
1460. Application of Py-GC/MS coupled with PARAFAC2 and PLS-DA to study fast pyrolysis of genetically engineered poplars

Hilal E. Toraman, Victor Abrahamsson, Ruben Vanholme, Rebecca Van Acker, Frederik Ronsse, Gilles Pilate, Wout Boerjan, Kevin M. Van Geem, Guy B. Marin

(2018/01) - Journal of Analytical and Applied Pyrolysis

DOI
1459. Proteome Analysis of Arabidopsis Roots.

Nikonorova N, Vu LD, Stes E, Gevaert K, De Smet I

(2018/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1458. The TriForC database: a comprehensive up-to-date resource of plant triterpene biosynthesis.

Miettinen K, Iñigo S, Kreft L, Pollier J, De Bo C, Botzki A, Coppens F, Bak S, Goossens A

(2018/01) - Nucleic acids research

DOI
1457. Combinatorial Transcriptional Control of Plant Specialized Metabolism.

Colinas M, Goossens A

(2018/01) - Trends in plant science

DOI
1456. Calcium Ion Dynamics in Roots: Imaging and Analysis.

Himschoot E, Krebs M, Costa A, Beeckman T, Vanneste S

(2018/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1455. Long-Term In Vivo Imaging of Luciferase-Based Reporter Gene Expression in Arabidopsis Roots.

Xuan W, Opdenacker D, Vanneste S, Beeckman T

(2018/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1454. Multi-Parametric Screening in Arabidopsis thaliana Seedlings.

Nguyen L, Drozdzecki A, Goossens V, De Rybel B, Beeckman T, Audenaert D

(2018/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1453. Erratum to: Long-Term In Vivo Imaging of Luciferase-Based Reporter Gene Expression in Arabidopsis Roots.

Xuan W, Opdenacker D, Vanneste S, Beeckman T

(2018/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1452. Agulhas Current properties shape microbial community diversity and potential functionality

Phoma, S., Vikram, S., Jansson, J.K., Ansorge, I.J., Cowan, D.A., Van De Peer, Y., Makhalanyane, T.P.

(2018) - Scientific Reports

DOI
1451. A genome for gnetophytes and early evolution of seed plants

Wan, T., Liu, Z.-M., Li, L.-F., Leitch, A.R., Leitch, I.J., Lohaus, R., Liu, Z.-J., Xin, H.-P., Gong, Y.-B., Liu, Y., Wang, W.-C., Chen, L.-Y., Yang, Y., Kelly, L.J., Yang, J., Huang, J.-L., Li, Z., Liu, P., Zhang, L., Liu, H.-M., Wang, H., Deng, S.-H., Liu, M., Li, J., Ma, L., Lei, Y., Xu, W., Wu, L.-Q., Liu, F., Ma, Q., Yu, X.-R., Jiang, Z., Zhang, G.-Q., Li, S.-H., Li, R.-Q., Zhang, S.-Z., Wang, Q.-F., Van De Peer, Y., Zhang, J.-B., Wang, X.-M.

(2018) - Nature Plants

DOI
1450. BrownieAligner: accurate alignment of Illumina sequencing data to de Bruijn graphs

Heydari, M., Miclotte, G., Van de Peer, Y., Fostier, J.

(2018) - BMC Bioinformatics

DOI
1449. Draft genome assembly of the sheep scab mite, Psoroptes ovis

Burgess, S.T.G., Bartley, K., Marr, E.J., Wright, H.W., Weaver, R.J., Prickett, J.C., Hughes, M., Haldenby, S., Le, P.T., Rombauts, S., Van Leeuwen, T., Van de Peer, Y., Nisbet, A.J.

(2018) - Genome Announcements

DOI
1448. Draft genome assembly of the poultry red mite, dermanyssus gallinae

Burgess, S.T.G., Bartley, K., Nunn, F., Wright, H.W., Hughes, M., Gemmell, M., Haldenby, S., Paterson, S., Rombauts, S., Tomley, F.M., Blake, D.P., Pritchard, J., Schicht, S., Strube, C., Øines, Ø., Van Leeuwen, T., Van De Peer, Y., Nisbet, A.J.

(2018) - Microbiology Resource Announcements

DOI
1447. PLAZA 4.0: An integrative resource for functional, evolutionary and comparative plant genomics

Van Bel, M., Diels, T., Vancaester, E., Kreft, L., Botzki, A., Van De Peer, Y., Coppens, F., Vandepoele, K.

(2018) - Nucleic Acids Research

DOI
1446. The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization

Nishiyama, T., Sakayama, H., de Vries, J., Buschmann, H., Saint-Marcoux, D., Ullrich, K.K., Haas, F.B., Vanderstraeten, L., Becker, D., Lang, D., Vosolsobě, S., Rombauts, S., Wilhelmsson, P.K.I., Janitza, P., Kern, R., Heyl, A., Rümpler, F., Villalobos, L.I.A.C., Clay, J.M., Skokan, R., Toyoda, A., Suzuki, Y., Kagoshima, H., Schijlen, E., Tajeshwar, N., Catarino, B., Hetherington, A.J., Saltykova, A., Bonnot, C., Breuninger, H., Symeonidi, A., Radhakrishnan, G.V., Van Nieuwerburgh, F., Deforce, D., Chang, C., Karol, K.G., Hedrich, R., Ulvskov, P., Glöckner, G., Delwiche, C.F., Petrášek, J., Van de Peer, Y., Friml, J., Beilby, M., Dolan, L., Kohara, Y., Sugano, S., Fujiyama, A., Delaux, P.-M., Quint, M., Theißen, G., Hagemann, M., Harholt, J., Dunand, C., Zachgo, S., Langdale, J., Maumus, F., Van Der Straeten, D., Gould, S.B., Rensing, S.A.

(2018) - Cell

DOI
1445. The draft genomes of five agriculturally important African orphan crops

Chang, Y., Liu, H., Liu, M., Liao, X., Sahu, S.K., Fu, Y., Song, B., Cheng, S., Kariba, R., Muthemba, S., Hendre, P.S., Mayes, S., Ho, W.K., Yssel, A.E.J., Kendabie, P., Wang, S., Li, L., Muchugi, A., Jamnadass, R., Lu, H., Peng, S., Van Deynze, A., Simons, A., Yana-Shapiro, H., Van De Peer, Y., Xu, X., Yang, H., Wang, J., Liu, X.

(2018) - GigaScience

DOI
1444. A reservoir of 'historical' antibiotic resistance genes in remote pristine Antarctic soils

Van Goethem, M.W., Pierneef, R., Bezuidt, O.K.I., Van De Peer, Y., Cowan, D.A., Makhalanyane, T.P.

(2018) - Microbiome

DOI
1443. The sociobiology of genes: the gene’s eye view as a unifying behavioural-ecological framework for biological evolution

De Tiège, A., Van de Peer, Y., Braeckman, J., Tanghe, K.B.

(2018) - History and Philosophy of the Life Sciences

DOI
1442. Polyploid Arabidopsis species originated around recent glaciation maxima

Novikova, P.Y., Hohmann, N., Van de Peer, Y.

(2018) - Current Opinion in Plant Biology

DOI
1441. Editorial overview: Genome studies and molecular genetics: Treasure troves of evolution

Van de Peer, Y., Pires, J.C.

(2018) - Current Opinion in Plant Biology

DOI
1440. Fern genomes elucidate land plant evolution and cyanobacterial symbioses

Li, F.-W., Brouwer, P., Carretero-Paulet, L., Cheng, S., De Vries, J., Delaux, P.-M., Eily, A., Koppers, N., Kuo, L.-Y., Li, Z., Simenc, M., Small, I., Wafula, E., Angarita, S., Barker, M.S., Bräutigam, A., Depamphilis, C., Gould, S., Hosmani, P.S., Huang, Y.-M., Huettel, B., Kato, Y., Liu, X., Maere, S., McDowell, R., Mueller, L.A., Nierop, K.G.J., Rensing, S.A., Robison, T., Rothfels, C.J., Sigel, E.M., Song, Y., Timilsena, P.R., Van De Peer, Y., Wang, H., Wilhelmsson, P.K.I., Wolf, P.G., Xu, X., Der, J.P., Schluepmann, H., Wong, G.K.-S., Pryer, K.M.

(2018) - Nature Plants

DOI
1439. Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen

Lin, Y.-C., Wang, J., Delhomme, N., Schiffthaler, B., Sundström, G., Zuccolo, A., Nystedt, B., Hvidsten, T.R., de la Torre, A., Cossu, R.M., Hoeppner, M.P., Lantz, H., Scofield, D.G., Zamani, N., Johansson, A., Mannapperuma, C., Robinson, K.M., Mähler, N., Leitch, I.J., Pellicer, J., Park, E.-J., Van Montagu, M., Van de Peer, Y., Grabherr, M., Jansson, S., Ingvarsson, P.K., Street, N.R.

(2018) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1438. The ‘TranSeq’ 3′-end sequencing method for high-throughput transcriptomics and gene space refinement in plant genomes

Tzfadia, O., Bocobza, S., Defoort, J., Almekias-Siegl, E., Panda, S., Levy, M., Storme, V., Rombauts, S., Jaitin, D.A., Keren-Shaul, H., Van de Peer, Y., Aharoni, A.

(2018) - Plant Journal

DOI
1437. MorphDB: Prioritizing genes for specialized metabolism pathways and gene ontology categories in plants

Zwaenepoel, A., Diels, T., Amar, D., Van Parys, T., Shamir, R., Van de Peer, Y., Tzfadia, O.

(2018) - Frontiers in Plant Science

DOI
1436. Gene cluster conservation provides insight into cercosporin biosynthesis and extends production to the genus Colletotrichum

De Jonge, R., Ebert, M.K., Huitt-Roehl, C.R., Pal, P., Suttle, J.C., Spanner, R.E., Neubauer, J.D., Jurick, W.M., Stott, K.A., Secor, G.A., Thomma, B.P.H.J., De Peer, Y.V., Townsend, C.A., Bolton, M.D.

(2018) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1435. Insights into the Evolution of Multicellularity from the Sea Lettuce Genome

De Clerck, O., Kao, S.-M., Bogaert, K.A., Blomme, J., Foflonker, F., Kwantes, M., Vancaester, E., Vanderstraeten, L., Aydogdu, E., Boesger, J., Califano, G., Charrier, B., Clewes, R., Del Cortona, A., D'Hondt, S., Fernandez-Pozo, N., Gachon, C.M., Hanikenne, M., Lattermann, L., Leliaert, F., Liu, X., Maggs, C.A., Popper, Z.A., Raven, J.A., Van Bel, M., Wilhelmsson, P.K.I., Bhattacharya, D., Coates, J.C., Rensing, S.A., Van Der Straeten, D., Vardi, A., Sterck, L., Vandepoele, K., Van de Peer, Y., Wichard, T., Bothwell, J.H.

(2018) - Current Biology

DOI
1434. Domino reaction of a gold catalyzed 5-: Endo-dig cyclization and a [3,3]-sigmatropic rearrangement towards polysubstituted pyrazoles

Verlee, A., Heugebaert, T., Van Der Meer, T., Kerchev, P., Van Breusegem, F., Stevens, C.V.

(2018) - Organic and Biomolecular Chemistry

DOI
1433. The function of two type II metacaspases in woody tissues of Populus trees.

Bollhöner B, Jokipii-Lukkari S, Bygdell J, Stael S, Adriasola M, Muñiz L, Van Breusegem F, Ezcurra I, Wingsle G, Tuominen H

(2017/12) - The New phytologist

DOI
1432. The effect of altered lignin composition on mechanical properties of CINNAMYL ALCOHOL DEHYDROGENASE (CAD) deficient poplars.

Özparpucu M, Gierlinger N, Burgert I, Van Acker R, Vanholme R, Boerjan W, Pilate G, Déjardin A, Rüggeberg M

(2017/12) - Planta

DOI
1431. Plant Cytokinesis: Terminology for Structures and Processes

Andrei Smertenko, Farhah Assaad, František Baluška, Magdalena Bezanilla, Henrik Buschmann, Georgia Drakakaki, Marie-Theres Hauser, Marcel Janson, Yoshinobu Mineyuki, Ian Moore, Sabine Müller, Takashi Murata, Marisa S. Otegui, Emmanuel Panteris, Carolyn Rasmussen, Anne-Catherine Schmit, Jozef Šamaj, Lacey Samuels, L. Andrew Staehelin, Daniel Van Damme, Geoffrey Wasteneys, Viktor Žárský

(2017/12) - Trends in Cell Biology

DOI
1430. Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity

Setareh Tasdighian, Michiel Van Bel, Zhen Li, Yves Van de Peer, Lorenzo Carretero-Paulet, Steven Maere

(2017/11) - The Plant Cell

DOI
1429. Coordinated Functional Divergence of Genes after Genome Duplication in Arabidopsis thaliana

Riet De Smet, Ehsan Sabaghian, Zhen Li, Yvan Saeys, Yves Van de Peer

(2017/11) - The Plant Cell

DOI
1428. Wounding Triggers Callus Formation via Dynamic Hormonal and Transcriptional Changes

Momoko Ikeuchi, Akira Iwase, Bart Rymen, Alice Lambolez, Mikiko Kojima, Yumiko Takebayashi, Jefri Heyman, Shunsuke Watanabe, Mitsunori Seo, Lieven De Veylder, Hitoshi Sakakibara, Keiko Sugimoto

(2017/11) - Plant Physiology

DOI
1427. Self-protection of cytosolic malate dehydrogenase against oxidative stress in Arabidopsis.

Huang J, Niazi AK, Young D, Rosado LA, Vertommen D, Bodra N, Abdelgawwad MR, Vignols F, Wei B, Wahni K, Bashandy T, Bariat L, Van Breusegem F, Reichheld JP

(2017/11) - Journal of experimental botany

DOI
1426. The dual role of LESION SIMULATING DISEASE 1 as a condition-dependent scaffold protein and transcription regulator.

Czarnocka W, Van Der Kelen K, Willems P, Szechyńska-Hebda M, Shahnejat-Bushehri S, Balazadeh S, Rusaczonek A, Mueller-Roeber B, Van Breusegem F, Karpiński S

(2017/11) - Plant, cell & environment

DOI
1425. Vessel-Specific Reintroduction of CINNAMOYL-COA REDUCTASE1 (CCR1) in Dwarfed ccr1 Mutants Restores Vessel and Xylary Fiber Integrity and Increases Biomass.

De Meester B, de Vries L, Özparpucu M, Gierlinger N, Corneillie S, Pallidis A, Goeminne G, Morreel K, De Bruyne M, De Rycke R, Vanholme R, Boerjan W

(2017/11) - Plant physiology

DOI
1424. Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity

Setareh Tasdighian, Michiel Van Bel, Zhen Li, Yves Van de Peer, Lorenzo Carretero-Paulet, Steven Maere

(2017/11) - The Plant Cell

DOI
1423. Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem.

Wendrich JR, Möller BK, Li S, Saiga S, Sozzani R, Benfey PN, De Rybel B, Weijers D

(2017/10) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1422. Draft genome sequences of two unclassified bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, isolated from environmental samples

Russell J. S. Orr, Stephane Rombauts, Yves Van de Peer, Kamran Shalchian-Tabrizi

(2017/10) - Genome Announcements

DOI
1421. European contribution to the study of ROS: A summary of the findings and prospects for the future from the COST action BM1203 (EU-ROS)

Javier Egea, Isabel Fabregat, Yves M. Frapart, Pietro Ghezzi, Agnes Görlach, Thomas Kietzmann, Kateryna Kubaichuk, Ulla G. Knaus, Manuela G. Lopez, Gloria Olaso-Gonzalez, Andreas Petry, Rainer Schulz, Jose Vina, Paul Winyard, Kahina Abbas, Opeyemi S. Ademowo, Catarina B. Afonso, Ioanna Andreadou, Haike Antelmann, Fernando Antunes, Mutay Aslan, Markus M. Bachschmid, Rui M. Barbosa, Vsevolod Belousov, Carsten Berndt, David Bernlohr, Esther Bertrán, Alberto Bindoli, Serge P. Bottari, Paula M. Brito, Guia Carrara, Ana I. Casas, Afroditi Chatzi, Niki Chondrogianni, Marcus Conrad, Marcus S. Cooke, João G. Costa, Antonio Cuadrado, Pham My-Chan Dang, Barbara De Smet, Bilge Debelec–Butuner, Irundika H.K. Dias, Joe Dan Dunn, Amanda J. Edson, Mariam El Assar, Jamel El-Benna, Péter Ferdinandy, Ana S. Fernandes, Kari E. Fladmark, Ulrich Förstermann, Rashid Giniatullin, Frank Van Breusegem

(2017/10) - Redox Biology

DOI
1420. Disulfide bond formation protects Arabidopsis thaliana glutathione transferase tau 23 from oxidative damage.

Tossounian MA, Van Molle I, Wahni K, Jacques S, Gevaert K, Van Breusegem F, Vertommen D, Young D, Rosado LA, Messens J

(2017/10) - Biochimica et biophysica acta

DOI
1419. Cytoplasmic MTOCs control spindle orientation for asymmetric cell division in plants

Ken Kosetsu, Takashi Murata, Moé Yamada, Momoko Nishina, Joanna Boruc, Mitsuyasu Hasebe, Daniël Van Damme, Gohta Goshima

(2017/10) - Proceedings of the National Academy of Sciences

DOI
1418. Egg activation-triggered shape change in the Dictyota dichotoma (Phaeophyceae) zygote is actin-myosin and secretion dependent.

Kenny A Bogaert, Tom Beeckman, Olivier De Clerck

(2017/10) - Annals of botany

DOI
1417. Tissue-Specific Control of the Endocycle by the Anaphase Promoting Complex/Cyclosome Inhibitors UVI4 and DEL1

Jefri Heyman, Stefanie Polyn, Thomas Eekhout, Lieven De Veylder

(2017/09) - Plant Physiology

DOI
1416. Different Routes for Conifer- and Sinapaldehyde and Higher Saccharification upon Deficiency in the Dehydrogenase CAD1.

Van Acker R, Déjardin A, Desmet S, Hoengenaert L, Vanholme R, Morreel K, Laurans F, Kim H, Santoro N, Foster C, Goeminne G, Légée F, Lapierre C, Boerjan W

(2017/09) - Plant physiology

DOI
1415. Silencing CAFFEOYL SHIKIMATE ESTERASE Affects Lignification and Improves Saccharification in Poplar.

Saleme MLS, Cesarino I, Vargas L, Kim H, Vanholme R, Goeminne G, Van Acker R, Fonseca FCA, Pallidis A, Voorend W, Junior JN, Padmakshan D, Boerjan W

(2017/09) - Plant physiology

DOI
1414. The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels

Hilde Nelissen, Xiao‐Huan Sun, Bart Rymen, Yusuke Jikumaru, Mikko Kojima, Yumiko Takebayashi, Rafael Abbeloos, Kirin Demuynck, Veronique Storme, Marnik Vuylsteke, Jolien De Block, Dorota Herman, Frederik Coppens, Steven Maere, Yuji Kamiya, Hitoshi Sakakibara, Gerrit T.S. Beemster, Dirk Inzé

(2017/09) - Plant Biotechnology Journal

DOI
1413. Strigolactones in the Rhizosphere: Friend or Foe?

Carolien De Cuyper, Sofie Goormachtig

(2017/09) - Molecular Plant-Microbe Interactions®

DOI
1412. Strigolactones, karrikins and beyond

Carolien De Cuyper, Sylwia Struk, Lukas Braem, Kris Gevaert, Geert De Jaeger, Sofie Goormachtig

(2017/09) - Plant, Cell & Environment

DOI
1411. The ins and outs of Ca²⁺ in plant endomembrane trafficking.

Himschoot E, Pleskot R, Van Damme D, Vanneste S

(2017/09) - Current opinion in plant biology

DOI
1410. From early farmers to Norman Borlaug - the making of modern wheat.

Vergauwen D, De Smet I

(2017/09) - Current biology : CB

DOI
1409. Identification of Iridoid Glucoside Transporters in Catharanthus roseus.

Larsen B, Fuller VL, Pollier J, Van Moerkercke A, Schweizer F, Payne R, Colinas M, O'Connor SE, Goossens A, Halkier BA

(2017/09) - Plant & cell physiology

DOI
1408. Strobilurins as growth‐promoting compounds: how Stroby regulates Arabidopsis leaf growth

Judith Van Dingenen, Chrystalla Antoniou, Panagiota Filippou, Jacob Pollier, Nathalie Gonzalez, Stijn Dhondt, Alain Goossens, Vasileios Fotopoulos, Dirk Inzé

(2017/09) - Plant, Cell & Environment

DOI
1407. The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels.

Nelissen H, Sun XH, Rymen B, Jikumaru Y, Kojima M, Takebayashi Y, Abbeloos R, Demuynck K, Storme V, Vuylsteke M, De Block J, Herman D, Coppens F, Inzé D

(2017/09) - Plant biotechnology journal

DOI
1406. Generation of a Collection of Mutant Tomato Lines Using Pooled CRISPR Libraries

Thomas B. Jacobs, Ning Zhang, Dhruv Patel, Gregory B. Martin

(2017/08) - Plant Physiology

DOI
1405. Multiple PPR protein interactions are involved in the RNA editing system in Arabidopsis mitochondria and plastids.

Andrés-Colás N, Zhu Q, Takenaka M, De Rybel B, Weijers D, Van Der Straeten D

(2017/08) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1404. Erratum: Arabidopsis thaliana dehydroascorbate reductase 2: Conformational flexibility during catalysis.

Bodra N, Young D, Rosado LA, Pallo A, Wahni K, De Proft F, Huang J, Van Breusegem F, Messens J

(2017/08) - Scientific reports

DOI
1403. ACCERBATIN, a small molecule at the intersection of auxin and reactive oxygen species homeostasis with herbicidal properties.

Hu Y, Depaepe T, Smet D, Hoyerova K, Klíma P, Cuypers A, Cutler S, Buyst D, Morreel K, Boerjan W, Martins J, Petrášek J, Vandenbussche F, Van Der Straeten D

(2017/07) - Journal of experimental botany

DOI
1402. Plants for human health: greening biotechnology and synthetic biology.

Moses T, Goossens A

(2017/07) - Journal of experimental botany

DOI
1401. A translational synthetic biology platform for rapid access to gram-scale quantities of novel drug-like molecules.

Reed J, Stephenson MJ, Miettinen K, Brouwer B, Leveau A, Brett P, Goss RJM, Goossens A, O'Connell MA, Osbourn A

(2017/07) - Metabolic engineering

DOI
1400. Synthetic biology approaches for the production of plant metabolites in unicellular organisms

Tessa Moses, Payam Mehrshahi, Alison G Smith, Alain Goossens

(2017/07) - Journal of Experimental Botany

DOI
1399. Alteration in Auxin Homeostasis and Signaling by Overexpression Of PINOID Kinase Causes Leaf Growth Defects in Arabidopsis thaliana.

Saini K, Markakis MN, Zdanio M, Balcerowicz DM, Beeckman T, De Veylder L, Prinsen E, Beemster GTS, Vissenberg K

(2017/06) - Frontiers in plant science

DOI
1398. Unravelling the impact of lignin on cell wall mechanics: a comprehensive study on young poplar trees downregulated for CINNAMYL ALCOHOL DEHYDROGENASE (CAD).

Özparpucu M, Rüggeberg M, Gierlinger N, Cesarino I, Vanholme R, Boerjan W, Burgert I

(2017/06) - The Plant journal : for cell and molecular biology

DOI
1397. Synergistic action of auxin and cytokinin mediates aluminum-induced root growth inhibition in Arabidopsis.

Yang ZB, Liu G, Liu J, Zhang B, Meng W, Müller B, Hayashi KI, Zhang X, Zhao Z, De Smet I, Ding Z

(2017/06) - EMBO reports

DOI
1396. Correction: Corrigendum: Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism

Prashant D. Sonawane, Jacob Pollier, Sayantan Panda, Jedrzej Szymanski, Hassan Massalha, Meital Yona, Tamar Unger, Sergey Malitsky, Philipp Arendt, Laurens Pauwels, Efrat Almekias-Siegl, Ilana Rogachev, Sagit Meir, Pablo D. Cárdenas, Athar Masri, Marina Petrikov, Hubert Schaller, Arthur A. Schaffer, Avinash Kamble, Ashok P. Giri, Alain Goossens, Asaph Aharoni

(2017/06) - Nature Plants

DOI
1395. The transcription factor bZIP14 regulates the TCA cycle in the diatom Phaeodactylum tricornutum

Michiel Matthijs, Michele Fabris, Toshihiro Obata, Imogen Foubert, José Manuel Franco‐Zorrilla, Roberto Solano, Alisdair R Fernie, Wim Vyverman, Alain Goossens

(2017/06) - The EMBO Journal

DOI
1394. Plant nitrogen nutrition: sensing and signaling.

Xuan W, Tom Beeckman, Xu G

(2017/06) - Current opinion in plant biology

DOI
1393. Alteration in Auxin Homeostasis and Signaling by Overexpression Of PINOID Kinase Causes Leaf Growth Defects in Arabidopsis thaliana.

Saini K, Markakis MN, Zdanio M, Balcerowicz DM, Beeckman T, De Veylder L, Prinsen E, Beemster GTS, Vissenberg K

(2017/06) - Frontiers in plant science

DOI
1392. Root hydrotropism is controlled via a cortex-specific growth mechanism.

Dietrich D, Pang L, Kobayashi A, Fozard JA, Boudolf V, Bhosale R, Antoni R, Nguyen T, Hiratsuka S, Fujii N, Miyazawa Y, Bae TW, Wells DM, Owen MR, Bennett MJ

(2017/05) - Nature plants

DOI
1391. A Key Role for Apoplastic H₂O₂ in Norway Spruce Phenolic Metabolism.

Laitinen T, Morreel K, Delhomme N, Gauthier A, Schiffthaler B, Nickolov K, Brader G, Lim KJ, Teeri TH, Street NR, Boerjan W, Kärkönen A

(2017/05) - Plant physiology

DOI
1390. Evolutionary Context Improves Regulatory Network Predictions

Jonathan L. Gordon, Brigida Gallone, Steven Maere, Kevin J. Verstrepen

(2017/05) - Cell Systems

DOI
1389. Primary Root

Inge Verstraeten, Ive De Smet

(2017/05) - Encyclopedia of Life Sciences

DOI
1388. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

Ritter A, Iñigo S, Fernández-Calvo P, Heyndrickx KS, Dhondt S, Shi H, De Milde L, Vanden Bossche R, De Clercq R, Eeckhout D, Ron M, Somers DE, Goossens A

(2017/05) - Nature communications

DOI
1387. N-terminal proteomics assisted profiling of the unexplored translation initiation landscape in Arabidopsis thaliana.

Willems P, Ndah E, Jonckheere V, Stael S, Sticker A, Martens L, Van Breusegem F, Gevaert K, Van Damme P

(2017/04) -

DOI
1386. RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis

Xin’Ai Zhao, Jonathan Bramsiepe, Matthias Van Durme, Shinichiro Komaki, Maria Ada Prusicki, Daisuke Maruyama, Joachim Forner, Anna Medzihradszky, Erik Wijnker, Hirofumi Harashima, You Lu, Anja Schmidt, Daniela Guthörl, Rosa Sahún Logroño, Yonsheng Guan, Gaetan Pochon, Ueli Grossniklaus, Thomas Laux, Tetsuya Higashiyama, Jan U. Lohmann, Moritz K. Nowack, Arp Schnittger

(2017/04) - Science

DOI
1385. Abscisic Acid as Pathogen Effector and Immune Regulator.

Lievens L, Pollier J, Goossens A, Beyaert R, Staal J

(2017/04) - Frontiers in plant science

DOI
1384. PHR1 Balances between Nutrition and Immunity in Plants.

Hans Motte, Tom Beeckman

(2017/04) - Developmental cell

DOI
1383. RIMA-Dependent Nuclear Accumulation of IYO Triggers Auxin-Irreversible Cell Differentiation in Arabidopsis.

Muñoz A, Mangano S, González-García MP, Contreras R, Sauer M, De Rybel B, Weijers D, Sánchez-Serrano JJ, Sanmartín M, Rojo E

(2017/03) - The Plant cell

DOI
1382. Regulation of intercellular TARGET OF MONOPTEROS 7 protein transport in theArabidopsisroot

Lu K, De Rybel B, van Mourik H, Weijers D

(2017/03) -

DOI
1381. Exploiting cell cycle inhibitor genes of the KRP family to control root-knot nematode induced feeding sites in plants.

Coelho RR, Vieira P, Antonino de Souza Júnior JD, Martin-Jimenez C, De Veylder L, Cazareth J, Engler G, Grossi-de-Sa MF, de Almeida Engler J

(2017/03) - Plant, cell & environment

DOI
1380. Identification of dimedone-trapped sulfenylated proteins in plants under stress.

Akter S, Carpentier S, Van Breusegem F, Messens J

(2017/03) - Biochemistry and biophysics reports

DOI
1379. The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.

Zhang X, Ivanova A, Vandepoele K, Radomiljac J, Van de Velde J, Berkowitz O, Willems P, Xu Y, Ng S, Van Aken O, Duncan O, Zhang B, Storme V, Chan KX, Vaneechoutte D, Pogson BJ, Van Breusegem F, Whelan J, De Clercq I

(2017/03) -

DOI
1378. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.

Ueda M, Aichinger E, Gong W, Groot E, Verstraeten I, Vu LD, De Smet I, Higashiyama T, Umeda M, Laux T

(2017/03) - Genes & development

DOI
1377. Altered expression of maize PLASTOCHRON1 enhances biomass and seed yield by extending cell division duration.

Sun X, Cahill J, Van Hautegem T, Feys K, Whipple C, Novák O, Delbare S, Versteele C, Demuynck K, De Block J, Storme V, Claeys H, Van Lijsebettens M, Nelissen H

(2017/03) - Nature communications

DOI
1376. AtSERPIN1 is an inhibitor of the metacaspase AtMC1-mediated cell death and autocatalytic processing in planta.

Lema Asqui S, Vercammen D, Serrano I, Valls M, Rivas S, Van Breusegem F, Conlon FL, Dangl JL, Coll NS

(2017/02) -

DOI
1375. Arabidopsis thaliana dehydroascorbate reductase 2: Conformational flexibility during catalysis.

Bodra N, Young D, Astolfi Rosado L, Pallo A, Wahni K, De Proft F, Huang J, Van Breusegem F, Messens J

(2017/02) -

DOI
1374. Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees.

Beckers B, Op De Beeck M, Weyens N, Boerjan W, Vangronsveld J

(2017/02) - Microbiome

DOI
1373. The Origin of Floral Organ Identity Quartets

Philip Ruelens, Zhicheng Zhang, Hilda van Mourik, Steven Maere, Kerstin Kaufmann, Koen Geuten

(2017/02) - The Plant Cell

DOI
1372. The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.

Zhang X, Ivanova A, Vandepoele K, Radomiljac J, Van de Velde J, Berkowitz O, Willems P, Xu Y, Ng S, Van Aken O, Duncan O, Zhang B, Storme V, Chan KX, Vaneechoutte D, Pogson BJ, Van Breusegem F, Whelan J, De Clercq I

(2017/02) - Plant Physiology

DOI
1371. The ancient CYP716 family is a major contributor to the diversification of eudicot triterpenoid biosynthesis.

Miettinen K, Pollier J, Buyst D, Arendt P, Csuk R, Sommerwerk S, Moses T, Mertens J, Sonawane PD, Pauwels L, Aharoni A, Martins J, Nelson DR, Goossens A

(2017/02) - Nature communications

DOI
1370. An endoplasmic reticulum-engineered yeast platform for overproduction of triterpenoids.

Arendt P, Miettinen K, Pollier J, De Rycke R, Callewaert N, Goossens A

(2017/02) - Metabolic engineering

DOI
1369. Dynamic control of lateral root positioning

Möller B, Xuan W, Tom Beeckman

(2017/02) - Current Opinion in Plant Biology

DOI
1368. FRET-FLIM for Visualizing and Quantifying Protein Interactions in Live Plant Cells.

Rios AF, Radoeva T, De Rybel B, Weijers D, Borst JW

(2017/01) - Methods in Molecular Biology

DOI
1367. Modification of DNA Checkpoints to Confer Aluminum Tolerance.

Eekhout T, Larsen P, De Veylder L

(2017/01) - Trends in plant science

DOI
1366. cis-Cinnamic Acid Is a Novel, Natural Auxin Efflux Inhibitor That Promotes Lateral Root Formation

Ward Steenackers, Petr Klíma, Mussa Quareshy, Igor Cesarino, Robert P. Kumpf, Sander Corneillie, Pedro Araújo, Tom Viaene, Geert Goeminne, Moritz K. Nowack, Karin Ljung, Jiří Friml, Joshua J. Blakeslee, Ondřej Novák, Eva Zažímalová, Richard Napier, Wout Boerjan, Bartel Vanholme

(2017/01) - Plant Physiology

DOI
1365. Live-cell analysis of DNA methylation during sexual reproduction in Arabidopsis reveals context and sex-specific dynamics controlled by noncanonical RdDM.

Ingouff M, Selles B, Michaud C, Vu TM, Berger F, Schorn AJ, Autran D, Van Durme M, Nowack MK, Martienssen RA, Grimanelli D

(2017/01) - Genes & development

DOI
1364. Tips and Tricks for Exogenous Application of Synthetic Post-translationally Modified Peptides to Plants.

Czyzewicz N, Stes E, De Smet I

(2017/01) - Methods in molecular biology (Clifton, N.J.)

DOI
1363. Two-step cell polarization in algal zygotes.

Bogaert KA, Tom Beeckman, De Clerck O

(2017/01) - Nature plants

DOI
1362. Different routes for conifer- and sinapaldehyde and higher saccharification upon deficiency in the dehydrogenase CAD1

No contributors listed

(2017) - PLANT PHYSIOLOGY

No link available
1361. In Vivo Identification of Plant Protein Complexes Using IP-MS/MS

Jos R. Wendrich, Sjef Boeren, Barbara K. Möller, Dolf Weijers, Bert De Rybel

(2017) - Methods in Molecular Biology

DOI
1360. Genome of wild olive and the evolution of oil biosynthesis

Unver, T., Wu, Z., Sterck, L., Turktas, M., Lohaus, R., Li, Z., Yang, M., He, L., Deng, T., Escalante, F.J., Llorens, C., Roig, F.J., Parmaksiz, I., Dundar, E., Xie, F., Zhang, B., Ipek, A., Uranbey, S., Erayman, M., Ilhan, E., Badad, O., Ghazal, H., Lightfoot, D.A., Kasarla, P., Colantonio, V., Tombuloglu, H., Hernandez, P., Mete, N., Cetin, O., Van Montagu, M., Yang, H., Gao, Q., Dorado, G., Van de Peer, Y.

(2017) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1359. Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus

Cormier, A., Avia, K., Sterck, L., Derrien, T., Wucher, V., Andres, G., Monsoor, M., Godfroy, O., Lipinska, A., Perrineau, M.-M., Van De Peer, Y., Hitte, C., Corre, E., Coelho, S.M., Cock, J.M.

(2017) - New Phytologist

DOI
1358. Revisiting ancestral polyploidy in plants

Ruprecht, C., Lohaus, R., Vanneste, K., Mutwil, M., Nikoloski, Z., Van De Peer, Y., Persson, S.

(2017) - Science Advances

DOI
1357. Single-copy genes as molecularmarkers for phylogenomic studies in seed plants

Li, Z., De La Torre, A.R., Sterck, L., Cánovas, F.M., Avila, C., Merino, I., Cabezas, J.A., Cervera, M.T., Ingvarsson, P.K., Van De Peer, Y.

(2017) - Genome Biology and Evolution

DOI
1356. Network-based integration of systems genetics data reveals pathways associated with lignocellulosic biomass accumulation and processing

Mizrachi, E., Verbeke, L., Christie, N., Fierro, A.C., Mansfield, S.D., Davis, M.F., Gjersing, E., Tuskan, G.A., Van Montagu, M., Van De Peer, Y., Marchal, K., Myburg, A.A.

(2017) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1355. A Cytoscape app for motif enumeration with ISMAGS

Van Parys, T., Melckenbeeck, I., Houbraken, M., Audenaert, P., Colle, D., Pickavet, M., Demeester, P., Van De Peer, Y.

(2017) - Bioinformatics

DOI
1354. Systems genetics reveals a transcriptional network associated with susceptibility in the maize–grey leaf spot pathosystem

Christie, N., Myburg, A.A., Joubert, F., Murray, S.L., Carstens, M., Lin, Y.-C., Meyer, J., Crampton, B.G., Christensen, S.A., Ntuli, J.F., Wighard, S.S., Van de Peer, Y., Berger, D.K.

(2017) - Plant Journal

DOI
1353. Network analysis of woody biomass

Mizrachi E, Verbeke L, Van de Peer Y, Marchal K, Myburg AA

(2017) - Cell Systems

No link available
1352. Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution

Causier, B., Li, Z., De Smet, R., Lloyd, J.P.B., Van De Peer, Y., Davies, B.

(2017) - Scientific Reports

DOI
1351. Contrasting rates of molecular evolution and patterns of selection among gymnosperms and flowering plants

De La Torre, A.R., Li, Z., Van De Peer, Y., Ingvarsson, P.K.

(2017) - Molecular Biology and Evolution

DOI
1350. Draft genome sequences of two unclassified bacteria, Hydrogenophaga sp. strains IBVHS1 and IBVHS2, isolated from environmental samples

Orr, R.J.S., Rombauts, S., Van de Peer, Y., Shalchian-Tabrizi, K.

(2017) - Genome Announcements

DOI
1349. Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples

Orr, R.J.S., Rombauts, S., Van de Peer, Y., Shalchian-Tabrizi, K.

(2017) - Genome Announcements

DOI
1348. Evidence for an ancient whole genome duplication in the cycad lineage

Roodt, D., Lohaus, R., Sterck, L., Swanepoel, R.L., Van De Peer, Y., Mizrachi, E.

(2017) - PLoS ONE

DOI
1347. Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes

Vlastaridis, P., Kyriakidou, P., Chaliotis, A., Van de Peer, Y., Oliver, S.G., Amoutzias, G.D.

(2017) - GigaScience

DOI
1346. Evaluation of the impact of Illumina error correction tools on de novo genome assembly

Heydari, M., Miclotte, G., Demeester, P., Van de Peer, Y., Fostier, J.

(2017) - BMC Bioinformatics

DOI
1345. Draft genome of Cercospora zeina, Fusarium pininemorale, Hawksworthiomyces lignivorus, Huntiella decipiens and Ophiostoma ips

Wingfield, B.D., Berger, D.K., Steenkamp, E.T., Lim, H.-J., Duong, T.A., Bluhm, B.H., Wilhelm de Beer, Z., Vos, L.D., Fourie, G., Naidoo, K., Olivier, N., Lin, Y.-C., Van de Peer, Y., Joubert, F., Crampton, B.G., Swart, V., Soal, N., Tatham, C., van der Nest, M.A., van der Merwe, N.A., van Wyk, S., Markus Wilken, P., Wingfield, M.J.

(2017) - IMA Fungus

DOI
1344. The Apostasia genome and the evolution of orchids

Zhang, G.-Q., Liu, K.-W., Li, Z., Lohaus, R., Hsiao, Y.-Y., Niu, S.-C., Wang, J.-Y., Lin, Y.-C., Xu, Q., Chen, L.-J., Yoshida, K., Fujiwara, S., Wang, Z.-W., Zhang, Y.-Q., Mitsuda, N., Wang, M., Liu, G.-H., Pecoraro, L., Huang, H.-X., Xiao, X.-J., Lin, M., Wu, X.-Y., Wu, W.-L., Chen, Y.-Y., Chang, S.-B., Sakamoto, S., Ohme-Takagi, M., Yagi, M., Zeng, S.-J., Shen, C.-Y., Yeh, C.-M., Luo, Y.-B., Tsai, W.-C., Van De Peer, Y., Liu, Z.-J.

(2017) - Nature

DOI
1343. The gene expression landscape of pine seedling tissues

Cañas, R.A., Li, Z., Pascual, M.B., Castro-Rodríguez, V., Ávila, C., Sterck, L., Van de Peer, Y., Cánovas, F.M.

(2017) - Plant Journal

DOI
1342. The evolutionary significance of polyploidy

Van De Peer, Y., Mizrachi, E., Marchal, K.

(2017) - Nature Reviews Genetics

DOI
1341. OMSim: a simulator for optical map data

Miclotte, G., Plaisance, S., Rombauts, S., Van de Peer, Y., Audenaert, P., Fostier, J.

(2017) - Bioinformatics (Oxford, England)

DOI
1340. A chemoselective and continuous synthesis of m-sulfamoylbenzamide analogues.

Verlee A, Heugebaert T, van der Meer T, Kerchev PI, Van Breusegem F, Stevens CV

(2017) -

DOI
1339. Measurement of Transcripts Associated with Photorespiration and Related Redox Signaling.

Mhamdi A, Kerchev PI, Willems P, Noctor G, Van Breusegem F

(2017) - Methods in molecular biology (Clifton, N.J.)

DOI
1338. Assessment of the function and expression pattern of auxin response factor B3 in the model legume plant Medicago truncatula

Miglena REVALSKA, Valya VASSILEVA, Grigor ZEHIROV, Sofie GOORMACHTIG, Anelia IANTCHEVA

(2017) - Turkish Journal of Biology

DOI
1337. Proteome Profiling of Wheat Shoots from Different Cultivars

Vu, Lam Dai, Verstraeten, Inge, Stes, Elisabeth, Van Bel, Michiel, Coppens, Frederik, Gevaert, Kris, De Smet, Ive

(2017) - Frontiers in Plant Science

DOI
1336. Low-steady-state metabolism induced by elevated CO2 increases resilience to UV radiation in the unicellular green-algae Dunaliella tertiolecta

García-Gómez C, Mata MT, Van Breusegem F, Segovi M

(2016/12) - Environmental and Experimental Botany

DOI
1335. Silencing CHALCONE SYNTHASE in Maize Impedes the Incorporation of Tricin into Lignin and Increases Lignin Content.

Eloy NB, Voorend W, Lan W, Saleme ML, Cesarino I, Vanholme R, Smith RA, Goeminne G, Pallidis A, Morreel K, Nicomedes J, Ralph J, Boerjan W

(2016/12) - Plant physiology

DOI
1334. Plant cholesterol biosynthetic pathway overlaps with phytosterol metabolism

Prashant D. Sonawane, Jacob Pollier, Sayantan Panda, Jedrzej Szymanski, Hassan Massalha, Meital Yona, Tamar Unger, Sergey Malitsky, Philipp Arendt, Laurens Pauwels, Efrat Almekias-Siegl, Ilana Rogachev, Sagit Meir, Pablo D. Cárdenas, Athar Masri, Marina Petrikov, Hubert Schaller, Arthur A. Schaffer, Avinash Kamble, Ashok P. Giri, Alain Goossens, Asaph Aharoni

(2016/12) - Nature Plants

DOI
1333. Role and functioning of bHLH transcription factors in jasmonate signalling

Jonas Goossens, Jan Mertens, Alain Goossens

(2016/12) - Journal of Experimental Botany

DOI
1332. Theoretical approaches to understanding root vascular patterning: a consensus between recent models.

Mellor N, Adibi M, El-Showk S, De Rybel B, King J, Mähönen AP, Weijers D, Bishopp A

(2016/11) - Journal of Experimental Botany

DOI
1331. Micropyrolysis of natural poplar mutants with altered p-hydroxyphenyl lignin content

Jop Vercruysse, Andries Poupaert, Ruben Vanholme, Catherine Bastien, Bartel Vanholme, Wout Boerjan, Wolter Prins, Frederik Ronsse

(2016/11) - Journal of Analytical and Applied Pyrolysis

DOI
1330. Degradation of lignin β-aryl ether units in Arabidopsis thaliana expressing LigD, LigF and LigG from Sphingomonas paucimobilis SYK-6.

Mnich E, Vanholme R, Oyarce P, Liu S, Lu F, Goeminne G, Jørgensen B, Motawie MS, Boerjan W, Ralph J, Ulvskov P, Møller BL, Bjarnholt N, Harholt J

(2016/11) - Plant biotechnology journal

DOI
1329. Isolation of protein complexes from the model legume Medicago truncatula by tandem affinity purification in hairy root cultures

Jonas Goossens, Nathan De Geyter, Alan Walton, Dominique Eeckhout, Jan Mertens, Jacob Pollier, Jennifer Fiallos‐Jurado, Annick De Keyser, Rebecca De Clercq, Jelle Van Leene, Kris Gevaert, Geert De Jaeger, Sofie Goormachtig, Alain Goossens

(2016/11) - The Plant Journal

DOI
1328. cis-Cinnamic Acid Is a Novel, Natural Auxin Efflux Inhibitor That Promotes Lateral Root Formation.

Steenackers W, Klíma P, Quareshy M, Cesarino I, Kumpf RP, Corneillie S, Araújo P, Viaene T, Goeminne G, Nowack MK, Ljung K, Friml J, Blakeslee JJ, Vanholme B

(2016/11) - Plant physiology

DOI
1327. Dying two deaths - programmed cell death regulation in development and disease.

Huysmans M, Lema A S, Coll NS, Nowack MK

(2016/11) - Current opinion in plant biology

DOI
1326. Phosphorylation of MAP65-1 by Arabidopsis Aurora Kinases Is Required for Efficient Cell Cycle Progression.

Boruc J, Weimer AK, Stoppin-Mellet V, Mylle E, Kosetsu K, Cedeño C, Jaquinod M, Njo M, De Milde L, Tompa P, Gonzalez N, Inzé D, Beeckman T, Vantard M, Van Damme D

(2016/11) - Plant physiology

DOI
1325. Cloning and Functional Characterization of Cycloartenol Synthase from the Red Seaweed Laurencia dendroidea.

Calegario G, Pollier J, Arendt P, de Oliveira LS, Thompson C, Soares AR, Pereira RC, Goossens A, Thompson FL

(2016/11) - PloS one

DOI
1324. Phosphorylation of MAP65-1 by Arabidopsis Aurora Kinases Is Required for Efficient Cell Cycle Progression.

Boruc J, Weimer AK, Stoppin-Mellet V, Mylle E, Kosetsu K, Cedeño C, Jaquinod M, Njo M, De Milde L, Tompa P, Gonzalez N, Inzé D, Beeckman T, Vantard M, Van Damme D

(2016/11) - Plant physiology

DOI
1323. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.

Heyman J, Cools T, Canher B, Shavialenka S, Traas J, Vercauteren I, Van den Daele H, Persiau G, De Jaeger G, Sugimoto K, De Veylder L

(2016/10) - Nature plants

DOI
1322. Leaf Growth Response to Mild Drought: Natural Variation in Arabidopsis Sheds Light on Trait Architecture

Pieter Clauw, Frederik Coppens, Arthur Korte, Dorota Herman, Bram Slabbinck, Stijn Dhondt, Twiggy Van Daele, Liesbeth De Milde, Mattias Vermeersch, Katrien Maleux, Steven Maere, Nathalie Gonzalez, Dirk Inzé

(2016/10) - The Plant Cell

DOI
1321. Redundancy and specificity in jasmonate signalling

Andrea Chini, Selena Gimenez-Ibanez, Alain Goossens, Roberto Solano

(2016/10) - Current Opinion in Plant Biology

DOI
1320. Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development

Jelle Van Leene, Jonas Blomme, Shubhada R Kulkarni, Bernard Cannoot, Nancy De Winne, Dominique Eeckhout, Geert Persiau, Eveline Van De Slijke, Leen Vercruysse, Robin Vanden Bossche, Ken S Heyndrickx, Steffen Vanneste, Alain Goossens, Kris Gevaert, Klaas Vandepoele, Nathalie Gonzalez, Dirk Inzé, Geert De Jaeger

(2016/10) - Journal of Experimental Botany

DOI
1319. Clade IVa Basic Helix-Loop-Helix Transcription Factors Form Part of a Conserved Jasmonate Signaling Circuit for the Regulation of Bioactive Plant Terpenoid Biosynthesis.

Mertens J, Van Moerkercke A, Vanden Bossche R, Pollier J, Goossens A

(2016/10) - Plant & cell physiology

DOI
1318. Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves.

Vu LD, Stes E, Van Bel M, Nelissen H, Maddelein D, Inzé D, Coppens F, Martens L, Gevaert K, De Smet I

(2016/10) - Journal of proteome research

DOI
1317. Abiotic regulation of growth and fertility in the sporophyte of Dictyota dichotoma (Hudson) J.V. Lamouroux (Dictyotales, Phaeophyceae)

Kenny Bogaert, Tom Beeckman, Olivier De Clerck

(2016/10) - Journal of Applied Phycology

DOI
1316. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency

Zhubing Hu, Rudy Vanderhaeghen, Toon Cools, Yan Wang, Inge De Clercq, Olivier Leroux, Long Nguyen, Katharina Belt, A. Harvey Millar, Dominique Audenaert, Pierre Hilson, Ian Small, Grégory Mouille, Samantha Vernhettes, Frank Van Breusegem, James Whelan, Herman Höfte, Lieven De Veylder

(2016/09) - The Plant Cell

DOI
1315. RBOH-mediated ROS production facilitates lateral root emergence in Arabidopsis.

Orman-Ligeza B, Parizot B, de Rycke R, Fernandez A, Himschoot E, Van Breusegem F, Bennett MJ, Périlleux C, Beeckman T, Draye X

(2016/09) -

DOI
1314. Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts

Brigida Gallone, Jan Steensels, Troels Prahl, Leah Soriaga, Veerle Saels, Beatriz Herrera-Malaver, Adriaan Merlevede, Miguel Roncoroni, Karin Voordeckers, Loren Miraglia, Clotilde Teiling, Brian Steffy, Maryann Taylor, Ariel Schwartz, Toby Richardson, Christopher White, Guy Baele, Steven Maere, Kevin J. Verstrepen

(2016/09) - Cell

DOI
1313. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency

Zhubing Hu, Rudy Vanderhaeghen, Toon Cools, Yan Wang, Inge De Clercq, Olivier Leroux, Long Nguyen, Katharina Belt, A. Harvey Millar, Dominique Audenaert, Pierre Hilson, Ian Small, Grégory Mouille, Samantha Vernhettes, Frank Van Breusegem, James Whelan, Herman Höfte, Lieven De Veylder

(2016/09) - The Plant Cell

DOI
1312. Isolation of protein complexes from the model legume Medicago truncatula by tandem affinity purification in hairy root cultures.

Goossens J, De Geyter N, Walton A, Eeckhout D, Mertens J, Pollier J, Fiallos-Jurado J, De Keyser A, De Clercq R, Van Leene J, Gevaert K, De Jaeger G, Goossens A

(2016/09) - The Plant journal : for cell and molecular biology

DOI
1311. RBOH-mediated ROS production facilitates lateral root emergence in Arabidopsis

Beata Orman-Ligeza, Boris Parizot, Riet de Rycke, Ana Fernandez, Ellie Himschoot, Frank Van Breusegem, Malcolm J. Bennett, Claire Périlleux, Tom Beeckman, Xavier Draye

(2016/09) - Development

DOI
1310. CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis.

Roberts I, Smith S, Stes E, De Rybel B, Staes A, van de Cotte B, Njo MF, Dedeyne L, Demol H, Lavenus J, Audenaert D, Gevaert K, Beeckman T, De Smet I

(2016/08) -

DOI
1309. SHORT-ROOT Deficiency Alleviates the Cell Death Phenotype of the Arabidopsis catalase2 Mutant under Photorespiration-Promoting Conditions.

Waszczak C, Kerchev PI, Mühlenbock P, Hoeberichts FA, Van Der Kelen K, Mhamdi A, Willems P, Denecker J, Kumpf RP, Noctor G, Messens J, Van Breusegem F

(2016/08) -

DOI
1308. Diagonal chromatography to study plant protein modifications.

Walton A, Tsiatsiani L, Jacques S, Stes E, Messens J, Van Breusegem F, Goormachtig S, Gevaert K

(2016/08) -

DOI
1307. Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.

Hu Z, Vanderhaeghen R, Cools T, Wang Y, De Clercq I, Leroux O, Nguyen L, Belt K, Millar AH, Audenaert D, Hilson P, Small I, Mouille G, Vernhettes S, Van Breusegem F, Whelan J, Höfte H, De Veylder L

(2016/08) - The Plant cell

DOI
1306. Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.

Zwack PJ, De Clercq I, Howton TC, Hallmark HT, Hurny A, Keshishian EA, Parish AM, Benkova E, Mukhtar MS, Van Breusegem F, Rashotte AM

(2016/08) - Plant physiology

DOI
1305. The SBT6.1 subtilase processes the GOLVEN1 peptide controlling cell elongation.

Ghorbani S, Hoogewijs K, Pečenková T, Fernandez A, Inzé A, Eeckhout D, Kawa D, De Jaeger G, Beeckman T, Madder A, Van Breusegem F, Hilson P

(2016/08) -

DOI
1304. The allelochemical MDCA inhibits lignification and affects auxin homeostasis

Ward Jan Steenackers, Igor Cesarino, Petr Klíma, Mussa Quareshy, Ruben Vanholme, Sander Corneillie, Robert P. Kumpf, Dorien Van de Wouwer, Karin Ljung, Geert Goeminne, Ondrej Novak, Eva Zažímalová, Richard M. Napier, Wout A Boerjan, Bartel Vanholme

(2016/08) - Plant Physiology

DOI
1303. Chemical Genetics Uncovers Novel Inhibitors of Lignification, Including p-Iodobenzoic Acid Targeting CINNAMATE-4-HYDROXYLASE.

Van de Wouwer D, Vanholme R, Decou R, Goeminne G, Audenaert D, Nguyen L, Höfer R, Pesquet E, Vanholme B, Boerjan W

(2016/08) - Plant physiology

DOI
1302. Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.

Zwack PJ, De Clercq I, Howton TC, Hallmark HT, Hurny A, Keshishian EA, Parish AM, Benkova E, Mukhtar MS, Van Breusegem F, Rashotte AM

(2016/08) - Plant Physiology

DOI
1301. The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.

Weimer AK, Biedermann S, Harashima H, Roodbarkelari F, Takahashi N, Foreman J, Guan Y, Pochon G, Heese M, Van Damme D, Sugimoto K, Koncz C, Schnittger A

(2016/08) - The EMBO journal

DOI
1300. The Arabidopsis Iron-Sulfur Protein GRXS17 is a Target of the Ubiquitin E3 Ligases RGLG3 and RGLG4.

Nagels Durand A, Iñigo S, Ritter A, Iniesto E, De Clercq R, Staes A, Van Leene J, Rubio V, Gevaert K, De Jaeger G, Pauwels L, Goossens A

(2016/08) - Plant & cell physiology

DOI
1299. Glutaredoxin GRXS17 Associates with the Cytosolic Iron-Sulfur Cluster Assembly Pathway.

Iñigo S, Durand AN, Ritter A, Le Gall S, Termathe M, Klassen R, Tohge T, De Coninck B, Van Leene J, De Clercq R, Cammue BP, Fernie AR, Gevaert K, Goossens A

(2016/08) - Plant physiology

DOI
1298. The basic helix-loop-helix transcription factor BIS2 is essential for monoterpenoid indole alkaloid production in the medicinal plant Catharanthus roseus.

Van Moerkercke A, Steensma P, Gariboldi I, Espoz J, Purnama PC, Schweizer F, Miettinen K, Vanden Bossche R, De Clercq R, Memelink J, Goossens A

(2016/08) - The Plant journal : for cell and molecular biology

DOI
1297. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.

Van Aken O, De Clercq I, Ivanova A, Law SR, Van Breusegem F, Millar AH, Whelan J

(2016/07) -

DOI
1296. Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.

Kerchev P, Waszczak C, Lewandowska A, Willems P, Shapiguzov A, Li Z, Alseekh S, Mühlenbock P, Hoeberichts FA, Huang J, Van Der Kelen K, Kangasjärvi J, Fernie AR, De Smet R, Van de Peer Y, Messens J, Van Breusegem F

(2016/07) -

DOI
1295. The ROS Wheel: Refining ROS Transcriptional Footprints.

Willems P, Mhamdi A, Stael S, Storme V, Kerchev P, Noctor G, Gevaert K, Van Breusegem F

(2016/07) -

DOI
1294. Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.

Vargas L, Cesarino I, Vanholme R, Voorend W, de Lyra Soriano Saleme M, Morreel K, Boerjan W

(2016/07) - Biotechnology for biofuels

DOI
1293. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases

Olivier Van Aken, Inge De Clercq, Aneta Ivanova, Simon R. Law, Frank Van Breusegem, A. Harvey Millar, James Whelan

(2016/07) - Plant Physiology

DOI
1292. RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.

Murphy E, Vu LD, Van den Broeck L, Lin Z, Ramakrishna P, van de Cotte B, Gaudinier A, Goh T, Slane D, Beeckman T, Inzé D, Brady SM, Fukaki H, De Smet I

(2016/07) - Journal of experimental botany

DOI
1291. Spreading the news: subcellular and organellar reactive oxygen species production and signalling.

Mignolet-Spruyt L, Xu E, Idänheimo N, Hoeberichts FA, Mühlenbock P, Brosché M, Van Breusegem F, Kangasjärvi J

(2016/06) -

DOI
1290. Sequence-Specific Protein Aggregation Generates Defined Protein Knockdowns in Plants.

Betti C, Vanhoutte I, Coutuer S, De Rycke R, Mishev K, Vuylsteke M, Aesaert S, Rombaut D, Gallardo R, De Smet F, Xu J, Van Lijsebettens M, Van Breusegem F, Inzé D, Rousseau F, Schymkowitz J, Russinova E

(2016/06) -

DOI
1289. The Response of the Root Proteome to the Synthetic Strigolactone GR24 in Arabidopsis.

Walton A, Stes E, Goeminne G, Braem L, Vuylsteke M, Matthys C, De Cuyper C, Staes A, Vandenbussche J, Boyer FD, Vanholme R, Fromentin J, Boerjan W, Goormachtig S

(2016/06) - Molecular & cellular proteomics : MCP

DOI
1288. Streptomyces as a plant's best friend?

Viaene T, Langendries S, Beirinckx S, Maes M, Goormachtig S

(2016/06) - FEMS microbiology ecology

DOI
1287. The Response of the Root Proteome to the Synthetic Strigolactone GR24 in Arabidopsis.

Walton A, Stes E, Goeminne G, Braem L, Vuylsteke M, Matthys C, De Cuyper C, Staes A, Vandenbussche J, Boyer FD, Vanholme R, Fromentin J, Boerjan W, Goormachtig S

(2016/06) - Molecular & cellular proteomics : MCP

DOI
1286. Functions and Regulation of Programmed Cell Death in Plant Development.

Daneva A, Gao Z, Van Durme M, Nowack MK

(2016/06) - Annual review of cell and developmental biology

DOI
1285. Epidermal Pavement Cells of Arabidopsis Have Chloroplasts.

Barton KA, Schattat MH, Jakob T, Hause G, Wilhelm C, Mckenna JF, Máthé C, Runions J, Van Damme D, Mathur J

(2016/06) - Plant physiology

DOI
1284. Mitochondrial uncouplers inhibit clathrin-mediated endocytosis largely through cytoplasmic acidification

Wim Dejonghe, Sabine Kuenen, Evelien Mylle, Mina Vasileva, Olivier Keech, Corrado Viotti, Jef Swerts, Matyáš Fendrych, Fausto Andres Ortiz-Morea, Kiril Mishev, Simon Delang, Stefan Scholl, Xavier Zarza, Mareike Heilmann, Jiorgos Kourelis, Jaroslaw Kasprowicz, Le Son Long Nguyen, Andrzej Drozdzecki, Isabelle Van Houtte, Anna-Mária Szatmári, Mateusz Majda, Gary Baisa, Sebastian York Bednarek, Stéphanie Robert, Dominique Audenaert, Christa Testerink, Teun Munnik, Daniël Van Damme, Ingo Heilmann, Karin Schumacher, Johan Winne, Jiří Friml, Patrik Verstreken, Eugenia Russinova

(2016/06) - Nature Communications

DOI
1283. Saponin determination, expression analysis and functional characterization of saponin biosynthetic genes in Chenopodium quinoa leaves.

Fiallos-Jurado J, Pollier J, Moses T, Arendt P, Barriga-Medina N, Morillo E, Arahana V, de Lourdes Torres M, Goossens A, Leon-Reyes A

(2016/06) - Plant science : an international journal of experimental plant biology

DOI
1282. Leaf growth in dicots and monocots: so different yet so alike.

Nelissen H, Gonzalez N, Inzé D

(2016/06) - Current opinion in plant biology

DOI
1281. CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis.

Roberts I, Smith S, Stes E, De Rybel B, Staes A, van de Cotte B, Njo MF, Dedeyne L, Demol H, Lavenus J, Audenaert D, Gevaert K, Beeckman T, De Smet I

(2016/06) - Journal of experimental botany

DOI
1280. The SBT6.1 subtilase processes the GOLVEN1 peptide controlling cell elongation.

Ghorbani S, Hoogewijs K, Pečenková T, Fernandez A, Inzé A, Eeckhout D, Kawa D, De Jaeger G, Beeckman T, Madder A, Van Breusegem F, Hilson P

(2016/06) - Journal of experimental botany

DOI
1279. Interaction between hormonal and mitochondrial signalling during growth, development and in plant defence responses.

Berkowitz O, De Clercq I, Van Breusegem F, Whelan J

(2016/05) -

DOI
1278. Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies.

Beckers B, Op De Beeck M, Thijs S, Truyens S, Weyens N, Boerjan W, Vangronsveld J

(2016/05) - Frontiers in microbiology

DOI
1277. A transgenic, visual screenable marker for soybean seeds

Lisa Kanizay, Thomas Jacobs, C. Nathan Hancock

(2016/04) - Transgenic Research

DOI
1276. High-throughput CRISPR Vector Construction and Characterization of DNA Modifications by Generation of Tomato Hairy Roots

Thomas B. Jacobs, Gregory B. Martin

(2016/04) - Journal of Visualized Experiments

DOI
1275. Identification of differentially expressed genes during lace plant leaf development

Rantong G, Van Der Kelen K, Van Breusegem F, Gunawardena AHLAN

(2016/04) - International Journal of Plant Sciences

DOI
1274. Maize Tricin-Oligolignol Metabolites and Their Implications for Monocot Lignification.

Lan W, Morreel K, Lu F, Rencoret J, Carlos Del Río J, Voorend W, Vermerris W, Boerjan W, Ralph J

(2016/04) - Plant physiology

DOI
1273. Jasmonates: signal transduction components and their roles in environmental stress responses.

Goossens J, Fernández-Calvo P, Schweizer F, Goossens A

(2016/04) - Plant molecular biology

DOI
1272. Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize.

Voorend W, Nelissen H, Vanholme R, De Vliegher A, Van Breusegem F, Boerjan W, Roldán-Ruiz I, Muylle H, Inzé D

(2016/03) -

DOI
1271. Kresoxim-methyl primes Medicago truncatula plants against abiotic stress factors via altered reactive oxygen and nitrogen species signalling leading to downstream transcriptional and metabolic readjustment.

Filippou P, Antoniou C, Obata T, Van Der Kelen K, Harokopos V, Kanetis L, Aidinis V, Van Breusegem F, Fernie AR, Fotopoulos V

(2016/03) -

DOI
1270. Interaction between hormonal and mitochondrial signalling during growth, development and in plant defence responses.

Berkowitz O, De Clercq I, Van Breusegem F, Whelan J

(2016/03) - Plant, Cell & Environment

DOI
1269. Differential Regulation of Clathrin and Its Adaptor Proteins during Membrane Recruitment for Endocytosis.

Wang C, Hu T, Yan X, Meng T, Wang Y, Wang Q, Zhang X, Gu Y, Sánchez-Rodríguez C, Gadeyne A, Lin J, Persson S, Van Damme D, Li C, Bednarek SY, Pan J

(2016/03) - Plant physiology

DOI
1268. Synthetic biology for production of natural and new-to-nature terpenoids in photosynthetic organisms.

Arendt P, Pollier J, Callewaert N, Goossens A

(2016/03) - The Plant journal : for cell and molecular biology

DOI
1267. Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize.

Voorend W, Nelissen H, Vanholme R, De Vliegher A, Van Breusegem F, Boerjan W, Roldán-Ruiz I, Muylle H, Inzé D

(2016/03) -

DOI
1266. Combined Large-Scale Phenotyping and Transcriptomics in Maize Reveals a Robust Growth Regulatory Network.

Baute J, Herman D, Coppens F, De Block J, Slabbinck B, Dell'Acqua M, Pè ME, Maere S, Nelissen H, Inzé D

(2016/03) -

DOI
1265. Genetic and hormonal control of vascular tissue proliferation.

Smet W, De Rybel B

(2016/02) -

DOI
1264. The Need to Understand GMO Opposition: Reply to Couée.

Blancke S, Van Breusegem F, De Jaeger G, Braeckman J, Van Montagu M

(2016/02) -

DOI
1263. Potential of genetically engineered hybrid poplar for pyrolytic production of bio-based phenolic compounds.

Toraman HE, Vanholme R, Borén E, Vanwonterghem Y, Djokic MR, Yildiz G, Ronsse F, Prins W, Boerjan W, Van Geem KM, Marin GB

(2016/02) - Bioresource technology

DOI
1262. EU Regulations Impede Market Introduction of GM Forest Trees.

Custers R, Bartsch D, Fladung M, Nilsson O, Pilate G, Sweet J, Boerjan W

(2016/02) - Trends in plant science

DOI
1261. Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms

Zhen Li, Jonas Defoort, Setareh Tasdighian, Steven Maere, Yves Van de Peer, Riet De Smet

(2016/02) - The Plant Cell

DOI
1260. The Whats, the Wheres and the Hows of strigolactone action in the roots.

Matthys C, Walton A, Struk S, Stes E, Boyer FD, Gevaert K, Goormachtig S

(2016/02) - Planta

DOI
1259. PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root

Kun Yue, Priyanka Sandal, Elisabeth L. Williams, Evan Murphy, Elisabeth Stes, Natalia Nikonorova, Priya Ramakrishna, Nathan Czyzewicz, Laura Montero-Morales, Robert Kumpf, Zhefeng Lin, Brigitte van de Cotte, Mudassar Iqbal, Michiel Van Bel, Eveline Van De Slijke, Matthew R. Meyer, Astrid Gadeyne, Cyril Zipfel, Geert De Jaeger, Marc Van Montagu, Daniël Van Damme, Kris Gevaert, A. Gururaj Rao, Tom Beeckman, Ive De Smet

(2016/02) - Proceedings of the National Academy of Sciences

DOI
1258. Targeted cell elimination reveals an auxin-guided biphasic mode of lateral root initiation.

Marhavý P, Montesinos JC, Abuzeineh A, Van Damme D, Vermeer JE, Duclercq J, Rakusová H, Nováková P, Friml J, Geldner N, Benková E

(2016/02) - Genes & development

DOI
1257. Lessons from Domestication: Targeting Cis-Regulatory Elements for Crop Improvement.

Swinnen G, Goossens A, Pauwels L

(2016/02) - Trends in plant science

DOI
1256. GAME9 regulates the biosynthesis of steroidal alkaloids and upstream isoprenoids in the plant mevalonate pathway.

Cárdenas PD, Sonawane PD, Pollier J, Vanden Bossche R, Dewangan V, Weithorn E, Tal L, Meir S, Rogachev I, Malitsky S, Giri AP, Goossens A, Burdman S, Aharoni A

(2016/02) - Nature communications

DOI
1255. PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root

Kun Yue, Priyanka Sandal, Elisabeth L. Williams, Evan Murphy, Elisabeth Stes, Natalia Nikonorova, Priya Ramakrishna, Nathan Czyzewicz, Laura Montero-Morales, Robert Kumpf, Zhefeng Lin, Brigitte van de Cotte, Mudassar Iqbal, Michiel Van Bel, Eveline Van De Slijke, Matthew R. Meyer, Astrid Gadeyne, Cyril Zipfel, Geert De Jaeger, Marc Van Montagu, Daniël Van Damme, Kris Gevaert, A. Gururaj Rao, Tom Beeckman, Ive De Smet

(2016/02) - Proceedings of the National Academy of Sciences

DOI
1254. Simple gene silencing using the trans‐acting siRNA pathway

Thomas B. Jacobs, Noah J. Lawler, Peter R. LaFayette, Lila O. Vodkin, Wayne A. Parrott

(2016/01) - Plant Biotechnology Journal

DOI
1253. Plant vascular development: from early specification to differentiation.

De Rybel B, Mähönen AP, Helariutta Y, Weijers D

(2016/01) -

DOI
1252. Cyclic programmed cell death stimulates hormone signaling and root development in Arabidopsis.

Xuan W, Band LR, Kumpf RP, Van Damme D, Parizot B, De Rop G, Opdenacker D, Möller BK, Skorzinski N, Njo MF, De Rybel B, Audenaert D, Nowack MK, Vanneste S, Beeckman T

(2016/01) -

DOI
1251. It’s Time for Some “Site”-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana

Alan Walton, Elisabeth Stes, Nicolas Cybulski, Michiel Van Bel, Sabrina Iñigo, Astrid Nagels Durand, Evy Timmerman, Jefri Heyman, Laurens Pauwels, Lieven De Veylder, Alain Goossens, Ive De Smet, Frederik Coppens, Sofie Goormachtig, Kris Gevaert

(2016/01) - The Plant Cell

DOI
1250. A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta.

Moeys S, Frenkel J, Lembke C, Gillard JT, Devos V, Van den Berge K, Bouillon B, Huysman MJ, De Decker S, Scharf J, Bones A, Brembu T, Winge P, Sabbe K, Vuylsteke M, Clement L, De Veylder L, Pohnert G, Vyverman W

(2016/01) - Scientific reports

DOI
1249. Lignin engineering in field-grown poplar trees affects the endosphere bacterial microbiome.

Beckers B, Op De Beeck M, Weyens N, Van Acker R, Van Montagu M, Boerjan W, Vangronsveld J

(2016/01) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1248. Designer lignins: harnessing the plasticity of lignification.

Mottiar Y, Vanholme R, Boerjan W, Ralph J, Mansfield SD

(2016/01) - Current opinion in biotechnology

DOI
1247. Combined large-scale phenotyping and transcriptomics in maize reveals a robust growth regulatory network

Joke Baute, Dorota Herman, Frederik Coppens, Jolien De Block, Bram Slabbinck, Matteo Dell'Aqcua, Mario Enrico Pè, Steven Maere, Hilde Nelissen, Dirk Inzé

(2016/01) - Plant Physiol.

DOI
1246. It’s Time for Some “Site”-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana

Alan Walton, Elisabeth Stes, Nicolas Cybulski, Michiel Van Bel, Sabrina Iñigo, Astrid Nagels Durand, Evy Timmerman, Jefri Heyman, Laurens Pauwels, Lieven De Veylder, Alain Goossens, Ive De Smet, Frederik Coppens, Sofie Goormachtig, Kris Gevaert

(2016/01) - The Plant Cell

DOI
1245. Diagonal chromatography to study plant protein modifications.

Walton A, Tsiatsiani L, Jacques S, Stes E, Messens J, Van Breusegem F, Goormachtig S, Gevaert K

(2016/01) - Biochimica et biophysica acta

DOI
1244. Cyclic programmed cell death stimulates hormone signaling and root development in Arabidopsis.

Xuan W, Band LR, Kumpf RP, Van Damme D, Parizot B, De Rop G, Opdenacker D, Möller BK, Skorzinski N, Njo MF, De Rybel B, Audenaert D, Nowack MK, Beeckman T

(2016/01) - Science (New York, N.Y.)

DOI
1243. Cyclic programmed cell death stimulates hormone signaling and root development in Arabidopsis.

Xuan W, Band LR, Kumpf RP, Van Damme D, Parizot B, De Rop G, Opdenacker D, Möller BK, Skorzinski N, Njo MF, De Rybel B, Audenaert D, Nowack MK, Beeckman T

(2016/01) - Science (New York, N.Y.)

DOI
1242. Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.

Colling J, Pollier J, Vanden Bossche R, Makunga NP, Pauwels L, Goossens A

(2016/01) - Plant signaling & behavior

DOI
1241. It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana.

Walton A, Stes E, Cybulski N, Van Bel M, Iñigo S, Durand AN, Timmerman E, Heyman J, Pauwels L, De Veylder L, Goossens A, De Smet I, Coppens F, Gevaert K

(2016/01) - The Plant cell

DOI
1240. Flux balance analysis of primary metabolism in the diatom Phaeodactylum tricornutum.

Kim J, Fabris M, Baart G, Kim MK, Goossens A, Vyverman W, Falkowski PG, Lun DS

(2016/01) - The Plant journal : for cell and molecular biology

DOI
1239. The Ubiquitin System and Jasmonate Signaling

Astrid Nagels Durand, Laurens Pauwels, Alain Goossens

(2016/01) - Plants

DOI
1238. The bHLH Transcription Factors TSAR1 and TSAR2 Regulate Triterpene Saponin Biosynthesis in Medicago truncatula

Jan Mertens, Jacob Pollier, Robin Vanden Bossche, Irene Lopez-Vidriero, José Manuel Franco-Zorrilla, Alain Goossens

(2016/01) - Plant Physiology

DOI
1237. Profiling of the Early Nitrogen Stress Response in the Diatom Phaeodactylum tricornutum Reveals a Novel Family of RING-Domain Transcription Factors

Michiel Matthijs, Michele Fabris, Stefan Broos, Wim Vyverman, Alain Goossens

(2016/01) - Plant Physiology

DOI
1236. Transcript profiling of jasmonate‐elicited Taxus cells reveals a β‐phenylalanine‐CoA ligase

Karla Ramírez‐Estrada, Teresa Altabella, Miriam Onrubia, Elisabeth Moyano, Cedric Notredame, Lidia Osuna, Robin Vanden Bossche, Alain Goossens, Rosa M. Cusido, Javier Palazon

(2016/01) - Plant Biotechnology Journal

DOI
1235. Cyclic programmed cell death stimulates hormone signaling and root development in Arabidopsis.

Xuan W, Band LR, Kumpf RP, Van Damme D, Parizot B, De Rop G, Opdenacker D, Möller BK, Skorzinski N, Njo MF, De Rybel B, Audenaert D, Nowack MK, Beeckman T

(2016/01) - Science (New York, N.Y.)

DOI
1234. Lateral Root Inducible System in Arabidopsis and Maize.

Crombez H, Roberts I, Vangheluwe N, Motte H, Jansen L, Beeckman T, Parizot B

(2016/01) - Journal of visualized experiments : JoVE

DOI
1233. Cell line name recognition in support of the identification of synthetic lethality in cancer from text

Kaewphan, S., Van Landeghem, S., Ohta, T., Van De Peer, Y., Ginter, F., Pyysalo, S.

(2016) - Bioinformatics

DOI
1232. Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat

Perazzolli, M., Herrero, N., Sterck, L., Lenzi, L., Pellegrini, A., Puopolo, G., Van de Peer, Y., Pertot, I.

(2016) - BMC Genomics

DOI
1231. The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

Olsen, J.L., Rouzé, P., Verhelst, B., Lin, Y.-C., Bayer, T., Collen, J., Dattolo, E., De Paoli, E., Dittami, S., Maumus, F., Michel, G., Kersting, A., Lauritano, C., Lohaus, R., Töpel, M., Tonon, T., Vanneste, K., Amirebrahimi, M., Brakel, J., Boström, C., Chovatia, M., Grimwood, J., Jenkins, J.W., Jueterbock, A., Mraz, A., Stam, W.T., Tice, H., Bornberg-Bauer, E., Green, P.J., Pearson, G.A., Procaccini, G., Duarte, C.M., Schmutz, J., Reusch, T.B.H., Van De Peer, Y.

(2016) - Nature

DOI
1230. The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution

Zhang, G.-Q., Xu, Q., Bian, C., Tsai, W.-C., Yeh, C.-M., Liu, K.-W., Yoshida, K., Zhang, L.-S., Chang, S.-B., Chen, F., Shi, Y., Su, Y.-Y., Zhang, Y.-Q., Chen, L.-J., Yin, Y., Lin, M., Huang, H., Deng, H., Wang, Z.-W., Zhu, S.-L., Zhao, X., Deng, C., Niu, S.-C., Huang, J., Wang, M., Liu, G.-H., Yang, H.-J., Xiao, X.-J., Hsiao, Y.-Y., Wu, W.-L., Chen, Y.-Y., Mitsuda, N., Ohme-Takagi, M., Luo, Y.-B., Van De Peer, Y., Liu, Z.-J.

(2016) - Scientific Reports

DOI
1229. RNA-sequencing of Cercospora beticola DMI-sensitive and -resistant isolates after treatment with tetraconazole identifies common and contrasting pathway induction

Bolton, M.D., Ebert, M.K., Faino, L., Rivera-Varas, V., de Jonge, R., Van de Peer, Y., Thomma, B.P.H.J., Secor, G.A.

(2016) - Fungal Genetics and Biology

DOI
1228. Of dups and dinos: Evolution at the K/Pg boundary

Lohaus, R., Van de Peer, Y.

(2016) - Current Opinion in Plant Biology

DOI
1227. Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts

Le, P.T., Makhalanyane, T.P., Guerrero, L.D., Vikram, S., De Peer, Y.V., Cowan, D.A.

(2016) - Genome Biology and Evolution

DOI
1226. Diffany: An ontology-driven framework to infer, visualise and analyse differential molecular networks

Landeghem, S.V., Parys, T.V., Dubois, M., Inzé, D., De Peer, Y.V.

(2016) - BMC Bioinformatics

DOI
1225. Editorial overview: Genome studies and molecular genetics: Of plant genes, genomes, and genomics

Van de Peer, Y., Pires, J.C.

(2016) - Current Opinion in Plant Biology

DOI
1224. Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae

Jelen, V., De Jonge, R., Van De Peer, Y., Javornik, B., Jakše, J.

(2016) - PLoS ONE

DOI
1223. hfAIM: A reliable bioinformatics approach for in silico genome-wide identification of autophagy-associated Atg8-interacting motifs in various organisms

Xie, Q., Tzfadia, O., Levy, M., Weithorn, E., Peled-Zehavi, H., Van Parys, T., Van de Peer, Y., Galili, G.

(2016) - Autophagy

DOI
1222. Complex evolutionary dynamics of massively expanded chemosensory receptor families in an extreme generalist chelicerate herbivore

Cao Thi Ngoc, P., Greenhalgh, R., Dermauw, W., Rombauts, S., Bajda, S., Zhurov, V., Grbić, M., Van de Peer, Y., Van Leeuwen, T., Rouzé, P., Clark, R.M.

(2016) - Genome Biology and Evolution

DOI
1221. CoExpNetViz: Comparative co-expression networks construction and visualization tool

Tzfadia, O., Diels, T., De Meyer, S., Vandepoele, K., Aharoni, A., Van De Peer, Y.

(2016) - Frontiers in Plant Science

DOI
1220. Jabba: Hybrid error correction for long sequencing reads

Miclotte, G., Heydari, M., Demeester, P., Rombauts, S., Van de Peer, Y., Audenaert, P., Fostier, J.

(2016) - Algorithms for Molecular Biology

DOI
1219. Emergent adaptive behaviour of GRN-controlled simulated robots in a changing environment

Yao, Y., Storme, V., Marchal, K., Van de Peer, Y.

(2016) - PeerJ

DOI
1218. Lack of GLYCOLATE OXIDASE1, but not GLYCOLATE OXIDASE2, attenuates the photorespiratory phenotype of CATALASE2-deficient Arabidopsis^1[OPEN]

Kerchev, P., Waszczak, C., Lewandowska, A., Willems, P., Shapiguzov, A., Li, Z., Alseekh, S., Mühlenbock, P., Hoeberichts, F.A., Huang, J., Van Der Kelen, K., Kangasjärvi, J., Fernie, A.R., De Smet, R., Van de Peer, Y., Messens, J., Van Breusegem, F.

(2016) - Plant Physiology

DOI
1217. Adaptive Self-Organizing Organisms Using A Bio-Inspired Gene Regulatory Network Controller

Yao Yao, Kathleen Marchal, Yves Van de Peer

(2016) - Handbook of Research on Design, Control, and Modeling of Swarm Robotics

DOI
1216. Potential Impacts of GM Trees on the Environment and on Plant “Omics”: Questionnaire-Based Responses

Stefano Biricolti, Detlef Bartsch, Wout Boerjan, Matthias Fladung, Debora C.M. Glandorf, Jeremy Sweet, Fernando Gallardo

(2016) - Biosafety of Forest Transgenic Trees

DOI
1215. Lessons from 25 Years of GM Tree Field Trials in Europe and Prospects for the Future

G. Pilate, I. Allona, W. Boerjan, A. Déjardin, M. Fladung, F. Gallardo, H. Häggman, S. Jansson, R. Van Acker, C. Halpin

(2016) - Biosafety of Forest Transgenic Trees

DOI
1214. Saccharification protocol for small-scale lignocellulosic biomass samples to test processing of cellulose into glucose

Van Acker R, Vanholme R, Piens K, Boerjan W

(2016) - Bio-protocol

No link available
1213. PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root

Yue, Kun, Sandal, Priyanka, Williams, Elisabeth L., Murphy, Evan, Stes, Elisabeth, Nikonorova, Natalia, Ramakrishna, Priya, Czyzewicz, Nathan, Montero-Morales, Laura, Kumpf, Robert, Lin, Zhefeng, van de Cotte, Brigitte, Iqbal, Mudassar, Van Bel, Michiel, Van De Slijke, Eveline, Meyer, Matthew R., Gadeyne, Astrid, Zipfel, Cyril, De Jaeger, Geert, Van Montagu, Marc, Van Damme, Daniel, Gevaert, Kris, Rao, A. Gururaj, Beeckman, Tom, De Smet, Ive

(2016) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1212. Plant peptides - taking them to the next level

De Coninck, B., De Smet, I.

(2016) - Journal of Experimental Botany

DOI
1211. It's Time for Some "Site"-Seeing: Novel Tools to Monitor the Ubiquitin Landscape in Arabidopsis thaliana

Walton, Alan, Stes, Elisabeth, Cybulski, Nicolas, Van Bel, Michiel, Inigo, Sabrina, Durand, Astrid Nagels, Timmerman, Evy, Heyman, Jefri, Pauwels, Laurens, De Veylder, Lieven, Goossens, Alain, De Smet, Ive, Coppens, Frederik, Goormachtig, Sofie, Gevaert, Kris

(2016) - Plant Cell

DOI
1210. Fine-Tuning Development Through Antagonistic Peptides: An Emerging Theme

Lee, J. S., De Smet, I.

(2016) - Trends in Plant Science

DOI
1209. Up-to-Date Workflow for Plant (Phospho)proteomics Identifies Differential Drought-Responsive Phosphorylation Events in Maize Leaves

Vu, L. D., Stes, E., Van Bel, M., Nelissen, H., Maddelein, D., Inze, D., Coppens, F., Martens, L., Gevaert, K., De Smet, I.

(2016) - Journal of Proteome Research

DOI
1208. The growing story of (ARABIDOPSIS) CRINKLY 4

Czyzewicz, N., Nikonorova, N., Meyer, M. R., Sandal, P., Shah, S., Vu, L. D., Gevaert, K., Rao, A. G., De Smet, I.

(2016) - Journal of Experimental Botany

DOI
1207. RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation

Murphy, E., Vu, L. D., Van den Broeck, L., Lin, Z. F., Ramakrishna, P., van de Cotte, B., Gaudinier, A., Goh, T., Slane, D., Beeckman, T., Inze, D., Brady, S. M., Fukaki, H., De Smet, I.

(2016) - Journal of Experimental Botany

DOI
1206. The Arabidopsis thaliana CLAVATA3/EMBRYO-SURROUNDING REGION 26 (CLE26) peptide is able to alter root architecture of Solanum lycopersicum and Brassica napus

Czyzewicz, Nathan, De Smet, Ive

(2016) - Plant Signaling & Behavior

DOI
1205. Down the Rabbit Hole-Carrots, Genetics and Art

Vergauwen, D., De Smet, I.

(2016) - Trends in Plant Science

DOI
1204. CEP5 and XIP1/CEPR1 regulate lateral root initiation in Arabidopsis

Roberts, I., Smith, S., Stes, E., De Rybel, B., Staes, A., van de Cotte, B., Njo, M. F., Dedeyne, L., Demol, H., Lavenus, J., Audenaert, D., Gevaert, K., Beeckman, T., De Smet, I.

(2016) - Journal of Experimental Botany

DOI
1203. Targeted genome modifications in soybean with CRISPR/Cas9

Thomas B Jacobs, Peter R LaFayette, Robert J Schmitz, Wayne A Parrott

(2015/12) - BMC Biotechnology

DOI
1202. A set of domain-specific markers in the Arabidopsis embryo.

Wendrich JR, Möller BK, Uddin B, Radoeva T, Lokerse AS, De Rybel B, Weijers D

(2015/12) -

DOI
1201. Comparative in silico analysis of SSRs in coding regions of high confidence predicted genes in Norway spruce (Picea abies) and Loblolly pine (Pinus taeda).

Ranade SS, Lin YC, Van de Peer Y, García-Gil MR

(2015/12) - BMC genetics

DOI
1200. Mechanisms Used by Plants to Cope with DNA Damage.

Hu Z, Cools T, De Veylder L

(2015/12) - Annual review of plant biology

DOI
1199. MicroRNA miR396 Regulates the Switch between Stem Cells and Transit-Amplifying Cells in Arabidopsis Roots

Ramiro E. Rodriguez, María Florencia Ercoli, Juan Manuel Debernardi, Natalie W. Breakfield, Martin A. Mecchia, Martin Sabatini, Toon Cools, Lieven De Veylder, Philip N. Benfey, Javier F. Palatnik

(2015/12) - The Plant Cell

DOI
1198. Mechanisms of developmentally controlled cell death in plants.

Van Durme M, Nowack MK

(2015/12) - Current opinion in plant biology

DOI
1197. A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.

Vera-Sirera F, De Rybel B, Úrbez C, Kouklas E, Pesquera M, Álvarez-Mahecha JC, Minguet EG, Tuominen H, Carbonell J, Borst JW, Weijers D, Blázquez MA

(2015/11) -

DOI
1196. Redox Strategies for Crop Improvement.

Kerchev P, De Smet B, Waszczak C, Messens J, Van Breusegem F

(2015/11) -

DOI
1195. Licensed to Kill: Mitochondria, Chloroplasts, and Cell Death.

Van Aken O, Van Breusegem F

(2015/11) -

DOI
1194. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development

Qian Chen, Yang Liu, Steven Maere, Eunkyoung Lee, Gert Van Isterdael, Zidian Xie, Wei Xuan, Jessica Lucas, Valya Vassileva, Saeko Kitakura, Peter Marhavý, Krzysztof Wabnik, Niko Geldner, Eva Benková, Jie Le, Hidehiro Fukaki, Erich Grotewold, Chuanyou Li, Jiří Friml, Fred Sack, Tom Beeckman, Steffen Vanneste

(2015/11) - Nat Comms

DOI
1193. Cytokinin response factors regulate PIN-FORMED auxin transporters

Mária Šimášková, José Antonio O’Brien, Mamoona Khan, Giel Van Noorden, Krisztina Ötvös, Anne Vieten, Inge De Clercq, Johanna Maria Adriana Van Haperen, Candela Cuesta, Klára Hoyerová, Steffen Vanneste, Peter Marhavý, Krzysztof Wabnik, Frank Van Breusegem, Moritz Nowack, Angus Murphy, Jiří Friml, Dolf Weijers, Tom Beeckman, Eva Benková

(2015/11) - Nature Communications

DOI
1192. Cytokinin response factors regulate PIN-FORMED auxin transporters.

Šimášková M, O'Brien JA, Khan M, Van Noorden G, Ötvös K, Vieten A, De Clercq I, Van Haperen JMA, Cuesta C, Hoyerová K, Vanneste S, Marhavý P, Wabnik K, Van Breusegem F, Nowack M, Murphy A, Friml J, Weijers D, Beeckman T, Benková E

(2015/11) - Nature Communications

DOI
1191. Aurora Kinases Throughout Plant Development.

Weimer AK, Demidov D, Lermontova I, Beeckman T, Van Damme D

(2015/11) - Trends in plant science

DOI
1190. Cytokinin response factors regulate PIN-FORMED auxin transporters

Mária Šimášková, José Antonio O’Brien, Mamoona Khan, Giel Van Noorden, Krisztina Ötvös, Anne Vieten, Inge De Clercq, Johanna Maria Adriana Van Haperen, Candela Cuesta, Klára Hoyerová, Steffen Vanneste, Peter Marhavý, Krzysztof Wabnik, Frank Van Breusegem, Moritz Nowack, Angus Murphy, Jiří Friml, Dolf Weijers, Tom Beeckman, Eva Benková

(2015/11) - Nature Communications

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1189. Transcriptional regulation of PIN genes by FOUR LIPS and MYB88 during Arabidopsis root gravitropism.

Wang HZ, Yang KZ, Zou JJ, Zhu LL, Xie ZD, Morita MT, Tasaka M, Friml J, Grotewold E, Beeckman T, Vanneste S, Sack F, Le J

(2015/11) - Nature Communications

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1188. A coherent transcriptional feed-forward motif model for mediating auxin-sensitive PIN3 expression during lateral root development

Qian Chen, Yang Liu, Steven Maere, Eunkyoung Lee, Gert Van Isterdael, Zidian Xie, Wei Xuan, Jessica Lucas, Valya Vassileva, Saeko Kitakura, Peter Marhavý, Krzysztof Wabnik, Niko Geldner, Eva Benková, Jie Le, Hidehiro Fukaki, Erich Grotewold, Chuanyou Li, Jiří Friml, Fred Sack, Tom Beeckman, Steffen Vanneste

(2015/11) - Nature Communications

DOI
1187. Aurora Kinases Throughout Plant Development.

Weimer AK, Demidov D, Lermontova I, Beeckman T, Van Damme D

(2015/11) - Trends in plant science

DOI
1186. Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennial Populus reveals 4‐coumarate:CoA ligase specificity and redundancy

Xiaohong Zhou, Thomas B. Jacobs, Liang‐Jiao Xue, Scott A. Harding, Chung‐Jui Tsai

(2015/10) - New Phytologist

DOI
1185. A conserved core of PCD indicator genes discriminates developmentally and environmentally induced programmed cell death in plants

Yadira Olvera-Carrillo, Michiel Van Bel, Tom Van Hautegem, Matyas Fendrych, Matthias Van Durme, Marlies Huysmans, Mária Šimášková, Pierre Buscaill, Susana Rivas, Nuria S. Coll, Steven Maere, Frederik Coppens, Moritz K Nowack

(2015/10) - Plant Physiol.

DOI
1184. Strigolactones spatially influence lateral root development through the cytokinin signaling network.

Jiang L, Matthys C, Marquez-Garcia B, De Cuyper C, Smet L, De Keyser A, Boyer FD, Beeckman T, Depuydt S, Goormachtig S

(2015/10) - Journal of Experimental Botany

DOI
1183. A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants.

Olvera-Carrillo Y, Van Bel M, Van Hautegem T, Fendrych M, Huysmans M, Simaskova M, van Durme M, Buscaill P, Rivas S, Coll NS, Coppens F, Maere S, Nowack MK

(2015/10) - Plant physiology

DOI
1182. Endomembrane trafficking overarching cell plate formation.

Boruc J, Van Damme D

(2015/10) - Current opinion in plant biology

DOI
1181. Strigolactones spatially influence lateral root development through the cytokinin signaling network.

Jiang L, Matthys C, Marquez-Garcia B, De Cuyper C, Smet L, De Keyser A, Boyer FD, Beeckman T, Depuydt S, Goormachtig S

(2015/10) - Journal of Experimental Botany

DOI
1180. Naturally p-Hydroxybenzoylated Lignins in Palms

Fachuang Lu, Steven D. Karlen, Matt Regner, Hoon Kim, Sally A. Ralph, Run-Cang Sun, Ken-ichi Kuroda, Mary Ann Augustin, Raymond Mawson, Henry Sabarez, Tanoj Singh, Gerardo Jimenez-Monteon, Sarani Zakaria, Stefan Hill, Philip J. Harris, Wout Boerjan, Curtis G. Wilkerson, Shawn D. Mansfield, John Ralph

(2015/09) - BioEnergy Research

DOI
1179. Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize.

Voorend W, Nelissen H, Vanholme R, De Vliegher A, Van Breusegem F, Boerjan W, Roldán-Ruiz I, Muylle H, Inzé D

(2015/09) - Plant biotechnology journal

DOI
1178. Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population

Joke Baute, Dorota Herman, Frederik Coppens, Jolien De Block, Bram Slabbinck, Matteo Dell’Acqua, Mario Enrico Pè, Steven Maere, Hilde Nelissen, Dirk Inzé

(2015/09) - Genome Biol

DOI
1177. RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture

Gokhan Kir, Huaxun Ye, Hilde Nelissen, Anjanasree K. Neelakandan, Andree S. Kusnandar, Anding Luo, Dirk Inzé, Anne W. Sylvester, Yanhai Yin, Philip W. Becraft

(2015/09) - Plant Physiology

DOI
1176. Calcium is an organizer of cell polarity in plants

Ellie Himschoot, Tom Beeckman, Jiří Friml, Steffen Vanneste

(2015/09) - Biochimica et Biophysica Acta (BBA) - Molecular Cell Research

DOI
1175. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.

Khong GN, Pati PK, Richaud F, Parizot B, Bidzinski P, Mai CD, Bès M, Bourrié I, Meynard D, Beeckman T, Selvaraj MG, Manabu I, Genga AM, Brugidou C, Nang Do V, Guiderdoni E, Morel JB, Gantet P

(2015/09) - Plant Physiology

DOI
1174. Arabidopsis COPPER MODIFIED RESISTANCE1/PATRONUS1 is essential for growth adaptation to stress and required for mitotic onset control.

Juraniec M, Heyman J, Schubert V, Salis P, De Veylder L, Verbruggen N

(2015/08) -

DOI
1173. Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes.

Verkest A, Byzova M, Martens C, Willems P, Verwulgen T, Slabbinck B, Rombaut D, Van de Velde J, Vandepoele K, Standaert E, Peeters M, Van Lijsebettens M, Van Breusegem F, De Block M

(2015/08) -

DOI
1172. Reductive lignocellulose fractionation into soluble lignin-derived phenolic monomers and dimers and processable carbohydrate pulps

Van den Bosch S, Schutyser W, Vanholme R, Driessen T, Koelewijn S-F, Renders T, De Meester B, Huijgen WJJ, Dehaen W, Courtin CM, Lagraina B, Boerjan W, Sels BF

(2015/08) - Energy & Environmental Science

DOI
1171. Introduction of chemically labile substructures into Arabidopsis lignin through the use of LigD, the Cα‐dehydrogenase from Sphingobium sp. strain SYK‐6

Yukiko Tsuji, Ruben Vanholme, Yuki Tobimatsu, Yasuyuki Ishikawa, Clifton E. Foster, Naofumi Kamimura, Shojiro Hishiyama, Saki Hashimoto, Amiu Shino, Hirofumi Hara, Kanna Sato‐Izawa, Paula Oyarce, Geert Goeminne, Kris Morreel, Jun Kikuchi, Toshiyuki Takano, Masao Fukuda, Yoshihiro Katayama, Wout Boerjan, John Ralph, Eiji Masai, Shinya Kajita

(2015/08) - Plant Biotechnology Journal

DOI
1170. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.

Stes E, Depuydt S, De Keyser A, Matthys C, Audenaert K, Yoneyama K, Werbrouck S, Goormachtig S, Vereecke D

(2015/08) -

DOI
1169. Developing 3D SEM in a broad biological context

A. KREMER, S. LIPPENS, S. BARTUNKOVA, B. ASSELBERGH, C. BLANPAIN, M. FENDRYCH, A. GOOSSENS, M. HOLT, S. JANSSENS, M. KROLS, J.‐C. LARSIMONT, C. Mc GUIRE, M.K. NOWACK, X. SAELENS, A. SCHERTEL, B. SCHEPENS, M. SLEZAK, V. TIMMERMAN, C. THEUNIS, R. VAN BREMPT, Y. VISSER, C.J. GUÉRIN

(2015/08) - Journal of Microscopy

DOI
1168. A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis

Nathalie Gonzalez, Laurens Pauwels, Alexandra Baekelandt, Liesbeth De Milde, Jelle Van Leene, Nienke Besbrugge, Ken S. Heyndrickx, Amparo Cuéllar Pérez, Astrid Nagels Durand, Rebecca De Clercq, Eveline Van De Slijke, Robin Vanden Bossche, Dominique Eeckhout, Kris Gevaert, Klaas Vandepoele, Geert De Jaeger, Alain Goossens, Dirk Inzé

(2015/08) - The Plant Cell

DOI
1167. Overexpression of theArabidopsis thalianasignalling peptide TAXIMIN1 affects lateral organ development

Janine Colling, Takayuki Tohge, Rebecca De Clercq, Geraldine Brunoud, Teva Vernoux, Alisdair R. Fernie, Nokwanda P. Makunga, Alain Goossens, Laurens Pauwels

(2015/08) - Journal of Experimental Botany

DOI
1166. The RING E3 Ligase KEEP ON GOING Modulates JASMONATE ZIM-DOMAIN12 Stability.

Pauwels L, Ritter A, Goossens J, Durand AN, Liu H, Gu Y, Geerinck J, Boter M, Boter M, Vanden Bossche R, De Clercq R, Van Leene J, Gevaert K, Goossens A

(2015/08) - Plant physiology

DOI
1165. Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays

Sarieh Ghorbani, Yao-Cheng Lin, Boris Parizot, Ana Fernandez, Maria Fransiska Njo, Yves Van de Peer, Tom Beeckman, Pierre Hilson

(2015/08) - Journal of Experimental Botany

DOI
1164. The GLV6/RGF8/CLEL2 peptide regulates early pericycle divisions during lateral root initiation

Ana Fernandez, Andrzej Drozdzecki, Kurt Hoogewijs, Valya Vassileva, Annemieke Madder, Tom Beeckman, Pierre Hilson

(2015/08) - Journal of Experimental Botany

DOI
1163. Fatal attraction: the intuitive appeal of GMO opposition.

Blancke S, Van Breusegem F, De Jaeger G, Braeckman J, Van Montagu M

(2015/07) -

DOI
1162. Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne

F. R. D. van Parijs, T. Ruttink, W. Boerjan, G. Haesaert, S. L. Byrne, T. Asp, I. Roldán‐Ruiz, H. Muylle

(2015/07) - Plant Biology

DOI
1161. From lateral root density to nodule number, the strigolactone analogue GR24 shapes the root architecture of Medicago truncatula.

De Cuyper C, Fromentin J, Yocgo RE, De Keyser A, Guillotin B, Kunert K, Boyer FD, Goormachtig S

(2015/07) -

DOI
1160. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis

Ikeuchi M, Iwase A, Rymen B, Harashima H, Shibata M, Ohnuma M, Breuer C, Morao AK, de Lucas M, De Veylder L, Goodrich J, Brady SM, Roudier F, Sugimoto K

(2015/06) - Nature Plants

DOI
1159. PtaRHE1, a Populus tremula × Populus alba RING‐H2 protein of the ATL family, has a regulatory role in secondary phloem fibre development

Fabien Baldacci‐Cresp, Jihad Moussawi, Jean‐Charles Leplé, Rebecca Van Acker, Annegret Kohler, Julie Candiracci, Laure Twyffels, Antanas V. Spokevicius, Gerd Bossinger, Françoise Laurans, Nicole Brunel, Marjorie Vermeersch, Wout Boerjan, Mondher El Jaziri, Marie Baucher

(2015/06) - The Plant Journal

DOI
1158. Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf.

Nelissen H, Eeckhout D, Demuynck K, Persiau G, Walton A, van Bel M, Vervoort M, Candaele J, De Block J, Aesaert S, Van Lijsebettens M, Goormachtig S, Vandepoele K, Van Leene J, Muszynski M, Gevaert K, Inzé D, De Jaeger G

(2015/06) -

DOI
1157. The root cap: a short story of life and death.

Kumpf RP, Nowack MK

(2015/06) - Journal of experimental botany

DOI
1156. GAP Activity, but Not Subcellular Targeting, Is Required for Arabidopsis RanGAP Cellular and Developmental Functions.

Boruc J, Griffis AH, Rodrigo-Peiris T, Zhou X, Tilford B, Van Damme D, Meier I

(2015/06) - The Plant cell

DOI
1155. Multilayered Organization of Jasmonate Signalling in the Regulation of Root Growth

Debora Gasperini, Aurore Chételat, Ivan F. Acosta, Jonas Goossens, Laurens Pauwels, Alain Goossens, René Dreos, Esteban Alfonso, Edward E. Farmer

(2015/06) - PLOS Genetics

DOI
1154. Change of a conserved amino acid in the MYC2 and MYC3 transcription factors leads to release of JAZ repression and increased activity

Jonas Goossens, Gwen Swinnen, Robin Vanden Bossche, Laurens Pauwels, Alain Goossens

(2015/06) - New Phytologist

DOI
1153. The bHLH transcription factor BIS1 controls the seco-iridoid branch of the monoterpenoid indole alkaloid pathway in Catharanthus roseus

No contributors listed

(2015/06) - Proceedings of the National Academy of Sciences of the United States of America

DOI
1152. Dynamic Changes in ANGUSTIFOLIA3 Complex Composition Reveal a Growth Regulatory Mechanism in the Maize Leaf

Hilde Nelissen, Dominique Eeckhout, Kirin Demuynck, Geert Persiau, Alan Walton, Michiel van Bel, Marieke Vervoort, Jasper Candaele, Jolien De Block, Stijn Aesaert, Mieke Van Lijsebettens, Sofie Goormachtig, Klaas Vandepoele, Jelle Van Leene, Michael Muszynski, Kris Gevaert, Dirk Inzé, Geert De Jaeger

(2015/06) - The Plant Cell

DOI
1151. Ethylene-Mediated Regulation of A2-Type CYCLINs Modulates Hyponastic Growth in Arabidopsis.

Polko JK, van Rooij JA, Vanneste S, Pierik R, Ammerlaan AM, Vergeer-van Eijk MH, McLoughlin F, Gühl K, Van Isterdael G, Voesenek LA, Millenaar FF, Beeckman T, Peeters AJ, Marée AF, van Zanten M

(2015/06) - Plant Physiology

DOI
1150. Root Cap-Derived Auxin Pre-patterns the Longitudinal Axis of the Arabidopsis Root.

Xuan W, Audenaert D, Parizot B, Möller BK, Njo MF, De Rybel B, De Rop G, Van Isterdael G, Mähönen AP, Vanneste S, Beeckman T

(2015/05) -

DOI
1149. Root Cap-Derived Auxin Pre-patterns the Longitudinal Axis of the Arabidopsis Root.

Xuan W, Audenaert D, Parizot B, Möller BK, Njo MF, De Rybel B, De Rop G, Van Isterdael G, Mähönen AP, Vanneste S, Beeckman T

(2015/05) - Current Biology

DOI
1148. Small Glycosylated Lignin Oligomers Are Stored in Arabidopsis Leaf Vacuoles

Oana Dima, Kris Morreel, Bartel Vanholme, Hoon Kim, John Ralph, Wout Boerjan

(2015/04) - The Plant Cell

DOI
1147. HtStuf: High‐Throughput Sequencing to Locate Unknown DNA Junction Fragments

Lisa B. Kanizay, Thomas B. Jacobs, Kevin Gillespie, Jade A. Newsome, Brittany N. Spaid, Wayne A. Parrott

(2015/03) - The Plant Genome

DOI
1146. Compositions and methods of gene silencing in plants

Jacobs, Thomas B, Parrott, Wayne A, Vodkin, Lila O

(2015/03) -

No link available
1145. ARACINs, Brassicaceae-Specific Peptides Exhibiting Antifungal Activities against Necrotrophic Pathogens in Arabidopsis.

Neukermans J, Inzé A, Mathys J, De Coninck B, van de Cotte B, Cammue BP, Van Breusegem F

(2015/03) -

DOI
1144. GROWTH REGULATING FACTOR5 Stimulates Arabidopsis Chloroplast Division, Photosynthesis, and Leaf Longevity.

Vercruyssen L, Tognetti VB, Gonzalez N, Van Dingenen J, De Milde L, Bielach A, De Rycke R, Van Breusegem F, Inzé D

(2015/03) -

DOI
1143. Cysteines under ROS attack in plants: a proteomics view.

Akter S, Huang J, Waszczak C, Jacques S, Gevaert K, Van Breusegem F, Messens J

(2015/03) -

DOI
1142. Oxidative post-translational modifications of cysteine residues in plant signal transduction.

Waszczak C, Akter S, Jacques S, Huang J, Messens J, Van Breusegem F

(2015/03) -

DOI
1141. Tricin, a Flavonoid Monomer in Monocot Lignification

Wu Lan, Fachuang Lu, Matthew Regner, Yimin Zhu, Jorge Rencoret, Sally A. Ralph, Uzma I. Zakai, Kris Morreel, Wout Boerjan, John Ralph

(2015/03) - Plant Physiology

DOI
1140. Plant hormone signalling through the eye of the mass spectrometer.

Walton A, Stes E, De Smet I, Goormachtig S, Gevaert K

(2015/03) -

DOI
1139. Cell cycle entry, maintenance, and exit during plant development.

Polyn S, Willems A, De Veylder L

(2015/02) -

DOI
1138. Protein methionine sulfoxide dynamics in Arabidopsis thaliana under oxidative stress.

Jacques S, Ghesquière B, De Bock PJ, Demol H, Wahni K, Willems P, Messens J, Van Breusegem F, Gevaert K

(2015/02) -

DOI
1137. DYn-2 based identification of Arabidopsis sulfenomes.

Akter S, Huang J, Bodra N, De Smet B, Wahni K, Rombaut D, Pauwels J, Gevaert K, Carroll K, Van Breusegem F, Messens J

(2015/02) -

DOI
1136. Activation of auxin signalling counteracts photorespiratory H2O2-dependent cell death

Kerchev P, Mühlenbock P, Denecker J, Morreel K, Hoeberichts FA, Van Der Kelen K, Vandorpe M, Nguyen L, Audenaert D, Van Breusegem F

(2015/02) - Plant, Cell & Environment

DOI
1135. Photopolarization of Fucus zygotes is determined by time sensitive vectorial addition of environmental cues during axis amplification

Kenny A. Bogaert, Tom Beeckman, Olivier De Clerck

(2015/02) - Frontiers in Plant Science

DOI
1134. The genome sequence of the orchid Phalaenopsis equestris

Jing Cai, Xin Liu, Kevin Vanneste, Sebastian Proost, Wen-Chieh Tsai, Ke-Wei Liu, Li-Jun Chen, Ying He, Qing Xu, Chao Bian, Zhijun Zheng, Fengming Sun, Weiqing Liu, Yu-Yun Hsiao, Zhao-Jun Pan, Chia-Chi Hsu, Ya-Ping Yang, Yi-Chin Hsu, Yu-Chen Chuang, Anne Dievart, Jean-Francois Dufayard, Xun Xu, Jun-Yi Wang, Jun Wang, Xin-Ju Xiao, Xue-Min Zhao, Rong Du, Guo-Qiang Zhang, Meina Wang, Yong-Yu Su, Gao-Chang Xie, Guo-Hui Liu, Li-Qiang Li, Lai-Qiang Huang, Yi-Bo Luo, Hong-Hwa Chen, Yves Van de Peer, Zhong-Jian Liu

(2015/01) - Nature Genetics

DOI
1133. Deficiency of the Arabidopsis helicase RTEL1 triggers a SOG1-dependent replication checkpoint in response to DNA cross-links.

Hu Z, Cools T, Kalhorzadeh P, Heyman J, De Veylder L

(2015/01) -

DOI
1132. Plant innate immunity--sunny side up?

Stael S, Kmiecik P, Willems P, Van Der Kelen K, Coll NS, Teige M, Van Breusegem F

(2015/01) -

DOI
1131. GRIM REAPER peptide binds to receptor kinase PRK5 to trigger cell death in Arabidopsis.

Wrzaczek M, Vainonen JP, Stael S, Tsiatsiani L, Help-Rinta-Rahko H, Gauthier A, Kaufholdt D, Bollhöner B, Lamminmäki A, Staes A, Gevaert K, Tuominen H, Van Breusegem F, Helariutta Y, Kangasjärvi J

(2015/01) -

DOI
1130. Zeatin modulates flower bud development and tocopherol levels in Cistus albidus (L.) plants as they age

Hernández I, Miret JA, Van Der Kelen K, Rombaut D, Van Breusegem F, Munné-Bosch S

(2015/01) - Plant Biology

DOI
1129. Carbon isotope compositions (δ¹³C) of leaf, wood and holocellulose differ among genotypes of poplar and between previous land uses in a short‐rotation biomass plantation

M. S. VERLINDEN, R. FICHOT, L. S. BROECKX, B. VANHOLME, W. BOERJAN, R. CEULEMANS

(2015/01) - Plant, Cell & Environment

DOI
1128. From lateral root density to nodule number, the strigolactone analogue GR24 shapes the root architecture of Medicago truncatula.

De Cuyper C, Fromentin J, Yocgo RE, De Keyser A, Guillotin B, Kunert K, Boyer FD, Goormachtig S

(2015/01) -

DOI
1127. OSC2 and CYP716A14v2 Catalyze the Biosynthesis of Triterpenoids for the Cuticle of Aerial Organs of Artemisia annua

Tessa Moses, Jacob Pollier, Qian Shen, Sandra Soetaert, James Reed, Marie-Laure Erffelinck, Filip C.W. Van Nieuwerburgh, Robin Vanden Bossche, Anne Osbourn, Johan M. Thevelein, Dieter Deforce, Kexuan Tang, Alain Goossens

(2015/01) - The Plant Cell

DOI
1126. Unraveling the Triterpenoid Saponin Biosynthesis of the African Shrub Maesa lanceolata

Tessa Moses, Jacob Pollier, Ahmad Faizal, Sandra Apers, Luc Pieters, Johan M. Thevelein, Danny Geelen, Alain Goossens

(2015/01) - Molecular Plant

DOI
1125. Developing 3D SEM in a broad biological context.

Kremer A, Lippens S, Bartunkova S, Asselbergh B, Blanpain C, Fendrych M, Goossens A, Holt M, Janssens S, Krols M, Larsimont JC, Mc Guire C, Nowack MK, Saelens X, Schertel A, Schepens B, Slezak M, Timmerman V, Theunis C, VAN Brempt R, Visser Y, Guérin CJ

(2015/01) - Journal of Microscopy

DOI
1124. Iridoid synthase activity is common among the plant progesterone 5β-reductase family.

Munkert J, Pollier J, Miettinen K, Van Moerkercke A, Payne R, Müller-Uri F, Burlat V, O'Connor SE, Memelink J, Kreis W, Goossens A

(2015/01) -

DOI
1123. It is easy to get huge candidate gene lists for plant metabolism now, but how to get beyond?

Goossens A

(2015/01) -

DOI
1122. Ligation-independent cloning for plant research.

Wendrich JR, Liao CY, van den Berg WA, De Rybel B, Weijers D

(2015) -

DOI
1121. Life's dual nature: A way out of the impasse of the gene-centred 'versus' complex systems controversy on life

De Tiège, A., Tanghe, K.B., Braeckman, J., Van De Peer, Y.

(2015) - Evolutionary Biology: Biodiversification from Genotype to Phenotype

DOI
1120. The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

Szakonyi, D., Van Landeghem, S., Baerenfaller, K., Baeyens, L., Blomme, J., Casanova-Sáez, R., De Bodt, S., Esteve-Bruna, D., Fiorani, F., Gonzalez, N., Grønlund, J., Immink, R.G.H., Jover-Gil, S., Kuwabara, A., Muñoz-Nortes, T., van Dijk, A.D.J., Wilson-Sánchez, D., Buchanan-Wollaston, V., Angenent, G.C., Van de Peer, Y., Inzé, D., Micol, J.L., Gruissem, W., Walsh, S., Hilson, P.

(2015) - Current Plant Biology

DOI
1119. Genome-wide mapping of structural variations reveals a copy number variant that determines reproductive morphology in cucumber

Zhang, Z., Mao, L., Chen, H., Bu, F., Li, G., Sun, J., Li, S., Sun, H., Jiao, C., Blakely, R., Pan, J., Cai, R., Luo, R., Van de Peer, Y., Jacobsen, E., Fei, Z., Huang, S.

(2015) - Plant Cell

DOI
1118. Gene duplicability of core genes is highly consistent across all angiosperms

Li, Z., Defoort, J., Tasdighian, S., Maere, S., Van De Peer, Y., De Smet, R.

(2015) - Plant Cell

DOI
1117. Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays

Ghorbani, S., Lin, Y.-C., Parizot, B., Fernandez, A., Njo, M.F., Van De Peer, Y., Beeckman, T., Hilson, P.

(2015) - Journal of Experimental Botany

DOI
1116. Serendipitous meta-transcriptomics: The fungal community of Norway spruce (Picea abies)

Delhomme, N., Sundström, G., Zamani, N., Lantz, H., Lin, Y.-C., Hvidsten, T.R., Höppner, M.P., Jern, P., Van De Peer, Y., Lundeberg, J., Grabherr, M.G., Street, N.R.

(2015) - PLoS ONE

DOI
1115. Comparative phenomics and targeted use of genomics reveals variation in carbon and nitrogen assimilation among different Brettanomyces bruxellensis strains

Crauwels, S., Van Assche, A., de Jonge, R., Borneman, A.R., Verreth, C., Troels, P., De Samblanx, G., Marchal, K., Van de Peer, Y., Willems, K.A., Verstrepen, K.J., Curtin, C.D., Lievens, B.

(2015) - Applied Microbiology and Biotechnology

DOI
1114. The Plant Genome Integrative Explorer Resource: PlantGenIE.org

Sundell, D., Mannapperuma, C., Netotea, S., Delhomme, N., Lin, Y.-C., Sjödin, A., Van de Peer, Y., Jansson, S., Hvidsten, T.R., Street, N.R.

(2015) - New Phytologist

DOI
1113. Exploration of alternative splicing events in ten different grapevine cultivars

Potenza, E., Racchi, M.L., Sterck, L., Coller, E., Asquini, E., Tosatto, S.C.E., Velasco, R., Van de Peer, Y., Cestaro, A.

(2015) - BMC Genomics

DOI
1112. Horsetails are ancient polyploids: Evidence from Equisetum giganteum

Vanneste, K., Sterck, L., Myburg, A.A., Van de Peer, Y., Mizrachi, E.

(2015) - Plant Cell

DOI
1111. Genome-wide analysis reveals diverged patterns of codon bias, gene expression, and rates of sequence evolution in Picea gene families

De La Torre, A.R., Lin, Y.-C., Van De Peer, Y., Ingvarsson, P.K.

(2015) - Genome Biology and Evolution

DOI
1110. Polyploidy and genome evolution in plants

Soltis, P.S., Marchant, D.B., Van de Peer, Y., Soltis, D.E.

(2015) - Current Opinion in Genetics and Development

DOI
1109. PLAZA 3.0: An access point for plant comparative genomics

Proost, S., Bel, M.V., Vaneechoutte, D., Van De Peer, Y., Inzé, D., Mueller-Roeber, B., Vandepoele, K.

(2015) - Nucleic Acids Research

DOI
1108. Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis

Hakala, K., Van Landeghem, S., Salakoski, T., Van de Peer, Y., Ginter, F.

(2015) - BMC Bioinformatics

DOI
1107. Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Morel, G., Sterck, L., Swennen, D., Marcet-Houben, M., Onesime, D., Levasseur, A., Jacques, N., Mallet, S., Couloux, A., Labadie, K., Amselem, J., Beckerich, J.-M., Henrissat, B., Van De Peer, Y., Wincker, P., Souciet, J.-L., Gabaldón, T., Tinsley, C.R., Casaregola, S.

(2015) - Scientific Reports

DOI
1106. Lack of RNase H2 activity rescues HU-sensitivity of WEE1 deficient plants.

Eekhout T, Kalhorzadeh P, De Veylder L

(2015) -

DOI
1105. Functional characterization of the diatom cyclin-dependent kinase A2 as a mitotic regulator reveals plant-like properties in a non-green lineage.

Huysman MJ, Tanaka A, Bowler C, Vyverman W, De Veylder L

(2015) -

DOI
1104. Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta.

Patil S, Moeys S, von Dassow P, Huysman MJ, Mapleson D, De Veylder L, Sanges R, Vyverman W, Montresor M, Ferrante MI

(2015) -

DOI
1103. Cytokinin response factors regulate PIN-FORMED auxin transporters.

Šimášková M, O'Brien JA, Khan M, Van Noorden G, Ötvös K, Vieten A, De Clercq I, Van Haperen JM, Cuesta C, Hoyerová K, Vanneste S, Marhavý P, Wabnik K, Van Breusegem F, Nowack M, Murphy A, Friml J, Weijers D, Beeckman T, Benková E

(2015) -

DOI
1102. The Plant Peptidome: An Expanding Repertoire of Structural Features and Biological Functions

Tavormina, Patrizia, De Coninck, Barbara, Nikonorova, Natalia, De Smet, Ive, Cammue, Bruno P. A.

(2015) - Plant Cell

DOI
1101. Plant hormone signalling through the eye of the mass spectrometer

Walton, Alan, Stes, Elisabeth, De Smet, Ive, Goormachtig, Sofie, Gevaert, Kris

(2015) - Proteomics

DOI
1100. Phosphoproteomics-based peptide ligand-receptor kinase pairing. Commentary on: "A peptide hormone and its receptor protein kinase regulate plant cell expansion"

Stes, Elisabeth, Gevaert, Kris, De Smet, Iye

(2015) - Frontiers in Plant Science

DOI
1099. Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide

Czyzewicz, Nathan, Shi, Chun-Lin, Vu, Lam Dai, Van De Cotte, Brigitte, Hodgman, Charlie, Butenko, Melinka A., De Smet, Ive

(2015) - Journal of Experimental Botany

DOI
1098. Antagonistic peptide technology for functional dissection of CLE peptides revisited

Czyzewicz, Nathan, Wildhagen, Mari, Cattaneo, Pietro, Stahl, Yvonne, Pinto, Karine Gustavo, Aalen, Reidunn B., Butenko, Melinka A., Simon, Ruediger, Hardtke, Christian S., De Smet, Ive

(2015) - Journal of Experimental Botany

DOI
1097. A phylogenetic approach to study the origin and evolution of the CRINKLY4 family

Nikonorova, Natalia, Vu, Lam D., Czyzewicz, Nathan, Gevaert, Kris, De Smet, Ive

(2015) - Frontiers in Plant Science

DOI
1096. Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population.

Baute J, Herman D, Coppens F, De Block J, Slabbinck B, Dell'Acqua M, Pè ME, Maere S, Nelissen H, Inzé D

(2015) -

DOI
1095. Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays.

Dell'Acqua M, Gatti DM, Pea G, Cattonaro F, Coppens F, Magris G, Hlaing AL, Aung HH, Nelissen H, Baute J, Frascaroli E, Churchill GA, Inzé D, Morgante M, Pè ME

(2015) -

DOI
1094. Transverse Sectioning of Arabidopsis thaliana Leaves Using Resin Embedding

Shweta Kalve, Kumud Saini, Kris Vissenberg, Tom Beeckman, Gerrit Beemster

(2015) - BIO-PROTOCOL

DOI
1093. Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.

Vermeirssen V, De Clercq I, Van Parys T, Van Breusegem F, Van de Peer Y

(2014/12) -

DOI
1092. Bioethanol from poplar: a commercially viable alternative to fossil fuel in the European Union

Jade Littlewood, Miao Guo, Wout Boerjan, Richard J Murphy

(2014/12) - Biotechnology for Biofuels

DOI
1091. Ectopic Lignification in the Flax lignified bast fiber1 Mutant Stem Is Associated with Tissue-Specific Modifications in Gene Expression and Cell Wall Composition

Maxime Chantreau, Antoine Portelette, Rebecca Dauwe, Shingo Kiyoto, David Crônier, Kris Morreel, Sandrine Arribat, Godfrey Neutelings, Malika Chabi, Wout Boerjan, Arata Yoshinaga, François Mesnard, Sebastien Grec, Brigitte Chabbert, Simon Hawkins

(2014/12) - The Plant Cell

DOI
1090. Mutation of the Inducible ARABIDOPSIS THALIANA CYTOCHROME P450 REDUCTASE2 Alters Lignin Composition and Improves Saccharification

Lisa Sundin, Ruben Vanholme, Jan Geerinck, Geert Goeminne, René Höfer, Hoon Kim, John Ralph, Wout Boerjan

(2014/12) - Plant Physiology

DOI
1089. Side by side comparison of chemical compounds generated by aqueous pretreatments of maize stover, miscanthus and sugarcane bagasse

Gómez LD, Vanholme R, Bird S, Goeminne G, Trindade LM, Polikarpov I, Simister R, Morreel K, Boerjan W, McQueen-Mason SJ

(2014/12) - BioEnergy Research

DOI
1088. Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.

Vermeirssen V, De Clercq I, Van Parys T, Van Breusegem F, Van de Peer Y

(2014/12) - The Plant Cell

DOI
1087. Comparative analysis of CYP93E proteins for improved microbial synthesis of plant triterpenoids

Tessa Moses, Johan M. Thevelein, Alain Goossens, Jacob Pollier

(2014/12) - Phytochemistry

DOI
1086. Three-dimensional patterns of cell division and expansion throughout the development of Arabidopsis thaliana leaves

S. Kalve, J. Fotschki, T. Beeckman, K. Vissenberg, G. T. S. Beemster

(2014/12) - Journal of Experimental Botany

DOI
1085. The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana.

Zhang B, Van Aken O, Thatcher L, De Clercq I, Duncan O, Law SR, Murcha MW, van der Merwe M, Seifi HS, Carrie C, Cazzonelli C, Radomiljac J, Höfte M, Singh KB, Van Breusegem F, Whelan J

(2014/11) -

DOI
1084. Only in dying, life: programmed cell death during plant development.

Van Hautegem T, Waters AJ, Goodrich J, Nowack MK

(2014/11) - Trends in plant science

DOI
1083. The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana.

Zhang B, Van Aken O, Thatcher L, De Clercq I, Duncan O, Law SR, Murcha MW, van der Merwe M, Seifi HS, Carrie C, Cazzonelli C, Radomiljac J, Höfte M, Singh KB, Van Breusegem F, Whelan J

(2014/11) - The Plant Journal

DOI
1082. A rational approach to improving the biotechnological production of taxanes in plant cell cultures of Taxus spp.

Rosa M. Cusido, Miriam Onrubia, Ana B. Sabater-Jara, Elisabet Moyano, Mercedes Bonfill, Alain Goossens, M. Angeles Pedreño, Javier Palazon

(2014/11) - Biotechnology Advances

DOI
1081. Tracking the sterol biosynthesis pathway of the diatom Phaeodactylum tricornutum

Michele Fabris, Michiel Matthijs, Sophie Carbonelle, Tessa Moses, Jacob Pollier, Renaat Dasseville, Gino J. E. Baart, Wim Vyverman, Alain Goossens

(2014/11) - New Phytologist

DOI
1080. The ASH1-RELATED3 SET-domain protein controls cell division competence of the meristem and the quiescent center of the Arabidopsis primary root.

Kumpf R, Thorstensen T, Rahman MA, Heyman J, Nenseth HZ, Lammens T, Herrmann U, Swarup R, Veiseth SV, Emberland G, Bennett MJ, De Veylder L, Aalen RB

(2014/10) -

DOI
1079. UV-B-responsive association of the Arabidopsis bZIP transcription factor ELONGATED HYPOCOTYL5 with target genes, including its own promoter.

Binkert M, Kozma-Bognár L, Terecskei K, De Veylder L, Nagy F, Ulm R

(2014/10) -

DOI
1078. Phenylcoumaran Benzylic Ether Reductase Prevents Accumulation of Compounds Formed under Oxidative Conditions in Poplar Xylem

Claudiu Niculaes, Kris Morreel, Hoon Kim, Fachuang Lu, Lauren S. McKee, Bart Ivens, Jurgen Haustraete, Bartel Vanholme, Riet De Rycke, Magnus Hertzberg, Jorg Fromm, Vincent Bulone, Andrea Polle, John Ralph, Wout Boerjan

(2014/10) - The Plant Cell

DOI
1077. Selection and validation of reference genes for transcript normalization in gene expression studies in Catharanthus roseus

Jacob Pollier, Robin Vanden Bossche, Heiko Rischer, Alain Goossens

(2014/10) - Plant Physiology and Biochemistry

DOI
1076. Chloroplast dysfunction causes multiple defects in cell cycle progression in the Arabidopsis crumpled leaf mutant.

Hudik E, Yoshioka Y, Domenichini S, Bourge M, Soubigout-Taconnat L, Mazubert C, Yi D, Bujaldon S, Hayashi H, De Veylder L, Bergounioux C, Benhamed M, Raynaud C

(2014/09) -

DOI
1075. Deregulation of the replisome factor MCMBP prompts oncogenesis in colorectal carcinomas through chromosomal instability.

Quimbaya M, Raspé E, Denecker G, De Craene B, Roelandt R, Declercq W, Sagaert X, De Veylder L, Berx G

(2014/09) -

DOI
1074. Arabidopsis thaliana RNase H2 deficiency counteracts the needs for the WEE1 checkpoint kinase but triggers genome instability.

Kalhorzadeh P, Hu Z, Cools T, Amiard S, Willing EM, De Winne N, Gevaert K, De Jaeger G, Schneeberger K, White CI, De Veylder L

(2014/09) -

DOI
1073. Altered expression of Aurora kinases in Arabidopsis results in aneu- and polyploidization.

Demidov D, Lermontova I, Weiss O, Fuchs J, Rutten T, Kumke K, Sharbel TF, Van Damme D, De Storme N, Geelen D, Houben A

(2014/09) - The Plant journal : for cell and molecular biology

DOI
1072. Change your TPLATE, change your fate: plant CME and beyond.

Zhang Y, Persson S, Hirst J, Robinson MS, van Damme D, Sánchez-Rodríguez C, Sánchez-Rodríguez C

(2014/09) - Trends in plant science

DOI
1071. Taximin, a conserved plant‐specific peptide is involved in the modulation of plant‐specialized metabolism

Miriam Onrubia, Jacob Pollier, Robin Vanden Bossche, Marc Goethals, Kris Gevaert, Elisabet Moyano, Heriberto Vidal‐Limon, Rosa M. Cusidó, Javier Palazón, Alain Goossens

(2014/09) - Plant Biotechnology Journal

DOI
1070. It Is Easy to Get Huge Candidate Gene Lists for Plant Metabolism Now, but How to Get Beyond?

Goossens A

(2014/09) - Molecular plant

DOI
1069. Goossens Involvement of the leaf-specific multidrug and toxic compound extrusion (MATE) transporter Nt-JAT2 in vacuolar sequestration of nicotine in Nicotiana tabacum

No contributors listed

(2014/09) - PLoS One

DOI
1068. Plant development. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation.

Furuta KM, Yadav SR, Lehesranta S, Belevich I, Miyashima S, Heo JO, Vatén A, Lindgren O, De Rybel B, Van Isterdael G, Somervuo P, Lichtenberger R, Rocha R, Thitamadee S, Tähtiharju S, Auvinen P, Beeckman T, Jokitalo E, Helariutta Y

(2014/08) -

DOI
1067. Plant development. Integration of growth and patterning during vascular tissue formation in Arabidopsis.

De Rybel B, Adibi M, Breda AS, Wendrich JR, Smit ME, Novák O, Yamaguchi N, Yoshida S, Van Isterdael G, Palovaara J, Nijsse B, Boekschoten MV, Hooiveld G, Beeckman T, Wagner D, Ljung K, Fleck C, Weijers D

(2014/08) -

DOI
1066. A quiescent path to plant longevity.

Heyman J, Kumpf RP, De Veylder L

(2014/08) -

DOI
1065. Comparative transcriptome atlases reveal altered gene expression modules between two Cleomaceae C3 and C4 plant species.

Külahoglu C, Denton AK, Sommer M, Maß J, Schliesky S, Wrobel TJ, Berckmans B, Gongora-Castillo E, Buell CR, Simon R, De Veylder L, Bräutigam A, Weber AP

(2014/08) -

DOI
1064. Sulfenome mining in Arabidopsis thaliana.

Waszczak C, Akter S, Eeckhout D, Persiau G, Wahni K, Bodra N, Van Molle I, De Smet B, Vertommen D, Gevaert K, De Jaeger G, Van Montagu M, Messens J, Van Breusegem F

(2014/08) -

DOI
1063. The role of the secondary cell wall in plant resistance to pathogens

Eva Miedes, Ruben Vanholme, Wout Boerjan, Antonio Molina

(2014/08) - Frontiers in Plant Science

DOI
1062. Integration of growth and patterning during vascular tissue formation in Arabidopsis

Bert De Rybel, Milad Adibi, Alice S. Breda, Jos R. Wendrich, Margot E. Smit, Ondřej Novák, Nobutoshi Yamaguchi, Saiko Yoshida, Gert Van Isterdael, Joakim Palovaara, Bart Nijsse, Mark V. Boekschoten, Guido Hooiveld, Tom Beeckman, Doris Wagner, Karin Ljung, Christian Fleck, Dolf Weijers

(2014/08) - Science

DOI
1061. Arabidopsis NAC45/86 direct sieve element morphogenesis culminating in enucleation

Kaori Miyashima Furuta, Shri Ram Yadav, Satu Lehesranta, Ilya Belevich, Shunsuke Miyashima, Jung-ok Heo, Anne Vatén, Ove Lindgren, Bert De Rybel, Gert Van Isterdael, Panu Somervuo, Raffael Lichtenberger, Raquel Rocha, Siripong Thitamadee, Sari Tähtiharju, Petri Auvinen, Tom Beeckman, Eija Jokitalo, Ykä Helariutta

(2014/08) - Science

DOI
1060. Anterograde and retrograde regulation of nuclear genes encoding mitochondrial proteins during growth, development, and stress.

Ng S, De Clercq I, Van Aken O, Law SR, Ivanova A, Willems P, Giraud E, Van Breusegem F, Whelan J

(2014/07) -

DOI
1059. Mitochondrial perturbation negatively affects auxin signaling.

Kerchev PI, De Clercq I, Denecker J, Mühlenbock P, Kumpf R, Nguyen L, Audenaert D, Dejonghe W, Van Breusegem F

(2014/07) -

DOI
1058. Spatial H2O2 signaling specificity: H2O2 from chloroplasts and peroxisomes modulates the plant transcriptome differentially.

Sewelam N, Jaspert N, Van Der Kelen K, Tognetti VB, Schmitz J, Frerigmann H, Stahl E, Zeier J, Van Breusegem F, Maurino VG

(2014/07) -

DOI
1057. The death of plant cells: from proteases to field applications

S Stael, M K Nowack, F Breusegem, M Valls, N S Coll

(2014/07) - Cell Death & Differentiation

DOI
1056. Prenatal plumbing--vascular tissue formation in the plant embryo.

De Rybel B, Breda AS, Weijers D

(2014/06) -

DOI
1055. Molecular regulation of the diatom cell cycle.

Huysman MJ, Vyverman W, De Veylder L

(2014/06) -

DOI
1054. The Cyclin-Dependent Kinase Inhibitor KRP6 Induces Mitosis and Impairs Cytokinesis in Giant Cells Induced by Plant-Parasitic Nematodes in Arabidopsis.

Vieira P, De Clercq A, Stals H, Van Leene J, Van De Slijke E, Van Isterdael G, Eeckhout D, Persiau G, Van Damme D, Verkest A, Antonino de Souza JD, Júnior, Glab N, Abad P, Engler G, Inzé D, De Veylder L, De Jaeger G, Engler JD

(2014/06) -

DOI
1053. Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors.

Andriankaja ME, Danisman S, Mignolet-Spruyt LF, Claeys H, Kochanke I, Vermeersch M, De Milde L, De Bodt S, Storme V, Skirycz A, Maurer F, Bauer P, Mühlenbock P, Van Breusegem F, Angenent GC, Immink RG, Inzé D

(2014/06) -

DOI
1052. A COFRADIC protocol to study protein ubiquitination.

Stes E, Laga M, Walton A, Samyn N, Timmerman E, De Smet I, Goormachtig S, Gevaert K

(2014/06) -

DOI
1051. Combining linkage and association mapping identifies RECEPTOR-LIKE PROTEIN KINASE1 as an essential Arabidopsis shoot regeneration gene.

Motte H, Vercauteren A, Depuydt S, Landschoot S, Geelen D, Werbrouck S, Goormachtig S, Vuylsteke M, Vereecke D

(2014/06) -

DOI
1050. Mitochondrial perturbation negatively affects auxin signaling.

Kerchev PI, De Clercq I, Denecker J, Mühlenbock P, Kumpf R, Nguyen L, Audenaert D, Dejonghe W, Van Breusegem F

(2014/06) - Molecular Plant

DOI
1049. The Cyclin-Dependent Kinase Inhibitor KRP6 Induces Mitosis and Impairs Cytokinesis in Giant Cells Induced by Plant-Parasitic Nematodes in Arabidopsis.

Vieira P, De Clercq A, Stals H, Van Leene J, Van De Slijke E, Van Isterdael G, Eeckhout D, Persiau G, Van Damme D, Verkest A, Antonino de Souza JD, Engler JD

(2014/06) - The Plant cell

DOI
1048. The Phragmoplast-Orienting Kinesin-12 Class Proteins Translate the Positional Information of the Preprophase Band to Establish the Cortical Division Zone in Arabidopsis thaliana.

Lipka E, Gadeyne A, Stöckle D, Zimmermann S, De Jaeger G, Ehrhardt DW, Kirik V, Van Damme D, Müller S

(2014/06) - The Plant cell

DOI
1047. The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development.

Manzano C, Pallero-Baena M, Casimiro I, De Rybel B, Orman-Ligeza B, Van Isterdael G, Beeckman T, Draye X, Casero P, Del Pozo JC

(2014/05) -

DOI
1046. Accumulation of N-Acetylglucosamine Oligomers in the Plant Cell Wall Affects Plant Architecture in a Dose-Dependent and Conditional Manner

Bartel Vanholme, Ruben Vanholme, Halbay Turumtay, Geert Goeminne, Igor Cesarino, Florence Goubet, Kris Morreel, Jorge Rencoret, Vincent Bulone, Cortwa Hooijmaijers, Riet De Rycke, Godelieve Gheysen, John Ralph, Marc De Block, Frank Meulewaeter, Wout Boerjan

(2014/05) - Plant Physiology

DOI
1045. Transcript and Metabolite Profiling for the Evaluation of Tobacco Tree and Poplar as Feedstock for the Bio-based Industry

Colin Ruprecht, Takayuki Tohge, Alisdair Fernie, Cara L. Mortimer, Amanda Kozlo, Paul D. Fraser, Norma Funke, Igor Cesarino, Ruben Vanholme, Wout Boerjan, Kris Morreel, Ingo Burgert, Notburga Gierlinger, Vincent Bulone, Vera Schneider, Andrea Stockero, Juan Navarro-Aviñó, Frank Pudel, Bart Tambuyser, James Hygate, Jon Bumstead, Louis Notley, Staffan Persson

(2014/05) - Journal of Visualized Experiments

DOI
1044. Pericycle.

Beeckman T, De Smet I

(2014/05) - Current biology : CB

DOI
1043. The Emerging Role of Reactive Oxygen Species Signaling during Lateral Root Development.

Manzano C, Pallero-Baena M, Casimiro I, De Rybel B, Orman-Ligeza B, Van Isterdael G, Beeckman T, Draye X, Casero P, Del Pozo JC

(2014/05) - Plant Physiology

DOI
1042. Cell-to-Cell Communication during Lateral Root Development

Kun Yue, Tom Beeckman

(2014/05) - Molecular Plant

DOI
1041. Pericycle.

Beeckman T, De Smet I

(2014/05) - Current Biology

DOI
1040. Gene Duplicates in Vibrio Genomes

Dirk Gevers, Yves Van de Peer

(2014/04) - The Biology of Vibrios

DOI
1039. Protein degradation during the diatom cell cycle: annotation and transcriptional analysis of SCF and APC/C ubiquitin ligase genes in Phaeodactylum tricornutum.

Huysman MJ, Martens C, Vyverman W, De Veylder L

(2014/04) -

DOI
1038. Systematic Structural Characterization of Metabolites in Arabidopsis via Candidate Substrate-Product Pair Networks

Kris Morreel, Yvan Saeys, Oana Dima, Fachuang Lu, Yves Van de Peer, Ruben Vanholme, John Ralph, Bartel Vanholme, Wout Boerjan

(2014/04) - The Plant Cell

DOI
1037. New strigolactone analogs as plant hormones with low activities in the rhizosphere.

Boyer FD, de Saint Germain A, Pouvreau JB, Clavé G, Pillot JP, Roux A, Rasmussen A, Depuydt S, Lauressergues D, Frei Dit Frey N, Heugebaert TS, Stevens CV, Geelen D, Goormachtig S, Rameau C

(2014/04) -

DOI
1036. Role of LONELY GUY genes in indeterminate nodulation on Medicago truncatula.

Mortier V, Wasson A, Jaworek P, De Keyser A, Decroos M, Holsters M, Tarkowski P, Mathesius U, Goormachtig S

(2014/04) -

DOI
1035. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.

Fendrych M, Van Hautegem T, Van Durme M, Olvera-Carrillo Y, Huysmans M, Karimi M, Lippens S, Guérin CJ, Krebs M, Schumacher K, Nowack MK

(2014/04) - Current biology : CB

DOI
1034. Anterograde and retrograde regulation of nuclear genes encoding mitochondrial proteins during growth, development, and stress.

Ng S, De Clercq I, Van Aken O, Law SR, Ivanova A, Willems P, Giraud E, Van Breusegem F, Whelan J

(2014/04) - Molecular Plant

DOI
1033. The seco-iridoid pathway from Catharanthus roseus

Karel Miettinen, Lemeng Dong, Nicolas Navrot, Thomas Schneider, Vincent Burlat, Jacob Pollier, Lotte Woittiez, Sander van der Krol, Raphaël Lugan, Tina Ilc, Robert Verpoorte, Kirsi-Marja Oksman-Caldentey, Enrico Martinoia, Harro Bouwmeester, Alain Goossens, Johan Memelink, Danièle Werck-Reichhart

(2014/04) - Nature Communications

DOI
1032. Translational research: from pot to plot.

Nelissen H, Moloney M, Inzé D

(2014/04) -

DOI
1031. A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.

Verkest A, Abeel T, Heyndrickx KS, Van Leene J, Lanz C, Van De Slijke E, De Winne N, Eeckhout D, Persiau G, Van Breusegem F, Inzé D, Vandepoele K, De Jaeger G

(2014/03) -

DOI
1030. Natural product biosynthesis in Medicago species.

Gholami A, De Geyter N, Pollier J, Goormachtig S, Goossens A

(2014/03) -

DOI
1029. Differential methylation during maize leaf growth targets developmentally regulated genes.

Candaele J, Demuynck K, Mosoti D, Beemster GT, Inzé D, Nelissen H

(2014/03) -

DOI
1028. A new role for glutathione in the regulation of root architecture linked to strigolactones.

Marquez-Garcia B, Njo M, Beeckman T, Goormachtig S, Foyer CH

(2014/02) -

DOI
1027. The TPLATE adaptor complex drives clathrin-mediated endocytosis in plants.

Gadeyne A, Sánchez-Rodríguez C, Sánchez-Rodríguez C, Vanneste S, Di Rubbo S, Zauber H, Vanneste K, Van Leene J, De Winne N, Eeckhout D, Persiau G, Van Damme D

(2014/02) - Cell

DOI
1026. A new role for glutathione in the regulation of root architecture linked to strigolactones

BELEN MARQUEZ‐GARCIA, MARIA NJO, TOM BEECKMAN, SOFIE GOORMACHTIG, CHRISTINE H. FOYER

(2014/02) - Plant, Cell & Environment

DOI
1025. A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis.

Sorin C, Declerck M, Christ A, Blein T, Ma L, Lelandais-Brière C, Njo MF, Beeckman T, Crespi M, Hartmann C

(2014/02) - The New Phytologist

DOI
1024. The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species.

Yi D, Alvim Kamei CL, Cools T, Vanderauwera S, Takahashi N, Okushima Y, Eekhout T, Yoshiyama KO, Larkin J, Van den Daele H, Conklin P, Britt A, Umeda M, De Veylder L

(2014/01) -

DOI
1023. Improved saccharification and ethanol yield from field-grown transgenic poplar deficient in cinnamoyl-CoA reductase

Rebecca Van Acker, Jean-Charles Leplé, Dirk Aerts, Véronique Storme, Geert Goeminne, Bart Ivens, Frédéric Légée, Catherine Lapierre, Kathleen Piens, Marc C. E. Van Montagu, Nicholas Santoro, Clifton E. Foster, John Ralph, Wim Soetaert, Gilles Pilate, Wout Boerjan

(2014/01) - Proceedings of the National Academy of Sciences

DOI
1022. Processes underlying branching differences in fodder crops

Annemie Van Minnebruggen, Gerda Cnops, Oana Saracutu, Sofie Goormachtig, Erik Van Bockstaele, Isabel Roldán-Ruiz, Antje Rohde

(2014/01) - Euphytica

DOI
1021. Biosafety capacity building: experiences and challenges from a distance learning approach.

Pertry I, Sabbadini S, Goormachtig S, Lokko Y, Gheysen G, Burssens S, Mezzetti B

(2014/01) -

DOI
1020. The death of plant cells: from proteases to field applications.

Stael S, Nowack MK, Van Breusegem F, Valls M, Coll NS

(2014/01) - Cell death and differentiation

DOI
1019. Combinatorial biosynthesis of sapogenins and saponins in Saccharomyces cerevisiae using a C-16α hydroxylase from Bupleurum falcatum

Tessa Moses, Jacob Pollier, Lorena Almagro, Dieter Buyst, Marc Van Montagu, María A. Pedreño, José C. Martins, Johan M. Thevelein, Alain Goossens

(2014/01) - Proceedings of the National Academy of Sciences

DOI
1018. The Non-JAZ TIFY Protein TIFY8 from Arabidopsis thaliana Is a Transcriptional Repressor

Amparo Cuéllar Pérez, Astrid Nagels Durand, Robin Vanden Bossche, Rebecca De Clercq, Geert Persiau, Saskia C. M. Van Wees, Corné M. J. Pieterse, Kris Gevaert, Geert De Jaeger, Alain Goossens, Laurens Pauwels

(2014/01) - PLoS ONE

DOI
1017. A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development

Hyunwoo Cho, Hojin Ryu, Sangchul Rho, Kristine Hill, Stephanie Smith, Dominique Audenaert, Joonghyuk Park, Soeun Han, Tom Beeckman, Malcolm J. Bennett, Daehee Hwang, Ive De Smet, Ildoo Hwang

(2014/01) - Nature Cell Biology

DOI
1016. Fully automated compound screening in Arabidopsis thaliana seedlings.

Audenaert D, Nguyen L, De Rybel B, Beeckman T

(2014/01) - Methods in Molecular Biology

DOI
1015. Auxin transport and activity regulate stomatal patterning and development.

Le J, Liu XG, Yang KZ, Chen XL, Zou JJ, Wang HZ, Wang M, Vanneste S, Morita M, Tasaka M, Ding ZJ, Friml J, Beeckman T, Sack F

(2014/01) - Nature Communications

DOI
1014. Fully automated compound screening in Arabidopsis thaliana seedlings.

Audenaert D, Nguyen L, De Rybel B, Beeckman T

(2014) -

DOI
1013. The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history

Pajoro, Alice, Biewers, Sandra, Dougali, Evangelia, Valentim, Felipe Leal, Mendes, Marta Adelina, Porri, Aimone, Coupland, George, Van de Peer, Yves, van Dijk, Aalt D. J., Colombo, Lucia, Davies, Brendan, Angenent, Gerco C.

(2014) - Journal of Experimental Botany

DOI
1012. Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

Vanneste, Kevin, Maere, Steven, Van de Peer, Yves

(2014) - Philosophical Transactions of the Royal Society B-Biological Sciences

DOI
1011. Reciprocal Responses in the Interaction between Arabidopsis and the Cell-Content-Feeding Chelicerate Herbivore Spider Mite

Zhurov, Vladimir, Navarro, Marie, Bruinsma, Kristie A., Arbona, Vicent, Estrella Santamaria, M., Cazaux, Marc, Wybouw, Nicky, Osborne, Edward J., Ens, Cherise, Rioja, Cristina, Vermeirssen, Vanessa, Rubio-Somoza, Ignacio, Krishna, Priti, Diaz, Isabel, Schmid, Markus, Gomez-Cadenas, Aurelio, Van de Peer, Yves, Grbic, Miodrag, Clark, Richard M., Van Leeuwen, Thomas, Grbic, Vojislava

(2014) - Plant Physiology

DOI
1010. miRNA profiling in leaf and cork tissues of Quercus suber reveals novel miRNAs and tissue-specific expression patterns

Chaves, Ines, Lin, Yao-Cheng, Pinto-Ricardo, C., Van de Peer, Yves, Miguel, Celia

(2014) - Tree Genetics & Genomes

DOI
1009. From DNA- to NA-centrism and the conditions for gene-centrism revisited

De Tiege, Alexis, Tanghe, Koen, Braeckman, Johan, Van de Peer, Yves

(2014) - Biology & Philosophy

DOI
1008. Comparative in silico analysis of EST-SSRs in angiosperm and gymnosperm tree genera

Ranade, Sonali Sachin, Lin, Yao-Cheng, Zuccolo, Andrea, Van de Peer, Yves, Garcia-Gil, Maria del Rosario

(2014) - Bmc Plant Biology

DOI
1007. ASP-G: an ASP-based method for finding attractors in genetic regulatory networks

Mushthofa, Mushthofa, Torres, Gustavo, Van de Peer, Yves, Marchal, Kathleen, De Cock, Martine

(2014) - Bioinformatics

DOI
1006. Arabidopsis Ensemble Reverse-Engineered Gene Regulatory Network Discloses Interconnected Transcription Factors in Oxidative Stress

Vermeirssen, Vanessa, De Clercq, Inge, Van Parys, Thomas, Van Breusegem, Frank, Van de Peer, Yves

(2014) - Plant Cell

DOI
1005. A haploid system of sex determination in the brown alga ectocarpus sp.

Ahmed, S., Cock, J.M., Pessia, E., Luthringer, R., Cormier, A., Robuchon, M., Sterck, L., Peters, A.F., Dittami, S.M., Corre, E., Valero, M., Aury, J.-M., Roze, D., Van De Peer, Y., Bothwell, J., Marais, G.A.B., Coelho, S.M.

(2014) - Current Biology

DOI
1004. The heterothallic sugarbeet pathogen Cercospora beticola contains exon fragments of both MAT genes that are homogenized by concerted evolution

Bolton, Melvin D., de Jonge, Ronnie, Inderbitzin, Patrik, Liu, Zhaohui, Birla, Keshav, Van de Peer, Yves, Subbarao, Krishna V., Thomma, Bart P. H. J., Secor, Gary A.

(2014) - Fungal Genetics and Biology

DOI
1003. The genome of Eucalyptus grandis

Myburg, Alexander A., Grattapaglia, Dario, Tuskan, Gerald A., Hellsten, Uffe, Hayes, Richard D., Grimwood, Jane, Jenkins, Jerry, Lindquist, Erika, Tice, Hope, Bauer, Diane, Goodstein, David M., Dubchak, Inna, Poliakov, Alexandre, Mizrachi, Eshchar, Kullan, Anand R. K., Hussey, Steven G., Pinard, Desre, Van der Merwe, Karen, Singh, Pooja, Van Jaarsveld, Ida, Silva-Junior, Orzenil B., Togawa, Roberto C., Pappas, Marilia R., Faria, Danielle A., Sansaloni, Carolina P., Petroli, Cesar D., Yang, Xiaohan, Ranjan, Priya, Tschaplinski, Timothy J., Ye, Chu-Yu, Li, Ting, Sterck, Lieven, Vanneste, Kevin, Murat, Florent, Soler, Maral, Clemente, Helene San, Saidi, Naijib, Cassan-Wang, Hua, Dunand, Christophe, Hefer, Charles A., Bornberg-Bauer, Erich, Kersting, Anna R., Vining, Kelly, Amarasinghe, Vindhya, Ranik, Martin, Naithani, Sushma, Elser, Justin, Boyd, Alexander E., Liston, Aaron, Spatafora, Joseph W., Dharmwardhana, Palitha, Raja, Rajani, Sullivan, Christopher, Romanel, Elisson, Alves-Ferreira, Marcio, Lheim, Carsten Ku, Foley, William, Carocha, Victor, Paiva, Jorge, Kudrna, David, Brommonschenkel, Sergio H., Pasquali, Giancarlo, Byrne, Margaret, Rigault, Philippe, Tibbits, Josquin, Spokevicius, Antanas, Jones, Rebecca C., Steane, Dorothy A., Vaillancourt, Rene E., Potts, Brad M., Joubert, Fourie, Barry, Kerrie, Pappas, Georgios J., Jr., Strauss, Steven H., Jaiswal, Pankaj, Grima-Pettenati, Jacqueline, Salse, Jerome, Van de Peer, Yves, Rokhsar, Daniel S., Schmutz, Jeremy

(2014) - Nature

DOI
1002. The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

Bracken-Grissom, Heather, Collins, Allen G., Collins, Timothy, Crandall, Keith, Distel, Daniel, Dunn, Casey, Giribet, Gonzalo, Haddock, Steven, Knowlton, Nancy, Martindale, Mark, Medina, Monica, Messing, Charles, O'Brien, Stephen J., Paulay, Gustav, Putnam, Nicolas, Ravasi, Timothy, Rouse, Greg W., Ryan, Joseph F., Schulze, Anja, Worheide, Gert, Adamska, Maja, Bailly, Xavier, Breinholt, Jesse, Browne, William E., Diaz, M. Christina, Evans, Nathaniel, Flot, Jean-Francois, Fogarty, Nicole, Johnston, Matthew, Kamel, Bishoy, Kawahara, Akito Y., Laberge, Tammy, Lavrov, Dennis, Michonneau, Francois, Moroz, Leonid L., Oakley, Todd, Osborne, Karen, Pomponi, Shirley A., Rhodes, Adelaide, Rodriguez-Lanetty, Mauricio, Santos, Scott R., Satoh, Nori, Thacker, Robert W., Van de Peer, Yves, Voolstra, Christian R., Welch, David Mark, Winston, Judith, Zhou, Xin, GIGA Community Scientists

(2014) - Journal of Heredity

DOI
1001. Systematic Structural Characterization of Metabolites in Arabidopsis via Candidate Substrate-Product Pair Networks

Morreel, Kris, Saeys, Yvan, Dima, Oana, Lu, Fachuang, Van de Peer, Yves, Vanholme, Ruben, Ralph, John, Vanholme, Bartel, Boerjan, Wout

(2014) - Plant Cell

DOI
1000. Improving the Adaptability of Simulated Evolutionary Swarm Robots in Dynamically Changing Environments

Yao, Yao, Marchal, Kathleen, Van de Peer, Yves

(2014) - Plos One

DOI
999. Exoproteome analysis of Starmerella bombicola results in the discovery of an esterase required for lactonization of sophorolipids

Ciesielska, K., Van Bogaert, I. N., Chevineau, S., Li, B., Groeneboer, S., Soetaert, W., Van de Peer, Y., Devreese, B.

(2014) - Journal of Proteomics

DOI
998. Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

Vanneste, Kevin, Baele, Guy, Maere, Steven, Van de Peer, Yves

(2014) - Genome Research

DOI
997. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies

Blanc-Mathieu, Romain, Verhelst, Bram, Derelle, Evelyne, Rombauts, Stephane, Bouget, Francois-Yves, Carre, Isabelle, Chateau, Annie, Eyre-Walker, Adam, Grimsley, Nigel, Moreau, Herve, Piegu, Benoit, Rivals, Eric, Schackwitz, Wendy, Van de Peer, Yves, Piganeau, Gwenael

(2014) - Bmc Genomics

DOI
996. Preparation of Arabidopsis thaliana seedling proteomes for identifying metacaspase substrates by N-terminal COFRADIC.

Tsiatsiani L, Stael S, Van Damme P, Van Breusegem F, Gevaert K

(2014) -

DOI
995. Plant metacaspase activation and activity.

Minina EA, Stael S, Van Breusegem F, Bozhkov PV

(2014) -

DOI
994. Preparation of arabidopsis thaliana seedling proteomes for identifying metacaspase substrates by n-terminal COFRADIC

Tsiatsiani, L., Stael, S., Van Damme, P., Van Breusegem, F., Gevaert, K.

(2014) - Methods in Molecular Biology

DOI
993. Plant metacaspase activation and activity

Minina, E.A., Stael, S., Van Breusegem, F., Bozhkov, P.V.

(2014) - Methods in Molecular Biology

DOI
992. A click chemistry strategy for visualization of plant cell wall lignification

Yuki Tobimatsu, Dorien Van de Wouwer, Eric Allen, Robert Kumpf, Bartel Vanholme, Wout Boerjan, John Ralph

(2014) - Chemical Communications

DOI
991. The TPLATE Adaptor Complex Drives Clathrin-Mediated Endocytosis in Plants

Gadeyne, Astrid, Sanchez-Rodriguez, Clara, Vanneste, Steffen, Di Rubbo, Simone, Zauber, Henrik, Vanneste, Kevin, Van Leene, Jelle, De Winne, Nancy, Eeckhout, Dominique, Persiau, Geert, De Slijke, Eveline Van, Cannoot, Bernard, Vercruysse, Leen, Mayers, Jonathan R., Adamowski, Maciek, Kania, Urszula, Ehrlich, Matthias, Schweighofer, Alois, Ketelaar, Tijs, Maere, Steven, Bednarek, Sebastian Y., Friml, Jiri, Gevaert, Kris, Witters, Erwin, Russinova, Eugenia, Persson, Staffan, De Jaeger, Geert, Van Damme, Daniel

(2014) - Cell

DOI
990. Modeling the evolution of molecular systems from a mechanistic perspective

Gutierrez, Jayson, Maere, Steven

(2014) - Trends in Plant Science

DOI
989. Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

Vanneste, Kevin, Maere, Steven, Van de Peer, Yves

(2014) - Philosophical Transactions of the Royal Society B-Biological Sciences

DOI
988. Interview with Steven Maere

Maere, Steven

(2014) - Trends in Plant Science

DOI
987. Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous-Paleogene boundary

Vanneste, Kevin, Baele, Guy, Maere, Steven, Van de Peer, Yves

(2014) - Genome Research

DOI
986. Cell Division Plane Determination in Plant Development

David Bouchez, Daniël Van Damme, Joanna Boruc, Estelle Schaefer, Martine Pastuglia

(2014) - Cell Biology

DOI
985. A COFRADIC Protocol To Study Protein Ubiquitination

Stes, Elisabeth, Laga, Mathias, Walton, Alan, Samyn, Noortje, Timmerman, Evy, De Smet, Ive, Goormachtig, Sofie, Gevaert, Kris

(2014) - Journal of Proteome Research

DOI
984. Understanding the RALF family: a tale of many species

Murphy, Evan, De Smet, Ive

(2014) - Trends in Plant Science

DOI
983. Shaping a root system: regulating lateral versus primary root growth

Tian, Huiyu, De Smet, Ive, Ding, Zhaojun

(2014) - Trends in Plant Science

DOI
982. Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants

Kajala, Kaisa, Ramakrishna, Priya, Fisher, Adam, Bergmann, Dominique C., De Smet, Ive, Sozzani, Rosangela, Weijers, Dolf, Brady, Siobhan M.

(2014) - Annals of Botany

DOI
981. Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo

Slane, Daniel, Kong, Jixiang, Berendzen, Kenneth W., Kilian, Joachim, Henschen, Agnes, Kolb, Martina, Schmid, Markus, Harter, Klaus, Mayer, Ulrike, De Smet, Ive, Bayer, Martin, Juergens, Gerd

(2014) - Development

DOI
980. Designer crops: optimal root system architecture for nutrient acquisition

Kong, Xiangpei, Zhang, Maolin, De Smet, Ive, Ding, Zhaojun

(2014) - Trends in Biotechnology

DOI
979. A secreted peptide acts on BIN2-mediated phosphorylation of ARFs to potentiate auxin response during lateral root development

Cho, Hyunwoo, Ryu, Hojin, Rho, Sangchul, Hill, Kristine, Smith, Stephanie, Audenaert, Dominique, Park, Joonghyuk, Han, Soeun, Beeckman, Tom, Bennett, Malcolm J., Hwang, Daehee, De Smet, Ive, Hwang, Ildoo

(2014) - Nature Cell Biology

DOI
978. Natural product biosynthesis in Medicago species

Azra Gholami, Nathan De Geyter, Jacob Pollier, Sofie Goormachtig, Alain Goossens

(2014) - Natural Product Reports

DOI
977. LEAF-E: a tool to analyze grass leaf growth using function fitting.

Voorend W, Lootens P, Nelissen H, Roldán-Ruiz I, Inzé D, Muylle H

(2014) -

DOI
976. The Interplay Between Auxin and the Cell Cycle During Plant Development

Marlies J. F. Demeulenaere, Tom Beeckman

(2014) - Auxin and Its Role in Plant Development

DOI
975. Signaling Peptides in Plants

Sarieh Ghorbani, Fernandez A., Hilson P., Tom Beeckman

(2014) - Cell & Developmental Biology

DOI
974. Tightly controlled WRKY23 expression mediates Arabidopsis embryo development.

Grunewald W, De Smet I, De Rybel B, Robert HS, van de Cotte B, Willemsen V, Gheysen G, Weijers D, Friml J, Beeckman T

(2013/12) -

DOI
973. The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development.

Roberts I, Smith S, De Rybel B, Van Den Broeke J, Smet W, De Cokere S, Mispelaere M, De Smet I, Beeckman T

(2013/12) -

DOI
972. Lignification in Sugarcane: Biochemical Characterization, Gene Discovery, and Expression Analysis in Two Genotypes Contrasting for Lignin Content

A. Bottcher, I. Cesarino, A. Brombini dos Santos, R. Vicentini, J. L. S. Mayer, R. Vanholme, K. Morreel, G. Goeminne, J. C. M. S. Moura, P. M. Nobile, S. M. Carmello-Guerreiro, I. Antonio dos Anjos, S. Creste, W. Boerjan, M. G. d. A. Landell, P. Mazzafera

(2013/12) - Plant Physiology

DOI
971. Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana

Rebecca Van Acker, Ruben Vanholme, Véronique Storme, Jennifer C Mortimer, Paul Dupree, Wout Boerjan

(2013/12) - Biotechnology for Biofuels

DOI
970. The protein quality control system manages plant defence compound synthesis.

Pollier J, Moses T, González-Guzmán M, De Geyter N, Lippens S, Vanden Bossche R, Marhavý P, Kremer A, Morreel K, Guérin CJ, Tava A, Oleszek W, Thevelein JM, Campos N, Goormachtig S, Goossens A

(2013/12) -

DOI
969. Differential transcriptome analysis of glandular and filamentous trichomes in Artemisia annua

Sandra SA Soetaert, Christophe MF Van Neste, Mado L Vandewoestyne, Steven R Head, Alain Goossens, Filip CW Van Nieuwerburgh, Dieter LD Deforce

(2013/12) - BMC Plant Biology

DOI
968. The protein quality control system manages plant defence compound synthesis

Jacob Pollier, Tessa Moses, Miguel González-Guzmán, Nathan De Geyter, Saskia Lippens, Robin Vanden Bossche, Peter Marhavý, Anna Kremer, Kris Morreel, Christopher J. Guérin, Aldo Tava, Wieslaw Oleszek, Johan M. Thevelein, Narciso Campos, Sofie Goormachtig, Alain Goossens

(2013/12) - Nature

DOI
967. Comparative transcriptomics as a tool for the identification of root branching genes in maize

Leentje Jansen, Jens Hollunder, Ianto Roberts, Cristian Forestan, Philippe Fonteyne, Charlotte Van Quickenborne, Rui‐Guang Zhen, Bryan McKersie, Boris Parizot, Tom Beeckman

(2013/12) - Plant Biotechnology Journal

DOI
966. Tightly controlled WRKY23 expression mediates Arabidopsis embryo development

Wim Grunewald, Ive De Smet, Bert De Rybel, Helene S Robert, Brigitte van de Cotte, Viola Willemsen, Godelieve Gheysen, Dolf Weijers, Jiří Friml, Tom Beeckman

(2013/12) - EMBO Reports

DOI
965. ERF115 controls root quiescent center cell division and stem cell replenishment.

Heyman J, Cools T, Vandenbussche F, Heyndrickx KS, Van Leene J, Vercauteren I, Vanderauwera S, Vandepoele K, De Jaeger G, Van Der Straeten D, De Veylder L

(2013/11) -

DOI
964. Centromeric cohesion is protected twice at meiosis, by SHUGOSHINs at anaphase I and by PATRONUS at interkinesis.

Cromer L, Jolivet S, Horlow C, Chelysheva L, Heyman J, De Jaeger G, Koncz C, De Veylder L, Mercier R

(2013/11) -

DOI
963. Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.

Hackenberg T, Juul T, Auzina A, Gwizdz S, Malolepszy A, Van Der Kelen K, Dam S, Bressendorff S, Lorentzen A, Roepstorff P, Lehmann Nielsen K, Jørgensen JE, Hofius D, Van Breusegem F, Petersen M, Andersen SU

(2013/11) -

DOI
962. Retromer Subunits VPS35A and VPS29 Mediate Prevacuolar Compartment (PVC) Function in Arabidopsis

Tomasz Nodzyński, Mugurel I. Feraru, Sibylle Hirsch, Riet De Rycke, Claudiu Niculaes, Wout Boerjan, Jelle Van Leene, Geert De Jaeger, Steffen Vanneste, Jiří Friml

(2013/11) - Molecular Plant

DOI
961. Visualization of plant cell wall lignification using fluorescence‐tagged monolignols

Yuki Tobimatsu, Armin Wagner, Lloyd Donaldson, Prajakta Mitra, Claudiu Niculaes, Oana Dima, Jeong Im Kim, Nickolas Anderson, Dominique Loque, Wout Boerjan, Clint Chapple, John Ralph

(2013/11) - The Plant Journal

DOI
960. To branch or not to branch: the role of pre-patterning in lateral root formation.

Van Norman JM, Xuan W, Beeckman T, Benfey PN

(2013/11) - Development

DOI
959. Post mortem function of AtMC9 in xylem vessel elements.

Bollhöner B, Zhang B, Stael S, Denancé N, Overmyer K, Goffner D, Van Breusegem F, Tuominen H

(2013/10) -

DOI
958. Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homoeostasis

Philippe Ranocha, Oana Dima, Réka Nagy, Judith Felten, Claire Corratgé-Faillie, Ondřej Novák, Kris Morreel, Benoît Lacombe, Yves Martinez, Stephanie Pfrunder, Xu Jin, Jean-Pierre Renou, Jean-Baptiste Thibaud, Karin Ljung, Urs Fischer, Enrico Martinoia, Wout Boerjan, Deborah Goffner

(2013/10) - Nature Communications

DOI
957. Strigolactones fine-tune the root system.

Rasmussen A, Depuydt S, Goormachtig S, Geelen D

(2013/10) -

DOI
956. Bioengineering of plant (tri)terpenoids: from metabolic engineering of plants to synthetic biology in vivo and in vitro

Tessa Moses, Jacob Pollier, Johan M. Thevelein, Alain Goossens

(2013/10) - New Phytologist

DOI
955. Sequential induction of auxin efflux and influx carriers regulates lateral root emergence.

Péret B, Middleton AM, French AP, Larrieu A, Bishopp A, Njo M, Wells DM, Porco S, Mellor N, Band LR, Casimiro I, Kleine-Vehn J, Vanneste S, Sairanen I, Mallet R, Sandberg G, Ljung K, Beeckman T, Benkova E, Friml J, Kramer E, King JR, De Smet I, Pridmore T, Owen M, Bennett MJ

(2013/10) - Molecular Systems Biology

DOI
954. The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development.

Roberts I, Smith S, De Rybel B, Van Den Broeke J, Smet W, De Cokere S, Mispelaere M, De Smet I, Beeckman T

(2013/10) - Journal of Experimental Botany

DOI
953. Cryptogein-induced transcriptional reprogramming in tobacco is light dependent.

Hoeberichts FA, Davoine C, Vandorpe M, Morsa S, Ksas B, Stassen C, Triantaphylidès C, Van Breusegem F

(2013/09) -

DOI
952. The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.

De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, van de Cotte B, Jaspers P, Van de Peer Y, Kangasjärvi J, Whelan J, Van Breusegem F

(2013/09) -

DOI
951. A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis.

Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E

(2013/09) -

DOI
950. Caffeoyl Shikimate Esterase (CSE) Is an Enzyme in the Lignin Biosynthetic Pathway in Arabidopsis

Ruben Vanholme, Igor Cesarino, Katarzyna Rataj, Yuguo Xiao, Lisa Sundin, Geert Goeminne, Hoon Kim, Joanna Cross, Kris Morreel, Pedro Araujo, Lydia Welsh, Jurgen Haustraete, Christopher McClellan, Bartel Vanholme, John Ralph, Gordon G. Simpson, Claire Halpin, Wout Boerjan

(2013/09) - Science

DOI
949. The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.

De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, van de Cotte B, Jaspers P, Van de Peer Y, Kangasjärvi J, Whelan J, Van Breusegem F

(2013/09) - The Plant Cell

DOI
948. A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis.

Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E

(2013/09) - The Plant Cell

DOI
947. The Clathrin Adaptor Complex AP-2 Mediates Endocytosis of BRASSINOSTEROID INSENSITIVE1 inArabidopsis

Simone Di Rubbo, Niloufer G. Irani, Soo Youn Kim, Zheng-Yi Xu, Astrid Gadeyne, Wim Dejonghe, Isabelle Vanhoutte, Geert Persiau, Dominique Eeckhout, Sibu Simon, Kyungyoung Song, Jürgen Kleine-Vehn, Jiří Friml, Geert De Jaeger, Daniël Van Damme, Inhwan Hwang, Eugenia Russinova

(2013/09) - The Plant Cell

DOI
946. Message in a bottle: small signalling peptide outputs during growth and development.

Czyzewicz N, Yue K, Beeckman T, De Smet I

(2013/09) - Journal of Experimental Botany

DOI
945. Defects in leaf epidermis of Arabidopsis thaliana plants with CDKA;1 activity reduced in the shoot apical meristem.

Borowska-Wykręt D, Elsner J, De Veylder L, Kwiatkowska D

(2013/08) -

DOI
944. The Arabidopsis metacaspase9 degradome.

Tsiatsiani L, Timmerman E, De Bock PJ, Vercammen D, Stael S, van de Cotte B, Staes A, Goethals M, Beunens T, Van Damme P, Gevaert K, Van Breusegem F

(2013/08) -

DOI
943. Predicting Gene Function from Uncontrolled Expression Variation among Individual Wild-Type Arabidopsis Plants

Rahul Bhosale, Jeremy B. Jewell, Jens Hollunder, Abraham J.K. Koo, Marnik Vuylsteke, Tom Michoel, Pierre Hilson, Alain Goossens, Gregg A. Howe, John Browse, Steven Maere

(2013/08) - The Plant Cell

DOI
942. GOLVEN peptides as important regulatory signalling molecules of plant development.

Fernandez A, Hilson P, Beeckman T

(2013/08) - Journal of Experimental Botany

DOI
941. Post-embryonic root organogenesis in cereals: branching out from model plants

Beata Orman-Ligeza, Boris Parizot, Pascal P. Gantet, Tom Beeckman, Malcolm J. Bennett, Xavier Draye

(2013/08) - Trends in Plant Science

DOI
940. Lateral root development in Arabidopsis: fifty shades of auxin

Julien Lavenus, Tatsuaki Goh, Ianto Roberts, Soazig Guyomarc’h, Mikaël Lucas, Ive De Smet, Hidehiro Fukaki, Tom Beeckman, Malcolm Bennett, Laurent Laplaze

(2013/08) - Trends in Plant Science

DOI
939. Ectopic expression of Kip-related proteins restrains root-knot nematode-feeding site expansion.

Vieira P, Escudero C, Rodiuc N, Boruc J, Russinova E, Glab N, Mota M, De Veylder L, Abad P, Engler G, de Almeida Engler J

(2013/07) -

DOI
938. Traffic control in the root: keeping root branching in check.

Vanstraelen M, Beeckman T

(2013/07) - Developmental Cell

DOI
937. Breeding with rare defective alleles (BRDA): a natural Populus nigra HCT mutant with modified lignin as a case study

Bartel Vanholme, Igor Cesarino, Geert Goeminne, Hoon Kim, Fabio Marroni, Rebecca Van Acker, Ruben Vanholme, Kris Morreel, Bart Ivens, Sara Pinosio, Michele Morgante, John Ralph, Catherine Bastien, Wout Boerjan

(2013/05) - New Phytologist

DOI
936. CathaCyc, a Metabolic Pathway Database Built from Catharanthus roseus RNA-Seq Data

Alex Van Moerkercke, Michele Fabris, Jacob Pollier, Gino J.E. Baart, Stephane Rombauts, Ghulam Hasnain, Heiko Rischer, Johan Memelink, Kirsi-Marja Oksman-Caldentey, Alain Goossens

(2013/05) - Plant and Cell Physiology

DOI
935. Jasmonate signalling: a copycat of auxin signalling?

Pérez AC, Goossens A

(2013/05) - Plant, cell & environment

DOI
934. Multiple functions of Kip-related protein5 connect endoreduplication and cell elongation.

Jégu T, Latrasse D, Delarue M, Mazubert C, Bourge M, Hudik E, Blanchet S, Soler MN, Charon C, De Veylder L, Raynaud C, Bergounioux C, Benhamed M

(2013/04) -

DOI
933. Multivariable environmental conditions promote photosynthetic adaptation potential in Arabidopsis thaliana.

Wituszyńska W, Gałązka K, Rusaczonek A, Vanderauwera S, Van Breusegem F, Karpiński S

(2013/04) -

DOI
932. Lesion simulating disease1, enhanced disease susceptibility1, and phytoalexin deficient4 conditionally regulate cellular signaling homeostasis, photosynthesis, water use efficiency, and seed yield in Arabidopsis.

Wituszynska W, Slesak I, Vanderauwera S, Szechynska-Hebda M, Kornas A, Van Der Kelen K, Mühlenbock P, Karpinska B, Mackowski S, Van Breusegem F, Karpinski S

(2013/04) -

DOI
931. Expression of SofLAC, a new laccase in sugarcane, restores lignin content but not S:G ratio of Arabidopsis lac17 mutant

Igor Cesarino, Pedro Araújo, Juliana Lischka Sampaio Mayer, Renato Vicentini, Serge Berthet, Brecht Demedts, Bartel Vanholme, Wout Boerjan, Paulo Mazzafera

(2013/04) - Journal of Experimental Botany

DOI
930. Plant proteins under oxidative attack.

Jacques S, Ghesquière B, Van Breusegem F, Gevaert K

(2013/03) -

DOI
929. Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues.

Lucas M, Kenobi K, von Wangenheim D, Voβ U, Swarup K, De Smet I, Van Damme D, Lawrence T, Péret B, Moscardi E, Barbeau D, Godin C, Salt D, Bennett MJ

(2013/03) - Proceedings of the National Academy of Sciences of the United States of America

DOI
928. Synthetic molecules: helping to unravel plant signal transduction.

Xuan W, Murphy E, Beeckman T, Audenaert D, De Smet I

(2013/03) - Journal of chemical biology

DOI
927. Salicylic Acid Suppresses Jasmonic Acid Signaling Downstream of SCFCOI1-JAZ by Targeting GCC Promoter Motifs via Transcription Factor ORA59

Dieuwertje Van der Does, Antonio Leon-Reyes, Annemart Koornneef, Marcel C. Van Verk, Nicole Rodenburg, Laurens Pauwels, Alain Goossens, Ana P. Körbes, Johan Memelink, Tita Ritsema, Saskia C.M. Van Wees, Corné M.J. Pieterse

(2013/03) - The Plant Cell

DOI
926. Redundant and non-redundant roles of the trehalose-6-phosphate phosphatases in leaf growth, root hair specification and energy-responses in Arabidopsis

Hilde Van Houtte, Lorena López-Galvis, Lies Vandesteene, Tom Beeckman, Patrick Van Dijck

(2013/03) - Plant Signaling & Behavior

DOI
925. Synthetic molecules: helping to unravel plant signal transduction.

Xuan W, Murphy E, Beeckman T, Audenaert D, De Smet I

(2013/03) - Journal of Chemical Biology

DOI
924. A bHLH complex controls embryonic vascular tissue establishment and indeterminate growth in Arabidopsis.

De Rybel B, Möller B, Yoshida S, Grabowicz I, Barbier de Reuille P, Boeren S, Smith RS, Borst JW, Weijers D

(2013/02) -

DOI
923. Visualization of the exocyst complex dynamics at the plasma membrane of Arabidopsis thaliana.

Fendrych M, Synek L, Pecenková T, Drdová EJ, Sekeres J, de Rycke R, Nowack MK, Zársky V

(2013/02) -

DOI
922. Differences in dichogamy and herkogamy contribute to higher selfing in contrasting environments in the annual Blackstonia perfoliata (Gentianaceae).

Brys R, Geens B, Beeckman T, Jacquemyn H

(2013/02) - Annals of Botany

DOI
921. Auxin reflux between the endodermis and pericycle promotes lateral root initiation.

Marhavý P, Vanstraelen M, De Rybel B, Zhaojun D, Bennett MJ, Beeckman T, Benková E

(2013/01) -

DOI
920. SCF(TIR1/AFB)-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism.

Baster P, Robert S, Kleine-Vehn J, Vanneste S, Kania U, Grunewald W, De Rybel B, Beeckman T, Friml J

(2013/01) -

DOI
919. Brassinosteroid production and signaling differentially control cell division and expansion in the leaf.

Zhiponova MK, Vanhoutte I, Boudolf V, Betti C, Dhondt S, Coppens F, Mylle E, Maes S, González-García MP, Caño-Delgado AI, Inzé D, Beemster GT, De Veylder L, Russinova E

(2013/01) -

DOI
918. AUREOCHROME1a-mediated induction of the diatom-specific cyclin dsCYC2 controls the onset of cell division in diatoms (Phaeodactylum tricornutum).

Huysman MJ, Fortunato AE, Matthijs M, Costa BS, Vanderhaeghen R, Van den Daele H, Sachse M, Inzé D, Bowler C, Kroth PG, Wilhelm C, Falciatore A, Vyverman W, De Veylder L

(2013/01) -

DOI
917. Suppression of CCR impacts metabolite profile and cell wall composition in Pinus radiata tracheary elements

Armin Wagner, Yuki Tobimatsu, Geert Goeminne, Lorelle Phillips, Heather Flint, Diane Steward, Kirk Torr, Lloyd Donaldson, Wout Boerjan, John Ralph

(2013/01) - Plant Molecular Biology

DOI
916. MYB103 is required for FERULATE‐5‐HYDROXYLASE expression and syringyl lignin biosynthesis in Arabidopsis stems

David Öhman, Brecht Demedts, Manoj Kumar, Lorenz Gerber, András Gorzsás, Geert Goeminne, Mattias Hedenström, Brian Ellis, Wout Boerjan, Björn Sundberg

(2013/01) - The Plant Journal

DOI
915. A fluorescent alternative to the synthetic strigolactone GR24.

Rasmussen A, Heugebaert T, Matthys C, Van Deun R, Boyer FD, Goormachtig S, Stevens C, Geelen D

(2013/01) -

DOI
914. Nodule development on the tropical legume Sesbania virgata under flooded and non-flooded conditions.

Bomfeti CA, Ferreira PA, Carvalho TS, De Rycke R, Moreira FM, Goormachtig S, Holsters M

(2013/01) -

DOI
913. A protein phosphatase 2A complex spatially controls plant cell division.

Spinner L, Gadeyne A, Belcram K, Goussot M, Moison M, Duroc Y, Eeckhout D, De Winne N, Schaefer E, Van De Slijke E, Persiau G, Witters E, Gevaert K, Pastuglia M

(2013/01) - Nature communications

DOI
912. Coronatine, a more powerful elicitor for inducing taxane biosynthesis in Taxus media cell cultures than methyl jasmonate

Miriam Onrubia, Elisabet Moyano, Mercedes Bonfill, Rosa Mª Cusidó, Alain Goossens, Javier Palazón

(2013/01) - Journal of Plant Physiology

DOI
911. Inducible system for lateral roots in Arabidopsis thaliana and maize.

Jansen L, Parizot B, Beeckman T

(2013/01) - Methods in Molecular Biology

DOI
910. Overexpression of the trehalase gene AtTRE1 leads to increased drought stress tolerance in Arabidopsis and is involved in abscisic acid-induced stomatal closure.

Van Houtte H, Vandesteene L, López-Galvis L, Lemmens L, Kissel E, Carpentier S, Feil R, Avonce N, Beeckman T, Lunn JE, Van Dijck P

(2013/01) - Plant Physiology

DOI
909. Transcriptional and Functional Classification of the GOLVEN/ROOT GROWTH FACTOR/CLE-Like Signaling Peptides Reveals Their Role in Lateral Root and Hair Formation

Ana Fernandez, Andrzej Drozdzecki, Kurt Hoogewijs, Anh Nguyen, Tom Beeckman, Annemieke Madder, Pierre Hilson

(2013/01) - Plant Physiology

DOI
908. Imaging of phenotypes, gene expression, and protein localization during embryonic root formation in Arabidopsis.

Llavata-Peris C, Lokerse A, Möller B, De Rybel B, Weijers D

(2013) -

DOI
907. Small-molecule screens to study lateral root development.

Audenaert D, De Rybel B, Nguyen L, Beeckman T

(2013) -

DOI
906. The Potential of Text Mining in Data Integration and Network Biology for Plant Research: A Case Study on Arabidopsis

Van Landeghem, Sofie, De Bodt, Stefanie, Drebert, Zuzanna J., Inze, Dirk, Van de Peer, Yves

(2013) - Plant Cell

DOI
905. The biosynthetic gene cluster for sophorolipids: a biotechnological interesting biosurfactant produced by Starmerella bombicola

Van Bogaert, Inge N. A., Holvoet, Kevin, Roelants, Sophie L. K. W., Li, Bing, Lin, Yao-Cheng, Van de Peer, Yves, Soetaert, Wim

(2013) - Molecular Microbiology

DOI
904. Pan genome of the phytoplankton Emiliania underpins its global distribution

Read, Betsy A., Kegel, Jessica, Klute, Mary J., Kuo, Alan, Lefebvre, Stephane C., Maumus, Florian, Mayer, Christoph, Miller, John, Monier, Adam, Salamov, Asaf, Young, Jeremy, Aguilar, Maria, Claverie, Jean-Michel, Frickenhaus, Stephan, Gonzalez, Karina, Herman, Emily K., Lin, Yao-Cheng, Napier, Johnathan, Ogata, Hiroyuki, Sarno, Analissa F., Shmutz, Jeremy, Schroeder, Declan, de Vargas, Colomban, Verret, Frederic, von Dassow, Peter, Valentin, Klaus, Van de Peer, Yves, Wheeler, Glen, Dacks, Joel B., Delwiche, Charles F., Dyhrman, Sonya T., Gloeckner, Gernot, John, Uwe, Richards, Thomas, Worden, Alexandra Z., Zhang, Xiaoyu, Grigoriev, Igor V., Allen, Andrew E., Bidle, Kay, Borodovsky, M., Bowler, C., Brownlee, Colin, Cock, J. Mark, Elias, Marek, Gladyshev, Vadim N., Groth, Marco, Guda, Chittibabu, Hadaegh, Ahmad, Iglesias-Rodriguez, Maria Debora, Jenkins, J., Jones, Bethan M., Lawson, Tracy, Leese, Florian, Lindquist, Erika, Lobanov, Alexei, Lomsadze, Alexandre, Malik, Shehre-Banoo, Marsh, Mary E., Mackinder, Luke, Mock, Thomas, Mueller-Roeber, Bernd, Pagarete, Antonio, Parker, Micaela, Probert, Ian, Quesneville, Hadi, Raines, Christine, Rensing, Stefan A., Riano-Pachon, Diego Mauricio, Richier, Sophie, Rokitta, Sebastian, Shiraiwa, Yoshihiro, Soanes, Darren M., van der Giezen, Mark, Wahlund, Thomas M., Williams, Bryony, Wilson, Willie, Wolfe, Gordon, Wurch, Louie L., Emiliania Huxleyi Annotation

(2013) - Nature

DOI
903. Inference of Genome Duplications from Age Distributions Revisited

Vanneste, Kevin, Van de Peer, Yves, Maere, Steven

(2013) - Molecular Biology and Evolution

DOI
902. Large-Scale Event Extraction from Literature with Multi-Level Gene Normalization

Van Landeghem, Sofie, Bjorne, Jari, Wei, Chih-Hsuan, Hakala, Kai, Pyysalo, Sampo, Ananiadou, Sophia, Kao, Hung-Yu, Lu, Zhiyong, Salakoski, Tapio, Van de Peer, Yves, Ginter, Filip

(2013) - Plos One

DOI
901. TRAPID: An efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

Van Bel, M., Proost, S., Van Neste, C., Deforce, D., Van de Peer, Y., Vandepoele, K.

(2013) - Genome Biology

DOI
900. The complex intron landscape and massive intron invasion in a picoeukaryote provides insights into intron evolution

Verhelst, B., Van De Peer, Y., Rouzé, P.

(2013) - Genome Biology and Evolution

DOI
899. Significance and biological consequences of polyploidization in land plant evolution

Fawcett, J.A., Van de Peer, Y., Maere, S.

(2013) - Plant Genome Diversity Volume 2: Physical Structure, Behaviour and Evolution of Plant Genomes

DOI
898. The Norway spruce genome sequence and conifer genome evolution

Nystedt, Bjorn, Street, Nathaniel R., Wetterbom, Anna, Zuccolo, Andrea, Lin, Yao-Cheng, Scofield, Douglas G., Vezzi, Francesco, Delhomme, Nicolas, Giacomello, Stefania, Alexeyenko, Andrey, Vicedomini, Riccardo, Sahlin, Kristoffer, Sherwood, Ellen, Elfstrand, Malin, Gramzow, Lydia, Holmberg, Kristina, Hallman, Jimmie, Keech, Olivier, Klasson, Lisa, Koriabine, Maxim, Kucukoglu, Melis, Kaller, Max, Luthman, Johannes, Lysholm, Fredrik, Niittyla, Totte, Olson, Ake, Rilakovic, Nemanja, Ritland, Carol, Rossello, Josep A., Sena, Juliana, Svensson, Thomas, Talavera-Lopez, Carlos, Theissen, Guenter, Tuominen, Hannele, Vanneste, Kevin, Wu, Zhi-Qiang, Zhang, Bo, Zerbe, Philipp, Arvestad, Lars, Bhalerao, Rishikesh, Bohlmann, Joerg, Bousquet, Jean, Gil, Rosario Garcia, Hvidsten, Torgeir R., de Jong, Pieter, MacKay, John, Morgante, Michele, Ritland, Kermit, Sundberg, Bjorn, Thompson, Stacey Lee, Van de Peer, Yves, Andersson, Bjorn, Nilsson, Ove, Ingvarsson, Par K., Lundeberg, Joakim, Jansson, Stefan

(2013) - Nature

DOI
897. The Mycobacterium tuberculosis regulatory network and hypoxia

Galagan, James E., Minch, Kyle, Peterson, Matthew, Lyubetskaya, Anna, Azizi, Elham, Sweet, Linsday, Gomes, Antonio, Rustad, Tige, Dolganov, Gregory, Glotova, Irina, Abeel, Thomas, Mahwinney, Chris, Kennedy, Adam D., Allard, Rene, Brabant, William, Krueger, Andrew, Jaini, Suma, Honda, Brent, Yu, Wen-Han, Hickey, Mark J., Zucker, Jeremy, Garay, Christopher, Weiner, Brian, Sisk, Peter, Stolte, Christian, Winkler, Jessica K., Van de Peer, Yves, Iazzetti, Paul, Camacho, Diogo, Dreyfuss, Jonathan, Liu, Yang, Dorhoi, Anca, Mollenkopf, Hans-Joachim, Drogaris, Paul, Lamontagne, Julie, Zhou, Yiyong, Piquenot, Julie, Park, Sang Tae, Raman, Sahadevan, Kaufmann, Stefan H. E., Mohney, Robert P., Chelsky, Daniel, Moody, D. Branch, Sherman, David R., Schoolnik, Gary K.

(2013) - Nature

DOI
896. SILAC-Based Proteome Analysis of Starmerella bombicola Sophorolipid Production

Ciesielska, Katarzyna, Li, Bing, Groeneboer, Sara, Van Bogaert, Inge, Lin, Yao-Chen, Soetaert, Wim, Van de Peer, Yves, Devreese, Bart

(2013) - Journal of Proteome Research

DOI
895. Overview of tomato (Solanum lycopersicum) candidate pathogen recognition genes reveals important Solanum R locus dynamics

Andolfo, G., Sanseverino, W., Rombauts, S., Van de Peer, Y., Bradeen, J. M., Carputo, D., Frusciante, L., Ercolano, M. R.

(2013) - New Phytologist

DOI
894. Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne

Ruttink, Tom, Sterck, Lieven, Rohde, Antje, Bendixen, Christian, Rouze, Pierre, Asp, Torben, Van de Peer, Yves, Roldan-Ruiz, Isabel

(2013) - Plant Biotechnology Journal

DOI
893. Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

De Smet, Riet, Adams, Keith L., Vandepoele, Klaas, van Montagu, Marc C. E., Maere, Steven, Van de Peer, Yves

(2013) - Proceedings of the National Academy of Sciences of the United States of America

DOI
892. Candida bombicola as a Platform Organism for the Production of Tailor-Made Biomolecules

Roelants, Sophie L. K. W., Saerens, Karen M. J., Derycke, Thibaut, Li, Bing, Lin, Yao-Cheng, Van de Peer, Yves, De Maeseneire, Sofie L., Van Bogaert, Inge N. A., Soetaert, Wim

(2013) - Biotechnology and Bioengineering

DOI
891. The Membrane-Bound NAC Transcription Factor ANAC013 Functions in Mitochondrial Retrograde Regulation of the Oxidative Stress Response in Arabidopsis

De Clercq, Inge, Vermeirssen, Vanessa, Van Aken, Olivier, Vandepoele, Klaas, Murcha, Monika W., Law, Simon R., Inze, Annelies, Ng, Sophia, Ivanova, Aneta, Rombaut, Debbie, van de Cotte, Brigitte, Jaspers, Pinja, Van de Peer, Yves, Kangasjarvi, Jaakko, Whelan, James, Van Breusegem, Frank

(2013) - Plant Cell

DOI
890. Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions

Zimmer, Andreas D., Lang, Daniel, Buchta, Karol, Rombauts, Stephane, Nishiyama, Tomoaki, Hasebe, Mitsuyasu, Van de Peer, Yves, Rensing, Stefan A., Reski, Ralf

(2013) - Bmc Genomics

DOI
889. pico-PLAZA, a genome database of microbial photosynthetic eukaryotes

Vandepoele, Klaas, Van Bel, Michiel, Richard, Guilhem, Van Landeghem, Sofie, Verhelst, Bram, Moreau, Herve, Van de Peer, Yves, Grimsley, Nigel, Piganeau, Gwenael

(2013) - Environmental Microbiology

DOI
888. Towards a carbon-negative sustainable bio-based economy.

Vanholme B, Desmet T, Ronsse F, Rabaey K, Van Breusegem F, De Mey M, Soetaert W, Boerjan W

(2013) -

DOI
887. Shikimate hydroxycinnamoyl transferase (HCT) activity assays in Populus nigra

Cesarino I, Vanholme R, Goeminne G, Vanholme B, Boerjan W

(2013) - Bio-protocol

DOI
886. Towards a carbon-negative sustainable bio-based economy

Bartel Vanholme, Tom Desmet, Frederik Ronsse, Korneel Rabaey, Frank Van Breusegem, Marjan De Mey, Wim Soetaert, Wout Boerjan

(2013) - Frontiers in Plant Science

DOI
885. Plant cell wall profiling by fast maximum likelihood reconstruction (FMLR) and region-of-interest (ROI) segmentation of solution-state 2D 1H–13C NMR spectra

Roger A Chylla, Rebecca Van Acker, Hoon Kim, Ali Azapira, Purba Mukerjee, John L Markley, Véronique Storme, Wout Boerjan, John Ralph

(2013) - Biotechnology for Biofuels

DOI
884. Predicting Gene Function from Uncontrolled Expression Variation among Individual Wild-Type Arabidopsis Plants

Bhosale, Rahul, Jewell, Jeremy B., Hollunder, Jens, Koo, Abraham J. K., Vuylsteke, Marnik, Michoel, Tom, Hilson, Pierre, Goossens, Alain, Howe, Gregg A., Browse, John, Maere, Steven

(2013) - Plant Cell

DOI
883. Inference of Genome Duplications from Age Distributions Revisited

Vanneste, Kevin, Van de Peer, Yves, Maere, Steven

(2013) - Molecular Biology and Evolution

DOI
882. Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

De Smet, Riet, Adams, Keith L., Vandepoele, Klaas, van Montagu, Marc C. E., Maere, Steven, Van de Peer, Yves

(2013) - Proceedings of the National Academy of Sciences of the United States of America

DOI
881. Tightly controlled WRKY23 expression mediates Arabidopsis embryo development

Grunewald, Wim, De Smet, Ive, De Rybel, Bert, Robert, Helene S., van de Cotte, Brigitte, Willemsen, Viola, Gheysen, Godelieve, Weijers, Dolf, Friml, Jiri, Beeckman, Tom

(2013) - Embo Reports

DOI
880. The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development

Roberts, Ianto, Smith, Stephanie, De Rybel, Bert, Van Den Broeke, Jana, Smet, Wouter, De Cokere, Sarah, Mispelaere, Marieke, De Smet, Ive, Beeckman, Tom

(2013) - Journal of Experimental Botany

DOI
879. Message in a bottle: small signalling peptide outputs during growth and development

Czyzewicz, Nathan, Yue, Kun, Beeckman, Tom, De Smet, Ive

(2013) - Journal of Experimental Botany

DOI
878. Transcriptional repression of BODENLOS by HD-ZIP transcription factor HB5 in Arabidopsis thaliana

De Smet, Ive, Lau, Steffen, Ehrismann, Jasmin S., Axiotis, Ioannis, Kolb, Martina, Kientz, Marika, Weijers, Dolf, Juergens, Gerd

(2013) - Journal of Experimental Botany

DOI
877. Localised ABA signalling mediates root growth plasticity

Ding, Zhaojun, De Smet, Ive

(2013) - Trends in Plant Science

DOI
876. Inference of the Genetic Network Regulating Lateral Root Initiation in Arabidopsis thaliana

Muraro, Daniele, Voss, Ute, Wilson, Michael, Bennett, Malcolm, Byrne, Helen, De Smet, Ive, Hodgman, Charlie, King, John

(2013) - Ieee-Acm Transactions on Computational Biology and Bioinformatics

DOI
875. Development: CLAVATA1 Joins the Club of Root Stem Cell Regulators

Williams, Elisabeth L., De Smet, Ive

(2013) - Current Biology

DOI
874. Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues

Lucas, Mikael, Kenobi, Kim, von Wangenheim, Daniel, Voss, Ute, Swarup, Kamal, De Smet, Ive, Van Damme, Daniel, Lawrence, Tara, Peret, Benjamin, Moscardi, Eric, Barbeau, Daniel, Godin, Christophe, Salt, David, Guyomarc'h, Soazig, Stelzer, Ernst H. K., Maizel, Alexis, Laplaze, Laurent, Bennett, Malcolm J.

(2013) - Proceedings of the National Academy of Sciences of the United States of America

DOI
873. Lateral root development in Arabidopsis: fifty shades of auxin

Lavenus, Julien, Goh, Tatsuaki, Roberts, Ianto, Guyomarc'h, Soazig, Lucas, Mikael, De Smet, Ive, Fukaki, Hidehiro, Beeckman, Tom, Bennett, Malcolm, Laplaze, Laurent

(2013) - Trends in Plant Science

DOI
872. Sequential induction of auxin efflux and influx carriers regulates lateral root emergence

Peret, Benjamin, Middleton, Alistair M., French, Andrew P., Larrieu, Antoine, Bishopp, Anthony, Njo, Maria, Wells, Darren M., Porco, Silvana, Mellor, Nathan, Band, Leah R., Casimiro, Ilda, Kleine-Vehn, Juergen, Vanneste, Steffen, Sairanen, Ilkka, Mallet, Romain, Sandberg, Goran, Ljung, Karin, Beeckman, Tom, Benkova, Eva, Friml, Jiri, Kramer, Eric, King, John R., De Smet, Ive, Pridmore, Tony, Owen, Markus, Bennett, Malcolm J.

(2013) - Molecular Systems Biology

DOI
871. cDNA-AFLP-Based Transcript Profiling for Genome-Wide Expression Analysis of Jasmonate-Treated Plants and Plant Cultures

Janine Colling, Jacob Pollier, Nokwanda P. Makunga, Alain Goossens

(2013) - Methods in Molecular Biology

DOI
870. Yeast Two-Hybrid Analysis of Jasmonate Signaling Proteins

Amparo Pérez Cuéllar, Laurens Pauwels, Rebecca De Clercq, Alain Goossens

(2013) - Methods in Molecular Biology

DOI
869. Transient Expression Assays in Tobacco Protoplasts

Robin Vanden Bossche, Brecht Demedts, Rudy Vanderhaeghen, Alain Goossens

(2013) - Methods in Molecular Biology

DOI
868. Analysis of RNA-Seq Data with TopHat and Cufflinks for Genome-Wide Expression Analysis of Jasmonate-Treated Plants and Plant Cultures

Jacob Pollier, Stephane Rombauts, Alain Goossens

(2013) - Methods in Molecular Biology

DOI
867. Metabolite Profiling of Plant Tissues by Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Jacob Pollier, Alain Goossens

(2013) - Methods in Molecular Biology

DOI
866. Jasmonate signalling: a copycat of auxin signalling?

No contributors listed

(2013) - Plant, Cell and Environment

No link available
865. Kinematic analysis of cell division in leaves of mono- and dicotyledonous species: a basis for understanding growth and developing refined molecular sampling strategies.

Nelissen H, Rymen B, Coppens F, Dhondt S, Fiorani F, Beemster GT

(2013) -

DOI
864. Adventitious Root Induction in Arabidopsis thaliana as a Model for In Vitro Root Organogenesis

Inge Verstraeten, Tom Beeckman, Danny Geelen

(2013) - Methods in Molecular Biology

DOI
863. Small-Molecule Screens to Study Lateral Root Development

Dominique Audenaert, Bert De Rybel, Long Nguyen, Tom Beeckman

(2013) - Methods in Molecular Biology

DOI
862. AtWRKY15 perturbation abolishes the mitochondrial stress response that steers osmotic stress tolerance in Arabidopsis.

Vanderauwera S, Vandenbroucke K, Inzé A, van de Cotte B, Mühlenbock P, De Rycke R, Naouar N, Van Gaever T, Van Montagu MC, Van Breusegem F

(2012/12) -

DOI
861. Metabolic engineering of novel lignin in biomass crops

Ruben Vanholme, Kris Morreel, Chiarina Darrah, Paula Oyarce, John H. Grabber, John Ralph, Wout Boerjan

(2012/12) - New Phytologist

DOI
860. A MultiSite GatewayTM vector set for the functional analysis of genes in the model Saccharomyces cerevisiae

Astrid Nagels Durand, Tessa Moses, Rebecca De Clercq, Alain Goossens, Laurens Pauwels

(2012/12) - BMC Molecular Biology

DOI
859. SCF(TIR1/AFB)-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism.

Baster P, Robert S, Kleine-Vehn J, Vanneste S, Kania U, Grunewald W, De Rybel B, Beeckman T, Friml J

(2012/12) - The EMBO Journal

DOI
858. The anaphase-promoting complex/cyclosome in control of plant development.

Heyman J, De Veylder L

(2012/11) -

DOI
857. Impact of the Absence of Stem-Specific β-Glucosidases on Lignin and Monolignols

Aurélie Chapelle, Kris Morreel, Ruben Vanholme, Philippe Le-Bris, Halima Morin, Catherine Lapierre, Wout Boerjan, Lise Jouanin, Nathalie Demont-Caulet

(2012/11) - Plant Physiology

DOI
856. Protein–Protein and Protein–Membrane Associations in the Lignin Pathway

Jean-Etienne Bassard, Ludovic Richert, Jan Geerinck, Hugues Renault, Frédéric Duval, Pascaline Ullmann, Martine Schmitt, Etienne Meyer, Jerôme Mutterer, Wout Boerjan, Geert De Jaeger, Yves Mely, Alain Goossens, Danièle Werck-Reichhart

(2012/11) - The Plant Cell

DOI
855. Strigolactones are involved in root response to low phosphate conditions in Arabidopsis.

Mayzlish-Gati E, De-Cuyper C, Goormachtig S, Beeckman T, Vuylsteke M, Brewer PB, Beveridge CA, Yermiyahu U, Kaplan Y, Enzer Y, Wininger S, Resnick N, Cohen M, Kapulnik Y, Koltai H

(2012/11) -

DOI
854. Protein–Protein and Protein–Membrane Associations in the Lignin Pathway

Jean-Etienne Bassard, Ludovic Richert, Jan Geerinck, Hugues Renault, Frédéric Duval, Pascaline Ullmann, Martine Schmitt, Etienne Meyer, Jerôme Mutterer, Wout Boerjan, Geert De Jaeger, Yves Mely, Alain Goossens, Danièle Werck-Reichhart

(2012/11) - The Plant Cell

DOI
853. Auxin reflux between the endodermis and pericycle promotes lateral root initiation

Peter Marhavý, Marleen Vanstraelen, Bert De Rybel, Ding Zhaojun, Malcolm J Bennett, Tom Beeckman, Eva Benková

(2012/11) - The EMBO Journal

DOI
852. Auxin and epigenetic regulation of SKP2B, an F-box that represses lateral root formation.

Manzano C, Ramirez-Parra E, Casimiro I, Otero S, Desvoyes B, De Rybel B, Beeckman T, Casero P, Gutierrez C, C Del Pozo J

(2012/10) -

DOI
851. CCS52 and DEL1 genes are key components of the endocycle in nematode-induced feeding sites.

de Almeida Engler J, Kyndt T, Vieira P, Van Cappelle E, Boudolf V, Sanchez V, Escobar C, De Veylder L, Engler G, Abad P, Gheysen G

(2012/10) -

DOI
850. A Systems Biology View of Responses to Lignin Biosynthesis Perturbations inArabidopsis

Ruben Vanholme, Véronique Storme, Bartel Vanholme, Lisa Sundin, Jørgen Holst Christensen, Geert Goeminne, Claire Halpin, Antje Rohde, Kris Morreel, Wout Boerjan

(2012/10) - The Plant Cell

DOI
849. Retinoblastoma related1 regulates asymmetric cell divisions in Arabidopsis.

Weimer AK, Nowack MK, Bouyer D, Zhao X, Harashima H, Naseer S, De Winter F, Dissmeyer N, Geldner N, Schnittger A

(2012/10) -

DOI
848. Histone H2B monoubiquitination is required to reach maximal transcript levels of circadian clock genes in Arabidopsis.

Himanen K, Woloszynska M, Boccardi TM, De Groeve S, Nelissen H, Bruno L, Vuylsteke M, Van Lijsebettens M

(2012/10) -

DOI
847. Plant developmental biologists meet on stairways in Matera.

Beeckman T, Friml J

(2012/10) - Development

DOI
846. Auxin and Epigenetic Regulation of SKP2B, an F-Box That Represses Lateral Root Formation

Concepción Manzano, Elena Ramirez-Parra, Ilda Casimiro, Sofía Otero, Bénédicte Desvoyes, Bert De Rybel, Tom Beeckman, Pedro Casero, Crisanto Gutierrez, Juan C. del Pozo

(2012/10) - Plant Physiology

DOI
845. Expansive Evolution of the TREHALOSE-6-PHOSPHATE PHOSPHATASE Gene Family in Arabidopsis

Lies Vandesteene, Lorena López-Galvis, Kevin Vanneste, Regina Feil, Steven Maere, Willem Lammens, Filip Rolland, John E. Lunn, Nelson Avonce, Tom Beeckman, Patrick Van Dijck

(2012/10) - Plant Physiology

DOI
844. A role for the root cap in root branching revealed by the non-auxin probe naxillin.

De Rybel B, Audenaert D, Xuan W, Overvoorde P, Strader LC, Kepinski S, Hoye R, Brisbois R, Parizot B, Vanneste S, Liu X, Gilday A, Graham IA, Nguyen L, Jansen L, Njo MF, Inzé D, Bartel B, Beeckman T

(2012/09) -

DOI
843. Evaluation of the Anti-angiogenic Activity of Saponins from Maesa lanceolata by Different Assays

Kenn Foubert, Annelies Breynaert, Mart Theunis, Rita Van Den Bossche, Guido R.Y. De Meyer, André Van Daele, Ahmad Faizal, Alain Goossens, Danny Geelen, Edward M. Conway, Arnold Vlietinck, Luc Pieters, Sandra Apers

(2012/09) - Natural Product Communications

DOI
842. Strigolactones are involved in root response to low phosphate conditions in Arabidopsis.

Mayzlish-Gati E, De-Cuyper C, Goormachtig S, Beeckman T, Vuylsteke M, Brewer PB, Beveridge CA, Yermiyahu U, Kaplan Y, Enzer Y, Wininger S, Resnick N, Cohen M, Kapulnik Y, Koltai H

(2012/09) - Plant Physiology

DOI
841. Significance and Biological Consequences of Polyploidization in Land Plant Evolution

Jeffrey A. Fawcett, Yves Van de Peer, Steven Maere

(2012/08) - Plant Genome Diversity Volume 2

DOI
840. CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations.

De Bodt S, Hollunder J, Nelissen H, Meulemeester N, Inzé D

(2012/08) -

DOI
839. A role for the root cap in root branching revealed by the non-auxin probe naxillin.

De Rybel B, Audenaert D, Xuan W, Overvoorde P, Strader LC, Kepinski S, Hoye R, Brisbois R, Parizot B, Vanneste S, Liu X, Gilday A, Graham IA, Nguyen L, Jansen L, Njo MF, Inzé D, Bartel B, Beeckman T

(2012/08) - Nature Chemical Biology

DOI
838. Evidence for a role of Arabidopsis CDT1 proteins in gametophyte development and maintenance of genome integrity.

Domenichini S, Benhamed M, De Jaeger G, Van De Slijke E, Blanchet S, Bourge M, De Veylder L, Bergounioux C, Raynaud C

(2012/07) -

DOI
837. A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division.

Nelissen H, Rymen B, Jikumaru Y, Demuynck K, Van Lijsebettens M, Kamiya Y, Inzé D, Beemster GT

(2012/07) -

DOI
836. Identification of putative cancer genes through data integration and comparative genomics between plants and humans.

Quimbaya M, Vandepoele K, Raspé E, Matthijs M, Dhondt S, Beemster GT, Berx G, De Veylder L

(2012/06) -

DOI
835. Transcriptional machineries in jasmonate-elicited plant secondary metabolism.

De Geyter N, Gholami A, Goormachtig S, Goossens A

(2012/06) -

DOI
834. Transcriptional machineries in jasmonate-elicited plant secondary metabolism

Nathan De Geyter, Azra Gholami, Sofie Goormachtig, Alain Goossens

(2012/06) - Trends in Plant Science

DOI
833. The metabolic blueprint of Phaeodactylum tricornutum reveals a eukaryotic Entner–Doudoroff glycolytic pathway

Michele Fabris, Michiel Matthijs, Stephane Rombauts, Wim Vyverman, Alain Goossens, Gino J.E. Baart

(2012/06) - The Plant Journal

DOI
832. Repression of early lateral root initiation events by transient water deficit in barley and maize.

Babé A, Lavigne T, Séverin JP, Nagel KA, Walter A, Chaumont F, Batoko H, Beeckman T, Draye X

(2012/06) - Philosophical transactions of the Royal Society of London. Series B, Biological sciences

DOI
831. Tackling Drought Stress: RECEPTOR-LIKE KINASES Present New Approaches

Alex Marshall, Reidunn B. Aalen, Dominique Audenaert, Tom Beeckman, Martin R. Broadley, Melinka A. Butenko, Ana I. Caño-Delgado, Sacco de Vries, Thomas Dresselhaus, Georg Felix, Neil S. Graham, John Foulkes, Christine Granier, Thomas Greb, Ueli Grossniklaus, John P. Hammond, Renze Heidstra, Charlie Hodgman, Michael Hothorn, Dirk Inzé, Lars Østergaard, Eugenia Russinova, Rüdiger Simon, Aleksandra Skirycz, Yvonne Stahl, Cyril Zipfel, Ive De Smet

(2012/06) - The Plant Cell

DOI
830. In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis.

Parizot B, Roberts I, Raes J, Beeckman T, De Smet I

(2012/06) - Philosophical Transactions of the Royal Society of London. Series B, Biological sciences

DOI
829. Phloem-associated auxin response maxima determine radial positioning of lateral roots in maize.

Jansen L, Roberts I, De Rycke R, Beeckman T

(2012/06) - Philosophical Transactions of the Royal Society of London. Series B, Biological sciences

DOI
828. Natural substrates of plant proteases: how can protease degradomics extend our knowledge?

Tsiatsiani L, Gevaert K, Van Breusegem F

(2012/05) -

DOI
827. Identification of cis-regulatory elements specific for different types of reactive oxygen species in Arabidopsis thaliana.

Petrov V, Vermeirssen V, De Clercq I, Van Breusegem F, Minkov I, Vandepoele K, Gechev TS

(2012/05) -

DOI
826. Nodule numbers are governed by interaction between CLE peptides and cytokinin signaling.

Mortier V, De Wever E, Vuylsteke M, Holsters M, Goormachtig S

(2012/05) -

DOI
825. Genetic framework of cyclin-dependent kinase function in Arabidopsis.

Nowack MK, Harashima H, Dissmeyer N, Zhao X, Bouyer D, Weimer AK, De Winter F, Yang F, Schnittger A

(2012/05) -

DOI
824. Fluorescent castasterone reveals BRI1 signaling from the plasma membrane.

Irani NG, Di Rubbo S, Mylle E, Van den Begin J, Schneider-Pizoń J, Hniliková J, Šíša M, Buyst D, Vilarrasa-Blasi J, Szatmári AM, Van Damme D, Russinova E

(2012/05) - Nature chemical biology

DOI
823. Oleanolic acid

Jacob Pollier, Alain Goossens

(2012/05) - Phytochemistry

DOI
822. Natural Hypolignification Is Associated with Extensive Oligolignol Accumulation in Flax Stems

Rudy Huis, Kris Morreel, Ophélie Fliniaux, Anca Lucau-Danila, Stéphane Fénart, Sébastien Grec, Godfrey Neutelings, Brigitte Chabbert, François Mesnard, Wout Boerjan, Simon Hawkins

(2012/04) - Plant Physiology

DOI
821. Strigolactones suppress adventitious rooting in Arabidopsis and pea.

Rasmussen A, Mason MG, De Cuyper C, Brewer PB, Herold S, Agusti J, Geelen D, Greb T, Goormachtig S, Beeckman T, Beveridge CA

(2012/04) -

DOI
820. Plasma membrane calcium ATPases are important components of receptor-mediated signaling in plant immune responses and development.

Frei dit Frey N, Mbengue M, Kwaaitaal M, Nitsch L, Altenbach D, Häweker H, Lozano-Duran R, Njo MF, Beeckman T, Huettel B, Borst JW, Panstruga R, Robatzek S

(2012/04) - Plant Physiology

DOI
819. Strigolactones Suppress Adventitious Rooting in Arabidopsis and Pea

Amanda Rasmussen, Michael Glenn Mason, Carolien De Cuyper, Philip B. Brewer, Silvia Herold, Javier Agusti, Danny Geelen, Thomas Greb, Sofie Goormachtig, Tom Beeckman, Christine Anne Beveridge

(2012/04) - Plant Physiology

DOI
818. Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.

Magyar Z, Horváth B, Khan S, Mohammed B, Henriques R, De Veylder L, Bakó L, Scheres B, Bögre L

(2012/03) -

DOI
817. Combined linkage and association mapping reveals CYCD5;1 as a quantitative trait gene for endoreduplication in Arabidopsis.

Sterken R, Kiekens R, Boruc J, Zhang F, Vercauteren A, Vercauteren I, De Smet L, Dhondt S, Inzé D, De Veylder L, Russinova E, Vuylsteke M

(2012/03) -

DOI
816. Wuschel-related homeobox5 gene expression and interaction of CLE peptides with components of the systemic control add two pieces to the puzzle of autoregulation of nodulation.

Osipova MA, Mortier V, Demchenko KN, Tsyganov VE, Tikhonovich IA, Lutova LA, Dolgikh EA, Goormachtig S

(2012/03) -

DOI
815. GOLVEN Secretory Peptides Regulate Auxin Carrier Turnover during Plant Gravitropic Responses

Ryan Whitford, Ana Fernandez, Ricardo Tejos, Amparo Cuéllar Pérez, Jürgen Kleine-Vehn, Steffen Vanneste, Andrzej Drozdzecki, Johannes Leitner, Lindy Abas, Maarten Aerts, Kurt Hoogewijs, Pawel Baster, Ruth De Groodt, Yao-Cheng Lin, Véronique Storme, Yves Van de Peer, Tom Beeckman, Annemieke Madder, Bart Devreese, Christian Luschnig, Jiří Friml, Pierre Hilson

(2012/03) - Developmental Cell

DOI
814. Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism

Leah R. Band, Darren M. Wells, Antoine Larrieu, Jianyong Sun, Alistair M. Middleton, Andrew P. French, Géraldine Brunoud, Ethel Mendocilla Sato, Michael H. Wilson, Benjamin Péret, Marina Oliva, Ranjan Swarup, Ilkka Sairanen, Geraint Parry, Karin Ljung, Tom Beeckman, Jonathan M. Garibaldi, Mark Estelle, Markus R. Owen, Kris Vissenberg, T. Charlie Hodgman, Tony P. Pridmore, John R. King, Teva Vernoux, Malcolm J. Bennett

(2012/03) - Proceedings of the National Academy of Sciences

DOI
813. Stress homeostasis - the redox and auxin perspective.

Tognetti VB, Mühlenbock P, Van Breusegem F

(2012/02) -

DOI
812. A subcellular localization compendium of hydrogen peroxide-induced proteins.

Inzé A, Vanderauwera S, Hoeberichts FA, Vandorpe M, Van Gaever T, Van Breusegem F

(2012/02) -

DOI
811. Day length is a key regulator of transcriptomic responses to both CO(2) and H(2)O(2) in Arabidopsis.

Queval G, Neukermans J, Vanderauwera S, Van Breusegem F, Noctor G

(2012/02) -

DOI
810. Accelerating the domestication of forest trees in a changing world

Antoine Harfouche, Richard Meilan, Matias Kirst, Michele Morgante, Wout Boerjan, Maurizio Sabatti, Giuseppe Scarascia Mugnozza

(2012/02) - Trends in Plant Science

DOI
809. Never too many? How legumes control nodule numbers.

Mortier V, Holsters M, Goormachtig S

(2012/02) -

DOI
808. Identification of cis-regulatory elements specific for different types of reactive oxygen species in Arabidopsis thaliana.

Petrov V, Vermeirssen V, De Clercq I, Van Breusegem F, Minkov I, Vandepoele K, Gechev TS

(2012/02) - Gene

DOI
807. Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis.

Grunewald W, De Smet I, Lewis DR, Löfke C, Jansen L, Goeminne G, Vanden Bossche R, Karimi M, De Rybel B, Vanholme B, Teichmann T, Boerjan W, Van Montagu MC, Gheysen G, Muday GK, Friml J, Beeckman T

(2012/01) - Proceedings of the National Academy of Sciences of the United States of America

DOI
806. Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis

Wim Grunewald, Ive De Smet, Daniel R. Lewis, Christian Löfke, Leentje Jansen, Geert Goeminne, Robin Vanden Bossche, Mansour Karimi, Bert De Rybel, Bartel Vanholme, Thomas Teichmann, Wout Boerjan, Marc C. E. Van Montagu, Godelieve Gheysen, Gloria K. Muday, Jiří Friml, Tom Beeckman

(2012/01) - Proceedings of the National Academy of Sciences

DOI
805. Small-molecule dissection of brassinosteroid signaling.

Codreanu MC, Audenaert D, Nguyen L, Beeckman T, Russinova E

(2012/01) - Methods in Molecular Biology

DOI
804. Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis

Wim Grunewald, Ive De Smet, Daniel R. Lewis, Christian Löfke, Leentje Jansen, Geert Goeminne, Robin Vanden Bossche, Mansour Karimi, Bert De Rybel, Bartel Vanholme, Thomas Teichmann, Wout Boerjan, Marc C. E. Van Montagu, Godelieve Gheysen, Gloria K. Muday, Jiří Friml, Tom Beeckman

(2012/01) - Proceedings of the National Academy of Sciences

DOI
803. A novel sensor to map auxin response and distribution at high spatio-temporal resolution.

Brunoud G, Wells DM, Oliva M, Larrieu A, Mirabet V, Burrow AH, Beeckman T, Kepinski S, Traas J, Bennett MJ, Vernoux T

(2012/01) - Nature

DOI
802. Analyzing Lateral Root Development: How to Move Forward

Ive De Smet, Philip J. White, A. Glyn Bengough, Lionel Dupuy, Boris Parizot, Ilda Casimiro, Renze Heidstra, Marta Laskowski, Marc Lepetit, Frank Hochholdinger, Xavier Draye, Hanma Zhang, Martin R. Broadley, Benjamin Péret, John P. Hammond, Hidehiro Fukaki, Sacha Mooney, Jonathan P. Lynch, Phillipe Nacry, Ulrich Schurr, Laurent Laplaze, Philip Benfey, Tom Beeckman, Malcolm Bennett

(2012/01) - The Plant Cell

DOI
801. Transcriptional Profiling of Plasmodium falciparum Parasites from Patients with Severe Malaria Identifies Distinct Low vs. High Parasitemic Clusters

Milner, Danny A., Jr., Pochet, Nathalie, Krupka, Malkie, Williams, Chris, Seydel, Karl, Taylor, Terrie E., Van de Peer, Yves, Regev, Aviv, Wirth, Dyann, Daily, Johanna P., Mesirov, Jill P.

(2012) - Plos One

DOI
800. The tomato genome sequence provides insights into fleshy fruit evolution

Sato, Shusei, Tabata, Satoshi, Hirakawa, Hideki, Asamizu, Erika, Shirasawa, Kenta, Isobe, Sachiko, Kaneko, Takakazu, Nakamura, Yasukazu, Shibata, Daisuke, Aoki, Koh, Egholm, Michael, Knight, James, Bogden, Robert, Li, Changbao, Shuang, Yang, Xu, Xun, Pan, Shengkai, Cheng, Shifeng, Liu, Xin, Ren, Yuanyuan, Wang, Jun, Albiero, Alessandro, Dal Pero, Francesca, Todesco, Sara, Van Eck, Joyce, Buels, Robert M., Bombarely, Aureliano, Gosselin, Joseph R., Huang, Minyun, Leto, Jonathan A., Menda, Naama, Strickler, Susan, Mao, Linyong, Gao, Shan, Tecle, Isaak Y., York, Thomas, Zheng, Yi, Vrebalov, Julia T., Lee, JeMin, Zhong, Silin, Mueller, Lukas A., Stiekema, Willem J., Ribeca, Paolo, Alioto, Tyler, Yang, Wencai, Huang, Sanwen, Du, Yongchen, Zhang, Zhonghua, Gao, Jianchang, Guo, Yanmei, Wang, Xiaoxuan, Li, Ying, He, Jun, Li, Chuanyou, Cheng, Zhukuan, Zuo, Jianru, Ren, Jianfeng, Zhao, Jiuhai, Yan, Liuhua, Jiang, Hongling, Wang, Bao, Li, Hongshuang, Li, Zhenjun, Fu, Fuyou, Chen, Bingtang, Han, Bin, Feng, Qi, Fan, Danlin, Wang, Ying, Ling, Hongqing, Xue, Yongbiao, Ware, Doreen, McCombie, W. Richard, Lippman, Zachary B., Chia, Jer-Ming, Jiang, Ke, Pasternak, Shiran, Gelley, Laura, Kramer, Melissa, Anderson, Lorinda K., Chang, Song-Bin, Royer, Suzanne M., Shearer, Lindsay A., Stack, Stephen M., Rose, Jocelyn K. C., Xu, Yimin, Eannetta, Nancy, Matas, Antonio J., McQuinn, Ryan, Tanksley, Steven D., Camara, Francisco, Guigo, Roderic, Rombauts, Stephane, Fawcett, Jeffrey, Van de Peer, Yves, Zamir, Dani, Liang, Chunbo, Spannagl, Manuel, Gundlach, Heidrun, Bruggmann, Remy, Mayer, Klaus, Jia, Zhiqi, Zhang, Junhong, Ye, Zhibiao, Bishop, Gerard J., Butcher, Sarah, Lopez-Cobollo, Rosa, Buchan, Daniel, Filippis, Ioannis, Abbott, James, Dixit, Rekha, Singh, Manju, Singh, Archana, Pal, Jitendra Kumar, Pandit, Awadhesh, Singh, Pradeep Kumar, Mahato, Ajay Kumar, Dogra, Vivek, Gaikwad, Kishor, Sharma, Tilak Raj, Mohapatra, Trilochan, Singh, Nagendra Kumar, Causse, Mathilde, Rothan, Christophe, Schiex, Thomas, Noirot, Celine, Bellec, Arnaud, Klopp, Christophe, Delalande, Corinne, Berges, Helene, Mariette, Jerome, Frasse, Pierre, Vautrin, Sonia, Zouine, Mohamed, Latche, Alain, Rousseau, Christine, Regad, Farid, Pech, Jean-Claude, Philippot, Murielle, Bouzayen, Mondher, Pericard, Pierre, Osorio, Sonia, Fernandez del Carmen, Asuncion, Monforte, Antonio, Granell, Antonio, Fernandez-Munoz, Rafael, Conte, Mariana, Lichtenstein, Gabriel, Carrari, Fernando, De Bellis, Gianluca, Fuligni, Fabio, Peano, Clelia, Grandillo, Silvana, Termolino, Pasquale, Pietrella, Marco, Fantini, Elio, Falcone, Giulia, Fiore, Alessia, Giuliano, Giovanni, Lopez, Loredana, Facella, Paolo, Perrotta, Gaetano, Daddiego, Loretta, Bryan, Glenn, Orozco, Modesto, Pastor, Xavier, Torrents, David, van Schriek, Keygene N. V. Marco G. M., Feron, Richard M. C., van Oeveren, Jan, de Heer, Peter, daPonte, Lorena, Jacobs-Oomen, Saskia, Cariaso, Mike, Prins, Marcel, van Eijk, Michiel J. T., Janssen, Antoine, van Haaren, Mark J. J., Jo, Sung-Hwan, Kim, Jungeun, Kwon, Suk-Yoon, Kim, Sangmi, Koo, Dal-Hoe, Lee, Sanghyeob, Hur, Cheol-Goo, Clouser, Christopher, Rico, Alain, Hallab, Asis, Gebhardt, Christiane, Klee, Kathrin, Joecker, Anika, Warfsmann, Jens, Goebel, Ulrike, Kawamura, Shingo, Yano, Kentaro, Sherman, Jamie D., Fukuoka, Hiroyuki, Negoro, Satomi, Bhutty, Sarita, Chowdhury, Parul, Chattopadhyay, Debasis, Datema, Erwin, Smit, Sandra, Schijlen, Eliog. W. M., van de Belt, Jose, van Haarst, Jan C., Peters, Sander A., van Staveren, Marjo J., Henkens, Marleen H. C., Mooyman, Paul J. W., Hesselink, Thamara, van Ham, Roeland C. H. J., Jiang, Guoyong, Droege, Marcus, Choi, Doil, Kang, Byung-Cheol, Kim, Byung Dong, Park, Minkyu, Kim, Seungill, Yeom, Seon-In, Lee, Yong-Hwan, Choi, Yang-Do, Li, Guangcun, Gao, Jianwei, Liu, Yongsheng, Huang, Shengxiong, Fernandez-Pedrosa, Victoria, Collado, Carmen, Zuniga, Sheila, Wang, Guoping, Cade, Rebecca, Dietrich, Robert A., Rogers, Jane, Knapp, Sandra, Fei, Zhangjun, Whit

(2012) - Nature

DOI
799. Semantically linking molecular entities in literature through entity relationships

Van Landeghem, Sofie, Bjorne, Jari, Abeel, Thomas, De Baets, Bernard, Salakoski, Tapio, Van de Peer, Yves

(2012) - Bmc Bioinformatics

DOI
798. ORCAE: online resource for community annotation of eukaryotes

Sterck, Lieven, Billiau, Kenny, Abeel, Thomas, Rouze, Pierre, van de Peer, Yves

(2012) - Nature Methods

DOI
797. Higher Intron Loss Rate in Arabidopsis thaliana Than A-lyrata Is Consistent with Stronger Selection for a Smaller Genome

Fawcett, Jeffrey A., Rouze, Pierre, Van de Peer, Yves

(2012) - Molecular Biology and Evolution

DOI
796. GOLVEN Secretory Peptides Regulate Auxin Carrier Turnover during Plant Gravitropic Responses

Whitford, Ryan, Fernandez, Ana, Tejos, Ricardo, Perez, Amparo Cuellar, Kleine-Vehn, Jurgen, Vanneste, Steffen, Drozdzecki, Andrzej, Leitner, Johannes, Abas, Lindy, Aerts, Maarten, Hoogewijs, Kurt, Baster, Pawel, De Groodt, Ruth, Lin, Yao-Cheng, Storme, Veronique, Van de Peer, Yves, Beeckman, Tom, Madder, Annemieke, Devreese, Bart, Luschnig, Christian, Friml, Jiri, Hilson, Pierre

(2012) - Developmental Cell

DOI
795. Germline copy number variation associated with Mendelian inheritance of CLL in two families

Brown, J. R., Hanna, M., Tesar, B., Pochet, N., Vartanov, A., Fernandes, S. M., Werner, L., Ash, M., Roden, C. A., MacConaill, L., Hainz, U., Longtine, J., Wang, Y. E., Correll, M., Van de Peer, Y., Regev, A., Wu, C., Neuberg, D., Freedman, A. S.

(2012) - Leukemia

DOI
794. Getting up to speed

Van de Peer, Yves, ChrisPires, J.

(2012) - Current Opinion in Plant Biology

DOI
793. Gamma Paleohexaploidy in the Stem Lineage of Core Eudicots: Significance for MADS-Box Gene and Species Diversification

Vekemans, Dries, Proost, Sebastian, Vanneste, Kevin, Coenen, Heleen, Viaene, Tom, Ruelens, Philip, Maere, Steven, Van de Peer, Yves, Geuten, Koen

(2012) - Molecular Biology and Evolution

DOI
792. Deconstruction of the (paleo)polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes

Malacarne, G., Perazzolli, M., Cestaro, A., Sterck, L., Fontana, P., van de Peer, Y., Viola, R., Velasco, R., Salamini, F.

(2012) - PLoS ONE

DOI
791. A Transgenic Mouse Marking Live Replicating Cells Reveals In Vivo Transcriptional Program of Proliferation

Klochendler, Agnes, Weinberg-Corem, Noa, Moran, Maya, Swisa, Avital, Pochet, Nathalie, Savova, Virginia, Vikesa, Jonas, Van de Peer, Yves, Brandeis, Michael, Regev, Aviv, Nielsen, Finn Cilius, Dor, Yuval, Eden, Amir

(2012) - Developmental Cell

DOI
790. Redundancy and rewiring of genetic networks following genome-wide duplication events

De Smet, Riet, Van de Peer, Yves

(2012) - Current Opinion in Plant Biology

DOI
789. Exploring biomolecular literature with EVEX: Connecting genes through events, homology, and indirect associations

Van Landeghem, S., Hakala, K., Rönnqvist, S., Salakoski, T., Van De Peer, Y., Ginter, F.

(2012) - Advances in Bioinformatics

DOI
788. The Ectocarpus Genome and Brown Algal Genomics. The Ectocarpus Genome Consortium.

Cock, J.M., Sterck, L., Ahmed, S., Allen, A.E., Amoutzias, G., Anthouard, V., Artiguenave, F., Arun, A., Aury, J.-M., Badger, J.H., Beszteri, B., Billiau, K., Bonnet, E., Bothwell, J.H., Bowler, C., Boyen, C., Brownlee, C., Carrano, C.J., Charrier, B., Cho, G.Y., Coelho, S.M., Collén, J., Le Corguillé, G., Corre, E., Dartevelle, L., Da Silva, C., Delage, L., Delaroque, N., Dittami, S.M., Doulbeau, S., Elias, M., Farnham, G., Gachon, C.M.M., Godfroy, O., Gschloessl, B., Heesch, S., Jabbari, K., Jubin, C., Kawai, H., Kimura, K., Kloareg, B., Küpper, F.C., Lang, D., Le Bail, A., Luthringer, R., Leblanc, C., Lerouge, P., Lohr, M., Lopez, P.J., Macaisne, N., Martens, C., Maumus, F., Michel, G., Miranda-Saavedra, D., Morales, J., Moreau, H., Motomura, T., Nagasato, C., Napoli, C.A., Nelson, D.R., Nyvall-Collén, P., Peters, A.F., Pommier, C., Potin, P., Poulain, J., Quesneville, H., Read, B., Rensing, S.A., Ritter, A., Rousvoal, S., Samanta, M., Samson, G., Schroeder, D.C., Scornet, D., Ségurens, B., Strittmatter, M., Tonon, T., Tregear, J.W., Valentin, K., Von Dassow, P., Yamagishi, T., Rouzé, P., Van de Peer, Y., Wincker, P.

(2012) - Advances in Botanical Research

DOI
787. Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

Moreau, H., Verhelst, B., Couloux, A., Derelle, E., Rombauts, S., Grimsley, N., Van Bel, M., Poulain, J., Katinka, M., Hohmann-Marriott, M.F., Piganeau, G., Rouzé, P., Da Silva, C., Wincker, P., Van de Peer, Y., Vandepoele, K.

(2012) - Genome biology

DOI
786. Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes

Murat, F., Van De Peer, Y., Salse, J.

(2012) - Genome Biology and Evolution

DOI
785. Evaluation and Properties of the Budding Yeast Phosphoproteome

Amoutzias, Grigoris D., He, Ying, Lilley, Kathryn S., Van de Peer, Yves, Oliver, Stephen G.

(2012) - Molecular & Cellular Proteomics

DOI
784. Dissecting Plant Genomes with the PLAZA Comparative Genomics Platform

Van Bel, Michiel, Proost, Sebastian, Wischnitzki, Elisabeth, Movahedi, Sara, Scheerlinck, Christopher, Van de Peer, Yves, Vandepoele, Klaas

(2012) - Plant Physiology

DOI
783. Integrative Genomic Analysis Implicates Gain of PIK3CA at 3q26 and MYC at 8q24 in Chronic Lymphocytic Leukemia

Brown, Jennifer R., Hanna, Megan, Tesar, Bethany, Werner, Lillian, Pochet, Nathalie, Asara, John M., Wang, Yaoyu E., dal Cin, Paola, Fernandes, Stacey M., Thompson, Christina, MacConaill, Laura, Wu, Catherine J., Van de Peer, Yves, Correll, Mick, Regev, Aviv, Neuberg, Donna, Freedman, Arnold S.

(2012) - Clinical Cancer Research

DOI
782. GenomeView: a next-generation genome browser

Abeel, Thomas, Van Parys, Thomas, Saeys, Yvan, Galagan, James, Van de Peer, Yves

(2012) - Nucleic Acids Research

DOI
781. i-ADHoRe 3.0-fast and sensitive detection of genomic homology in extremely large data sets

Proost, Sebastian, Fostier, Jan, De Witte, Dieter, Dhoedt, Bart, Demeester, Piet, Van de Peer, Yves, Vandepoele, Klaas

(2012) - Nucleic Acids Research

DOI
780. A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors in Melampsora larici-populina (Poplar Leaf Rust)

Hacquard, Stephane, Joly, David L., Lin, Yao-Cheng, Tisserant, Emilie, Feau, Nicolas, Delaruelle, Christine, Legue, Valerie, Kohler, Annegret, Tanguay, Philippe, Petre, Benjamin, Frey, Pascal, Van de Peer, Yves, Rouze, Pierre, Martin, Francis, Hamelin, Richard C., Duplessis, Sebastien

(2012) - Molecular Plant-Microbe Interactions

DOI
779. OSD1 promotes meiotic progression via APC/C inhibition and forms a regulatory network with TDM and CYCA1;2/TAM.

Cromer L, Heyman J, Touati S, Harashima H, Araou E, Girard C, Horlow C, Wassmann K, Schnittger A, De Veylder L, Mercier R

(2012) -

DOI
778. Hydrogen peroxide-a central hub for information flow in plant cells.

Petrov VD, Van Breusegem F

(2012) -

DOI
777. Chemical PARP inhibition enhances growth of Arabidopsis and reduces anthocyanin accumulation and the activation of stress protective mechanisms.

Schulz P, Neukermans J, Van der Kelen K, Mühlenbock P, Van Breusegem F, Noctor G, Teige M, Metzlaff M, Hannah MA

(2012) -

DOI
776. Reconstruction of Ancestral Metabolic Enzymes Reveals Molecular Mechanisms Underlying Evolutionary Innovation through Gene Duplication

Voordeckers, Karin, Brown, Chris A., Vanneste, Kevin, van der Zande, Elisa, Voet, Arnout, Maere, Steven, Verstrepen, Kevin J.

(2012) - Plos Biology

DOI
775. Gamma Paleohexaploidy in the Stem Lineage of Core Eudicots: Significance for MADS-Box Gene and Species Diversification

Vekemans, Dries, Proost, Sebastian, Vanneste, Kevin, Coenen, Heleen, Viaene, Tom, Ruelens, Philip, Maere, Steven, Van de Peer, Yves, Geuten, Koen

(2012) - Molecular Biology and Evolution

DOI
774. Expansive Evolution of the TREHALOSE-6-PHOSPHATE PHOSPHATASE Gene Family in Arabidopsis

Vandesteene, Lies, Lopez-Galvis, Lorena, Vanneste, Kevin, Feil, Regina, Maere, Steven, Lammens, Willem, Rolland, Filip, Lunn, John E., Avonce, Nelson, Beeckman, Tom, Van Dijck, Patrick

(2012) - Plant Physiology

DOI
773. The Role of Plant Peptides in Symbiotic Interactions

Virginie Mortier, Ulrike Mathesius, Sofie Goormachtig

(2012) - Signaling and Communication in Plants

DOI
772. A general G1/S-phase cell-cycle control module in the flowering plant Arabidopsis thaliana.

Zhao X, Harashima H, Dissmeyer N, Pusch S, Weimer AK, Bramsiepe J, Bouyer D, Rademacher S, Nowack MK, Novak B, Sprunck S, Schnittger A

(2012) -

DOI
771. Control of Programmed Cell Death During Plant Reproductive Development

Yadira Olvera-Carrillo, Yuliya Salanenka, Moritz K. Nowack

(2012) - Biocommunication of Plants

DOI
770. Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis

Grunewald, Wim, De Smet, Ive, Lewis, Daniel R., Loefke, Christian, Jansen, Leentje, Goeminne, Geert, Bossche, Robin Vanden, Karimi, Mansour, De Rybel, Bert, Vanholme, Bartel, Teichmann, Thomas, Boerjan, Wout, Van Montagu, Marc C. E., Gheysen, Godelieve, Muday, Gloria K., Friml, Jiri, Beeckman, Tom

(2012) - Proceedings of the National Academy of Sciences of the United States of America

DOI
769. Tackling Drought Stress: RECEPTOR-LIKE KINASES Present New Approaches

Marshall, Alex, Aalen, Reidunn B., Audenaert, Dominique, Beeckman, Tom, Broadley, Martin R., Butenko, Melinka A., Cano-Delgado, Ana I., de Vries, Sacco, Dresselhaus, Thomas, Felix, Georg, Graham, Neil S., Foulkes, John, Granier, Christine, Greb, Thomas, Grossniklaus, Ueli, Hammond, John P., Heidstra, Renze, Hodgman, Charlie, Hothorn, Michael, Inze, Dirk, Ostergaard, Lars, Russinova, Eugenia, Simon, Ruediger, Skirycz, Aleksandra, Stahl, Yvonne, Zipfel, Cyril, De Smete, Ive

(2012) - Plant Cell

DOI
768. Root system architecture: insights from Arabidopsis and cereal crops Introduction

Smith, Stephanie, De Smet, Ive

(2012) - Philosophical Transactions of the Royal Society B-Biological Sciences

DOI
767. Lateral root initiation: one step at a time

De Smet, Ive

(2012) - New Phytologist

DOI
766. In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis

Parizot, Boris, Roberts, Ianto, Raes, Jeroen, Beeckman, Tom, De Smet, Ive

(2012) - Philosophical Transactions of the Royal Society B-Biological Sciences

DOI
765. Systems Analysis of Plant Functional, Transcriptional, Physical Interaction, and Metabolic Networks

Bassel, George W., Gaudinier, Allison, Brady, Siobhan M., Hennig, Lars, Rhee, Seung Y., De Smet, Ive

(2012) - Plant Cell

DOI
764. Small Signaling Peptides in Arabidopsis Development: How Cells Communicate Over a Short Distance

Murphy, Evan, Smith, Stephanie, De Smet, Ive

(2012) - Plant Cell

DOI
763. Analyzing Lateral Root Development: How to Move Forward

De Smet, Ive, White, Philip J., Bengough, A. Glyn, Dupuy, Lionel, Parizot, Boris, Casimiro, Ilda, Heidstra, Renze, Laskowski, Marta, Lepetit, Marc, Hochholdinger, Frank, Draye, Xavier, Zhang, Hanma, Broadley, Martin R., Peret, Benjamin, Hammond, John P., Fukaki, Hidehiro, Mooney, Sacha, Lynch, Jonathan P., Nacry, Phillipe, Schurr, Ulrich, Laplaze, Laurent, Benfey, Philip, Beeckman, Tom, Bennett, Malcolm

(2012) - Plant Cell

DOI
762. Characterization of a RABE (Ras gene from rat brain E) GTPase expressed during morphogenesis in the unicellular green alga Micrasterias denticulata (zygnematophyceae, streptophyta)

Vannerum K, De Rycke R, Pollier J, Goossens A, Inzé D, Vyverman W

(2012) - Journal of Phycology

No link available
761. Arabidopsis ULTRAVIOLET-B-INSENSITIVE4 maintains cell division activity by temporal inhibition of the anaphase-promoting complex/cyclosome.

Heyman J, Van den Daele H, De Wit K, Boudolf V, Berckmans B, Verkest A, Alvim Kamei CL, De Jaeger G, Koncz C, De Veylder L

(2011/12) -

DOI
760. New insights into the control of endoreduplication: endoreduplication could be driven by organ growth in Arabidopsis leaves.

Massonnet C, Tisné S, Radziejwoski A, Vile D, De Veylder L, Dauzat M, Granier C

(2011/12) -

DOI
759. Syringyl Lignin Is Unaltered by Severe Sinapyl Alcohol Dehydrogenase Suppression in Tobacco

Abdellah Barakate, Jennifer Stephens, Alison Goldie, William N. Hunter, David Marshall, Robert D. Hancock, Catherine Lapierre, Kris Morreel, Wout Boerjan, Claire Halpin

(2011/12) - The Plant Cell

DOI
758. Transcriptional analysis of cell growth and morphogenesis in the unicellular green alga Micrasterias(Streptophyta), with emphasis on the role of expansin

Katrijn Vannerum, Marie JJ Huysman, Riet De Rycke, Marnik Vuylsteke, Frederik Leliaert, Jacob Pollier, Ursula Lütz-Meindl, Jeroen Gillard, Lieven De Veylder, Alain Goossens, Dirk Inzé, Wim Vyverman

(2011/12) - BMC Plant Biology

DOI
757. Arabidopsis α Aurora kinases function in formative cell division plane orientation.

Van Damme D, De Rybel B, Gudesblat G, Demidov D, Grunewald W, De Smet I, Houben A, Beeckman T, Russinova E

(2011/11) -

DOI
756. Molecular control and function of endoreplication in development and physiology.

De Veylder L, Larkin JC, Schnittger A

(2011/11) -

DOI
755. The E2F transcription factor family regulates CENH3 expression in Arabidopsis thaliana.

Heckmann S, Lermontova I, Berckmans B, De Veylder L, Bäumlein H, Schubert I

(2011/11) -

DOI
754. Light-dependent regulation of DEL1 is determined by the antagonistic action of E2Fb and E2Fc.

Berckmans B, Lammens T, Van Den Daele H, Magyar Z, Bögre L, De Veylder L

(2011/11) -

DOI
753. Nodulation of Aeschynomene afraspera and A. indica by photosynthetic Bradyrhizobium Sp. strain ORS285: the nod-dependent versus the nod-independent symbiotic interaction.

Bonaldi K, Gargani D, Prin Y, Fardoux J, Gully D, Nouwen N, Goormachtig S, Giraud E

(2011/11) -

DOI
752. Arabidopsis α Aurora kinases function in formative cell division plane orientation.

Van Damme D, De Rybel B, Gudesblat G, Demidov D, Grunewald W, De Smet I, Houben A, Beeckman T, Russinova E

(2011/11) - The Plant cell

DOI
751. Arabidopsis α Aurora kinases function in formative cell division plane orientation.

Van Damme D, De Rybel B, Gudesblat G, Demidov D, Grunewald W, De Smet I, Houben A, Beeckman T, Russinova E

(2011/11) - The Plant Cell

DOI
750. Phosphorylation of a mitotic kinesin-like protein and a MAPKKK by cyclin-dependent kinases (CDKs) is involved in the transition to cytokinesis in plants.

Sasabe M, Boudolf V, De Veylder L, Inzé D, Genschik P, Machida Y

(2011/10) -

DOI
749. Auxin-dependent cell cycle reactivation through transcriptional regulation of Arabidopsis E2Fa by lateral organ boundary proteins.

Berckmans B, Vassileva V, Schmid SP, Maes S, Parizot B, Naramoto S, Magyar Z, Alvim Kamei CL, Koncz C, Bögre L, Persiau G, De Jaeger G, Friml J, Simon R, Beeckman T, De Veylder L

(2011/10) -

DOI
748. Clusters of bioactive compounds target dynamic endomembrane networks in vivo.

Drakakaki G, Robert S, Szatmari AM, Brown MQ, Nagawa S, Van Damme D, Leonard M, Yang Z, Girke T, Schmid SL, Russinova E, Friml J, Raikhel NV, Hicks GR

(2011/10) - Proceedings of the National Academy of Sciences of the United States of America

DOI
747. Auxin-Dependent Cell Cycle Reactivation through Transcriptional Regulation ofArabidopsis E2Faby Lateral Organ Boundary Proteins

Barbara Berckmans, Valya Vassileva, Stephan P.C. Schmid, Sara Maes, Boris Parizot, Satoshi Naramoto, Zoltan Magyar, Claire Lessa Alvim Kamei, Csaba Koncz, Laszlo Bögre, Geert Persiau, Geert De Jaeger, Jiří Friml, Rüdiger Simon, Tom Beeckman, Lieven De Veylder

(2011/10) - The Plant Cell

DOI
746. An Integrated PCR Colony Hybridization Approach to Screen cDNA Libraries for Full-Length Coding Sequences

Jacob Pollier, Miguel González-Guzmán, Wilson Ardiles-Diaz, Danny Geelen, Alain Goossens

(2011/09) - PLoS ONE

DOI
745. The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade

Laurens Pauwels, Alain Goossens

(2011/09) - The Plant Cell

DOI
744. The relationship between TXS, DBAT, BAPT and DBTNBT gene expression and taxane production during the development of Taxus baccata plantlets

M. Onrubia, E. Moyano, M. Bonfill, J. Palazón, A. Goossens, R.M. Cusidó

(2011/09) - Plant Science

DOI
743. Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis.

Vanneste S, Coppens F, Lee E, Donner TJ, Xie Z, Van Isterdael G, Dhondt S, De Winter F, De Rybel B, Vuylsteke M, De Veylder L, Friml J, Inzé D, Grotewold E, Scarpella E, Sack F, Beemster GT, Beeckman T

(2011/08) -

DOI
742. Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis.

Vanneste S, Coppens F, Lee E, Donner TJ, Xie Z, Van Isterdael G, Dhondt S, De Winter F, De Rybel B, Vuylsteke M, De Veylder L, Friml J, Inzé D, Grotewold E, Scarpella E, Sack F, Beemster GT, Beeckman T

(2011/08) -

DOI
741. Model-based analysis of Arabidopsis leaf epidermal cells reveals distinct division and expansion patterns for pavement and guard cells.

Asl LK, Dhondt S, Boudolf V, Beemster GT, Beeckman T, Inzé D, Govaerts W, De Veylder L

(2011/08) -

DOI
740. Morphological classification of plant cell deaths

van Doorn WG, Beers EP, Dangl JL, Franklin-Tong VE, Gallois P, Hara-Nishimura I, Jones AM, Kawai-Yamada M, Lam E, Mundy J, Mur LAJ, Petersen M, Smertenko A, Taliansky M, Van Breusegem F, Wolpert T, Woltering E, Zhivotovsky B, Bozhkov PV

(2011/08) - Cell Death and Differentiation

DOI
739. Large‐scale detection of rare variants via pooled multiplexed next‐generation sequencing: towards next‐generation Ecotilling

Fabio Marroni, Sara Pinosio, Eleonora Di Centa, Irena Jurman, Wout Boerjan, Nicoletta Felice, Federica Cattonaro, Michele Morgante

(2011/08) - The Plant Journal

DOI
738. Transcriptional and post-transcriptional regulation of a NAC1 transcription factor in Medicago truncatula roots.

D'haeseleer K, Den Herder G, Laffont C, Plet J, Mortier V, Lelandais-Brière C, De Bodt S, De Keyser A, Crespi M, Holsters M, Frugier F, Goormachtig S

(2011/08) -

DOI
737. The APC/C subunit 10 plays an essential role in cell proliferation during leaf development.

Eloy NB, de Freitas Lima M, Van Damme D, Vanhaeren H, Gonzalez N, De Milde L, Hemerly AS, Beemster GT, Inzé D, Ferreira PC

(2011/08) - The Plant journal : for cell and molecular biology

DOI
736. Model-Based Analysis of Arabidopsis Leaf Epidermal Cells Reveals Distinct Division and Expansion Patterns for Pavement and Guard Cells

Leila Kheibarshekan Asl, Stijn Dhondt, Véronique Boudolf, Gerrit T.S. Beemster, Tom Beeckman, Dirk Inzé, Willy Govaerts, Lieven De Veylder

(2011/08) - Plant Physiology

DOI
735. A versatile set of ligation-independent cloning vectors for functional studies in plants.

De Rybel B, van den Berg W, Lokerse A, Liao CY, van Mourik H, Möller B, Peris CL, Weijers D

(2011/07) -

DOI
734. Identification of putative CLE peptide receptors involved in determinate nodulation on soybean.

Mortier V, Fenta BA, Kunert K, Holsters M, Goormachtig S

(2011/07) -

DOI
733. Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis.

Vanneste S, Coppens F, Lee E, Donner TJ, Xie Z, Van Isterdael G, Dhondt S, De Winter F, De Rybel B, Vuylsteke M, De Veylder L, Friml J, Inzé D, Grotewold E, Scarpella E, Sack F, Beemster GT, Beeckman T

(2011/07) - The EMBO Journal

DOI
732. ROS signaling: the new wave?

Mittler R, Vanderauwera S, Suzuki N, Miller G, Tognetti VB, Vandepoele K, Gollery M, Shulaev V, Van Breusegem F

(2011/06) -

DOI
731. Metabolite Profiling of Triterpene Saponins in Medicago truncatula Hairy Roots by Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

Jacob Pollier, Kris Morreel, Danny Geelen, Alain Goossens

(2011/06) - Journal of Natural Products

DOI
730. APETALA2/ETHYLENE RESPONSE FACTOR and basic helix–loop–helix tobacco transcription factors cooperatively mediate jasmonate‐elicited nicotine biosynthesis

Kathleen De Boer, Sofie Tilleman, Laurens Pauwels, Robin Vanden Bossche, Valerie De Sutter, Rudy Vanderhaeghen, Pierre Hilson, John D. Hamill, Alain Goossens

(2011/06) - The Plant Journal

DOI
729. A novel protein family mediates Casparian strip formation in the endodermis.

Roppolo D, De Rybel B, Dénervaud Tendon V, Pfister A, Alassimone J, Vermeer JE, Yamazaki M, Stierhof YD, Beeckman T, Geldner N

(2011/05) -

DOI
728. Metacaspases

Tsiatsiani L, Van Breusegem F, Gallois P, Zavialov A, Lam E, Bozhkov PV

(2011/05) - Cell Death and Differentiation

DOI
727. Temperature signals contribute to the timing of photoperiodic growth cessation and bud set in poplar

A. Rohde, C. Bastien, W. Boerjan

(2011/05) - Tree Physiology

DOI
726. Search for nodulation-related CLE genes in the genome of Glycine max.

Mortier V, Fenta BA, Martens C, Rombauts S, Holsters M, Kunert K, Goormachtig S

(2011/05) -

DOI
725. A novel protein family mediates Casparian strip formation in the endodermis

Daniele Roppolo, Bert De Rybel, Valérie Dénervaud Tendon, Alexandre Pfister, Julien Alassimone, Joop E. M. Vermeer, Misako Yamazaki, York-Dieter Stierhof, Tom Beeckman, Niko Geldner

(2011/05) - Nature

DOI
724. The Arabidopsis thaliana checkpoint kinase WEE1 protects against premature vascular differentiation during replication stress.

Cools T, Iantcheva A, Weimer AK, Boens S, Takahashi N, Maes S, Van den Daele H, Van Isterdael G, Schnittger A, De Veylder L

(2011/04) -

DOI
723. Recent Progress in Development of Tnt1 Functional Genomics Platform for Medicago truncatula and Lotus japonicus in Bulgaria.

Revalska M, Vassileva V, Goormachtig S, Van Hautegem T, Ratet P, Iantcheva A

(2011/04) -

DOI
722. Jasmonate signaling involves the abscisic acid receptor PYL4 to regulate metabolic reprogramming in Arabidopsis and tobacco

Petri Lackman, Miguel González-Guzmán, Sofie Tilleman, Inês Carqueijeiro, Amparo Cuéllar Pérez, Tessa Moses, Mitsunori Seo, Yuri Kanno, Suvi T. Häkkinen, Marc C. E. Van Montagu, Johan M. Thevelein, Hannu Maaheimo, Kirsi-Marja Oksman-Caldentey, Pedro L. Rodriguez, Heiko Rischer, Alain Goossens

(2011/04) - Proceedings of the National Academy of Sciences

DOI
721. Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family.

Babiychuk E, Vandepoele K, Wissing J, Garcia-Diaz M, De Rycke R, Akbari H, Joubès J, Beeckman T, Jänsch L, Frentzen M, Van Montagu MC, Kushnir S

(2011/04) - Proceedings of the National Academy of Sciences of the United States of America

DOI
720. A kaleidoscopic view of the Arabidopsis core cell cycle interactome.

Van Leene J, Boruc J, De Jaeger G, Russinova E, De Veylder L

(2011/03) -

DOI
719. Survival and growth of Arabidopsis plants given limited water are not equal.

Skirycz A, Vandenbroucke K, Clauw P, Maleux K, De Meyer B, Dhondt S, Pucci A, Gonzalez N, Hoeberichts F, Tognetti VB, Galbiati M, Tonelli C, Van Breusegem F, Vuylsteke M, Inzé D

(2011/03) -

DOI
718. Duplicate Retention After Small- and Large-Scale Duplications

Steven Maere, Yves Van de Peer

(2011/03) - Evolution after Gene Duplication

DOI
717. Polycomb repressive complex 2 controls the embryo-to-seedling phase transition.

Bouyer D, Roudier F, Heese M, Andersen ED, Gey D, Nowack MK, Goodrich J, Renou JP, Grini PE, Colot V, Schnittger A

(2011/03) -

DOI
716. Asymmetric cell division in land plants and algae: the driving force for differentiation.

De Smet I, Beeckman T

(2011/03) - Nature Reviews. Molecular Cell Biology

DOI
715. Genomes: the truth is in there

Yves Van de Peer

(2011/02) - EMBO Reports

DOI
714. TheArabidopsisbHLH Transcription Factors MYC3 and MYC4 Are Targets of JAZ Repressors and Act Additively with MYC2 in the Activation of Jasmonate Responses

Patricia Fernández-Calvo, Andrea Chini, Gemma Fernández-Barbero, José-Manuel Chico, Selena Gimenez-Ibanez, Jan Geerinck, Dominique Eeckhout, Fabian Schweizer, Marta Godoy, José Manuel Franco-Zorrilla, Laurens Pauwels, Erwin Witters, María Isabel Puga, Javier Paz-Ares, Alain Goossens, Philippe Reymond, Geert De Jaeger, Roberto Solano

(2011/02) - The Plant Cell

DOI
713. The auxin signalling network translates dynamic input into robust patterning at the shoot apex

Teva Vernoux, Géraldine Brunoud, Etienne Farcot, Valérie Morin, Hilde Van den Daele, Jonathan Legrand, Marina Oliva, Pradeep Das, Antoine Larrieu, Darren Wells, Yann Guédon, Lynne Armitage, Franck Picard, Soazig Guyomarc'h, Coralie Cellier, Geraint Parry, Rachil Koumproglou, John H Doonan, Mark Estelle, Christophe Godin, Stefan Kepinski, Malcolm Bennett, Lieven De Veylder, Jan Traas

(2011/01) - Molecular Systems Biology

DOI
712. Atypical E2F activity coordinates PHR1 photolyase gene transcription with endoreduplication onset.

Radziejwoski A, Vlieghe K, Lammens T, Berckmans B, Maes S, Jansen MA, Knappe C, Albert A, Seidlitz HK, Bahnweg G, Inzé D, De Veylder L

(2011/01) -

DOI
711. Extranuclear protection of chromosomal DNA from oxidative stress.

Vanderauwera S, Suzuki N, Miller G, van de Cotte B, Morsa S, Ravanat JL, Hegie A, Triantaphylidès C, Shulaev V, Van Montagu MC, Van Breusegem F, Mittler R

(2011/01) -

DOI
710. WAT1 (WALLS ARE THIN1) defines a novel auxin transporter in plants and integrates auxin signaling in secondary wall formation in Arabidopsis fibers

Ranocha P, Dima O, Felten J, Freydier A, Hoffmann L, Ljung K, Lacombe B, Corratgé C, Thibaud J, Sundberg B, Boerjan W, Goffner D

(2011/01) - BMC Proceedings

DOI
709. Environmental impact assessment and monitoring of genetically modified trees

Gallardo F, Ionita L, Ruohonen-Lehto M, Harfouche A, Biricolti S, Boerjan W, Glandorf B, Jouanin L, Fladung M, Vettori C

(2011/01) - BMC Proceedings

DOI
708. Science, society and biosafety of a field trial with transgenic biofuel poplars

Van Acker R, Storme V, Goeminne G, Ivens B, Custers R, Aerts D, Soetaert W, Ralph J, Santoro N, Leplé J, Pilate G, Boerjan W

(2011/01) - BMC Proceedings

No link available
707. Bud set in poplar – genetic dissection of a complex trait in natural and hybrid populations

Antje Rohde, Véronique Storme, Véronique Jorge, Muriel Gaudet, Nicola Vitacolonna, Francesco Fabbrini, Tom Ruttink, Giusi Zaina, Nicolas Marron, Sophie Dillen, Marijke Steenackers, Maurizio Sabatti, Michele Morgante, Wout Boerjan, Catherine Bastien

(2011/01) - New Phytologist

DOI
706. Dissection of the phytohormonal regulation of trichome formation and biosynthesis of the antimalarial compound artemisinin in Artemisia annua plants

Lies Maes, Filip C. W. Van Nieuwerburgh, Yansheng Zhang, Darwin W. Reed, Jacob Pollier, Sofie R. F. Vande Casteele, Dirk Inzé, Patrick S. Covello, Dieter L. D. Deforce, Alain Goossens

(2011/01) - New Phytologist

DOI
705. Strigolactones affect lateral root formation and root-hair elongation in Arabidopsis

Yoram Kapulnik, Pierre-Marc Delaux, Natalie Resnick, Einav Mayzlish-Gati, Smadar Wininger, Chaitali Bhattacharya, Nathalie Séjalon-Delmas, Jean-Philippe Combier, Guillaume Bécard, Eduard Belausov, Tom Beeckman, Evgenia Dor, Joseph Hershenhorn, Hinanit Koltai

(2011/01) - Planta

DOI
704. Unraveling the Evolution of Auxin Signaling

Ive De Smet, Ute Voß, Steffen Lau, Michael Wilson, Ning Shao, Ruth E. Timme, Ranjan Swarup, Ian Kerr, Charlie Hodgman, Ralph Bock, Malcolm Bennett, Gerd Jürgens, Tom Beeckman

(2011/01) - Plant Physiology

DOI
703. The genome of Tetranychus urticae reveals herbivorous pest adaptations

Grbic, Miodrag, Van Leeuwen, Thomas, Clark, Richard M., Rombauts, Stephane, Rouze, Pierre, Grbic, Vojislava, Osborne, Edward J., Dermauw, Wannes, Phuong Cao Thi Ngoc, Ortego, Felix, Hernandez-Crespo, Pedro, Diaz, Isabel, Martinez, Manuel, Navajas, Maria, Sucena, Elio, Magalhaes, Sara, Nagy, Lisa, Pace, Ryan M., Djuranovic, Sergej, Smagghe, Guy, Iga, Masatoshi, Christiaens, Olivier, Veenstra, Jan A., Ewer, John, Mancilla Villalobos, Rodrigo, Hutter, Jeffrey L., Hudson, Stephen D., Velez, Marisela, Yi, Soojin V., Zeng, Jia, Pires-daSilva, Andre, Roch, Fernando, Cazaux, Marc, Navarro, Marie, Zhurov, Vladimir, Acevedo, Gustavo, Bjelica, Anica, Fawcett, Jeffrey A., Bonnet, Eric, Martens, Cindy, Baele, Guy, Wissler, Lothar, Sanchez-Rodriguez, Aminael, Tirry, Luc, Blais, Catherine, Demeestere, Kristof, Henz, Stefan R., Gregory, T. Ryan, Mathieu, Johannes, Verdon, Lou, Farinelli, Laurent, Schmutz, Jeremy, Lindquist, Erika, Feyereisen, Rene, Van de Peer, Yves

(2011) - Nature

DOI
702. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

Hu, T.T., Pattyn, P., Bakker, E.G., Cao, J., Cheng, J.-F., Clark, R.M., Fahlgren, N., Fawcett, J.A., Grimwood, J., Gundlach, H., Haberer, G., Hollister, J.D., Ossowski, S., Ottilar, R.P., Salamov, A.A., Schneeberger, K., Spannagl, M., Wang, X., Yang, L., Nasrallah, M.E., Bergelson, J., Carrington, J.C., Gaut, B.S., Schmutz, J., Mayer, K.F.X., Van De Peer, Y., Grigoriev, I.V., Nordborg, M., Weigel, D., Guo, Y.-L.

(2011) - Nature Genetics

DOI
701. Peakbin Selection in Mass Spectrometry Data Using a Consensus Approach with Estimation of Distribution Algorithms

Armananzas, Ruben, Saeys, Yvan, Inza, Inaki, Garcia-Torres, Miguel, Bielza, Concha, van de Peer, Yves, Larranaga, Pedro

(2011) - Ieee-Acm Transactions on Computational Biology and Bioinformatics

DOI
700. U-Compare bio-event meta-service: compatible BioNLP event extraction services

Kano, Yoshinobu, Bjoerne, Jari, Ginter, Filip, Salakoski, Tapio, Buyko, Ekaterina, Hahn, Udo, Cohen, K. Bretonnel, Verspoor, Karin, Roeder, Christophe, Hunter, Lawrence E., Kilicoglu, Halil, Bergler, Sabine, Van Landeghem, Sofie, Van Parys, Thomas, Van de Peer, Yves, Miwa, Makoto, Ananiadou, Sophia, Neves, Mariana, Pascual-Montano, Alberto, Ozgur, Arzucan, Radev, Dragomir R., Riedel, Sebastian, Saetre, Rune, Chun, Hong-Woo, Kim, Jin-Dong, Pyysalo, Sampo, Ohta, Tomoko, Tsujii, Jun'ichi

(2011) - Bmc Bioinformatics

DOI
699. Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast

Joshi, Anagha, Van de Peer, Yves, Michoel, Tom

(2011) - Nucleic Acids Research

DOI
698. Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Duplessis, Sebastien, Cuomo, Christina A., Lin, Yao-Cheng, Aerts, Andrea, Tisserant, Emilie, Veneault-Fourrey, Claire, Joly, David L., Hacquard, Stephane, Amselem, Joelle, Cantarel, Brandi L., Chiu, Readman, Coutinho, Pedro M., Feau, Nicolas, Field, Matthew, Frey, Pascal, Gelhaye, Eric, Goldberg, Jonathan, Grabherr, Manfred G., Kodira, Chinnappa D., Kohler, Annegret, Kuees, Ursula, Lindquist, Erika A., Lucas, Susan M., Mago, Rohit, Mauceli, Evan, Morin, Emmanuelle, Murat, Claude, Pangilinan, Jasmyn L., Park, Robert, Pearson, Matthew, Quesneville, Hadi, Rouhier, Nicolas, Sakthikumar, Sharadha, Salamov, Asaf A., Schmutz, Jeremy, Selles, Benjamin, Shapiro, Harris, Tanguay, Philippe, Tuskan, Gerald A., Henrissat, Bernard, Van de Peer, Yves, Rouze, Pierre, Ellis, Jeffrey G., Dodds, Peter N., Schein, Jacqueline E., Zhong, Shaobin, Hamelin, Richard C., Grigoriev, Igor V., Szabo, Les J., Martin, Francis

(2011) - Proceedings of the National Academy of Sciences of the United States of America

DOI
697. The Medicago genome provides insight into the evolution of rhizobial symbioses

Young, Nevin D., Debelle, Frederic, Oldroyd, Giles E. D., Geurts, Rene, Cannon, Steven B., Udvardi, Michael K., Benedito, Vagner A., Mayer, Klaus F. X., Gouzy, Jerome, Schoof, Heiko, Van de Peer, Yves, Proost, Sebastian, Cook, Douglas R., Meyers, Blake C., Spannagl, Manuel, Cheung, Foo, De Mita, Stephane, Krishnakumar, Vivek, Gundlach, Heidrun, Zhou, Shiguo, Mudge, Joann, Bharti, Arvind K., Murray, Jeremy D., Naoumkina, Marina A., Rosen, Benjamin, Silverstein, Kevin A. T., Tang, Haibao, Rombauts, Stephane, Zhao, Patrick X., Zhou, Peng, Barbe, Valerie, Bardou, Philippe, Bechner, Michael, Bellec, Arnaud, Berger, Anne, Berges, Helene, Bidwell, Shelby, Bisseling, Ton, Choisne, Nathalie, Couloux, Arnaud, Denny, Roxanne, Deshpande, Shweta, Dai, Xinbin, Doyle, Jeff J., Dudez, Anne-Marie, Farmer, Andrew D., Fouteau, Stephanie, Franken, Carolien, Gibelin, Chrystel, Gish, John, Goldstein, Steven, Gonzalez, Alvaro J., Green, Pamela J., Hallab, Asis, Hartog, Marijke, Hua, Axin, Humphray, Sean J., Jeong, Dong-Hoon, Jing, Yi, Joecker, Anika, Kenton, Steve M., Kim, Dong-Jin, Klee, Kathrin, Lai, Hongshing, Lang, Chunting, Lin, Shaoping, Macmil, Simone L., Magdelenat, Ghislaine, Matthews, Lucy, McCorrison, Jamison, Monaghan, Erin L., Mun, Jeong-Hwan, Najar, Fares Z., Nicholson, Christine, Noirot, Celine, O'Bleness, Majesta, Paule, Charles R., Poulain, Julie, Prion, Florent, Qin, Baifang, Qu, Chunmei, Retzel, Ernest F., Riddle, Claire, Sallet, Erika, Samain, Sylvie, Samson, Nicolas, Sanders, Iryna, Saurat, Olivier, Scarpelli, Claude, Schiex, Thomas, Segurens, Beatrice, Severin, Andrew J., Sherrier, D. Janine, Shi, Ruihua, Sims, Sarah, Singer, Susan R., Sinharoy, Senjuti, Sterck, Lieven, Viollet, Agnes, Wang, Bing-Bing, Wang, Keqin, Wang, Mingyi, Wang, Xiaohong, Warfsmann, Jens, Weissenbach, Jean, White, Doug D., White, Jim D., Wiley, Graham B., Wincker, Patrick, Xing, Yanbo, Yang, Limei, Yao, Ziyun, Ying, Fu, Zhai, Jixian, Zhou, Liping, Zuber, Antoine, Denarie, Jean, Dixon, Richard A., May, Gregory D., Schwartz, David C., Rogers, Jane, Quetier, Francis, Town, Christopher D., Roe, Bruce A.

(2011) - Nature

DOI
696. Journey through the past: 150 million years of plant genome evolution

Proost, Sebastian, Pattyn, Pedro, Gerats, Tom, Van de Peer, Yves

(2011) - Plant Journal

DOI
695. HIGH-PRECISION BIO-MOLECULAR EVENT EXTRACTION FROM TEXT USING PARALLEL BINARY CLASSIFIERS

Van Landeghem, Sofie, De Baets, Bernard, Van de Peer, Yves, Saeys, Yvan

(2011) - Computational Intelligence

DOI
694. Comparative Network Analysis Reveals That Tissue Specificity and Gene Function Are Important Factors Influencing the Mode of Expression Evolution in Arabidopsis and Rice

Movahedi, Sara, Van de Peer, Yves, Vandepoele, Klaas

(2011) - Plant Physiology

DOI
693. CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks

Audenaert, Pieter, Van Parys, Thomas, Brondel, Florian, Pickavet, Mario, Demeester, Piet, Van de Peer, Yves, Michoel, Tom

(2011) - Bioinformatics

DOI
692. Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks

Michoel, Tom, Joshi, Anagha, Nachtergaele, Bruno, Van de Peer, Yves

(2011) - Molecular Biosystems

DOI
691. A mystery unveiled

Yves Van de Peer

(2011) - Genome Biology

DOI
690. Duplicate Retention After Small- and Large-Scale Duplications

Maere, S., Van de Peer, Y.

(2011) - Evolution after Gene Duplication

DOI
689. Context-dependent codon partition models provide significant increases in model fit in atpB and rbcL protein-coding genes

Baele, Guy, Van de Peer, Yves, Vansteelandt, Stijn

(2011) - Bmc Evolutionary Biology

DOI
688. A greedy, graph-based algorithm for the alignment of multiple homologous gene lists

Fostier, Jan, Proost, Sebastian, Dhoedt, Bart, Saeys, Yvan, Demeester, Piet, Van de Peer, Yves, Vandepoele, Klaas

(2011) - Bioinformatics

DOI
687. Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine

Chancerel, Emilie, Lepoittevin, Camille, Le Provost, Gregoire, Lin, Yao-Cheng, Jaramillo-Correa, Juan Pablo, Eckert, Andrew J., Wegrzyn, Jill L., Zelenika, Diana, Boland, Anne, Frigerio, Jean-Marc, Chaumeil, Philippe, Garnier-Gere, Pauline, Boury, Christophe, Grivet, Delphine, Gonzalez-Martinez, Santiago C., Rouze, Pierre, Van de Peer, Yves, Neale, David B., Cervera, Maria T., Kremer, Antoine, Plomion, Christophe

(2011) - Bmc Genomics

DOI
686. Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

Coyne, Robert S., Hannick, Linda, Shanmugam, Dhanasekaran, Hostetler, Jessica B., Brami, Daniel, Joardar, Vinita S., Johnson, Justin, Radune, Diana, Singh, Irtisha, Badger, Jonathan H., Kumar, Ujjwal, Saier, Milton, Wang, Yufeng, Cai, Hong, Gu, Jianying, Mather, Michael W., Vaidya, Akhil B., Wilkes, David E., Rajagopalan, Vidyalakshmi, Asai, David J., Pearson, Chad G., Findly, Robert C., Dickerson, Harry W., Wu, Martin, Martens, Cindy, Van de Peer, Yves, Roos, David S., Cassidy-Hanley, Donna M., Clark, Theodore G.

(2011) - Genome Biology

DOI
685. Transcriptional analysis of cell growth and morphogenesis in the unicellular green alga Micrasterias (Streptophyta), with emphasis on the role of expansin.

Vannerum K, Huysman MJ, De Rycke R, Vuylsteke M, Leliaert F, Pollier J, Lütz-Meindl U, Gillard J, De Veylder L, Goossens A, Inzé D, Vyverman W

(2011) -

DOI
684. Potential use of a serpin from Arabidopsis for pest control.

Alvarez-Alfageme F, Maharramov J, Carrillo L, Vandenabeele S, Vercammen D, Van Breusegem F, Smagghe G

(2011) -

DOI
683. PiNGO: a Cytoscape plugin to find candidate genes in biological networks

Smoot, Michael, Ono, Keiichiro, Ideker, Trey, Maere, Steven

(2011) - Bioinformatics

DOI
682. Auxin triggers a genetic switch

Lau, S., De Smet, I., Kolb, M., Meinhardt, H., Jurgens, G.

(2011) - Nature Cell Biology

DOI
681. Asymmetric cell division in land plants and algae: the driving force for differentiation

De Smet, I., Beeckman, T.

(2011) - Nature Reviews Molecular Cell Biology

DOI
680. Arabidopsis alpha Aurora Kinases Function in Formative Cell Division Plane Orientation

Van Damme, Daniel, De Rybel, Bert, Gudesblat, Gustavo, Demidov, Dmitri, Grunewald, Wim, De Smet, Ive, Houben, Andreas, Beeckman, Tom, Russinova, Eugenia

(2011) - Plant Cell

DOI
679. Unraveling the Evolution of Auxin Signaling

De Smet, I., Voss, U., Lau, S., Wilson, M., Shao, N., Timme, R. E., Swarup, R., Kerr, I., Hodgman, C., Bock, R., Bennett, M., Jurgens, G., Beeckman, T.

(2011) - Plant Physiology

DOI
678. Asymmetric cell division in land plants and algae: the driving force for differentiation (vol 12, pg 177, 2011)

De Smet, Ive, Beeckman, Tom

(2011) - Nature Reviews Molecular Cell Biology

DOI
677. Combinatorial biosynthesis in plants: A (p)review on its potential and future exploitation

Jacob Pollier, Tessa Moses, Alain Goossens

(2011) - Natural Product Reports

DOI
676. The relationship between TXS, DBAT, BAPT and DBTNBT gene expression and taxane production during the development of Taxus baccata plantlets.

No contributors listed

(2011) - Plant Science

No link available
675. The regulatory network of cell-cycle progression is fundamentally different in plants versus yeast or metazoans.

Dissmeyer N, Weimer AK, De Veylder L, Novak B, Schnittger A

(2010/12) -

DOI
674. Arabidopsis type I metacaspases control cell death.

Coll NS, Vercammen D, Smidler A, Clover C, Van Breusegem F, Dangl JL, Epple P

(2010/12) -

DOI
673. Engineering traditional monolignols out of lignin by concomitant up-regulation of F5H1 and down-regulation of COMT in Arabidopsis

Ruben Vanholme, John Ralph, Takuya Akiyama, Fachuang Lu, Jorge Rencoret Pazo, Hoon Kim, Jørgen Holst Christensen, Brecht Van Reusel, Véronique Storme, Riet De Rycke, Antje Rohde, Kris Morreel, Wout Boerjan

(2010/12) - The Plant Journal

DOI
672. Adaptin-like protein TPLATE and clathrin recruitment during plant somatic cytokinesis occurs via two distinct pathways.

Van Damme D, Gadeyne A, Vanstraelen M, Inzé D, Van Montagu MC, De Jaeger G, Russinova E, Geelen D

(2010/12) - Proceedings of the National Academy of Sciences of the United States of America

DOI
671. A replication stress-induced synchronization method for Arabidopsis thaliana root meristems.

Cools T, Iantcheva A, Maes S, Van den Daele H, De Veylder L

(2010/11) -

DOI
670. Potential of Arabidopsis systems biology to advance the biofuel field

Ruben Vanholme, Rebecca Van Acker, Wout Boerjan

(2010/11) - Trends in Biotechnology

DOI
669. Meiotic progression in Arabidopsis is governed by complex regulatory interactions between SMG7, TDM1, and the meiosis I-specific cyclin TAM.

Bulankova P, Riehs-Kearnan N, Nowack MK, Schnittger A, Riha K

(2010/11) -

DOI
668. Arabidopsis kinetochore fiber-associated MAP65-4 cross-links microtubules and promotes microtubule bundle elongation.

Fache V, Gaillard J, Van Damme D, Geelen D, Neumann E, Stoppin-Mellet V, Vantard M

(2010/11) - The Plant cell

DOI
667. The roots of a new green revolution

Griet Den Herder, Gert Van Isterdael, Tom Beeckman, Ive De Smet

(2010/11) - Trends in Plant Science

DOI
666. A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity.

De Rybel B, Vassileva V, Parizot B, Demeulenaere M, Grunewald W, Audenaert D, Van Campenhout J, Overvoorde P, Jansen L, Vanneste S, Möller B, Wilson M, Holman T, Van Isterdael G, Brunoud G, Vuylsteke M, Vernoux T, De Veylder L, Inzé D, Weijers D

(2010/10) -

DOI
665. A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity.

De Rybel B, Vassileva V, Parizot B, Demeulenaere M, Grunewald W, Audenaert D, Van Campenhout J, Overvoorde P, Jansen L, Vanneste S, Möller B, Wilson M, Holman T, Van Isterdael G, Brunoud G, Vuylsteke M, Vernoux T, De Veylder L, Inzé D, Weijers D

(2010/10) -

DOI
664. Cyclin-dependent kinase activity maintains the shoot apical meristem cells in an undifferentiated state.

Gaamouche T, Manes CL, Kwiatkowska D, Berckmans B, Koumproglou R, Maes S, Beeckman T, Vernoux T, Doonan JH, Traas J, Inzé D, De Veylder L

(2010/10) -

DOI
663. Abscisic acid deficiency causes changes in cuticle permeability and pectin composition that influence tomato resistance to Botrytis cinerea.

Curvers K, Seifi H, Mouille G, de Rycke R, Asselbergh B, Van Hecke A, Vanderschaeghe D, Höfte H, Callewaert N, Van Breusegem F, Höfte M

(2010/10) -

DOI
662. Catalase function in plants: a focus on Arabidopsis mutants as stress-mimic models.

Mhamdi A, Queval G, Chaouch S, Vanderauwera S, Van Breusegem F, Noctor G

(2010/10) -

DOI
661. Mass Spectrometry-Based Fragmentation as an Identification Tool in Lignomics

Kris Morreel, Hoon Kim, Fachuang Lu, Oana Dima, Takuya Akiyama, Ruben Vanholme, Claudiu Niculaes, Geert Goeminne, Dirk Inzé, Eric Messens, John Ralph, Wout Boerjan

(2010/10) - Analytical Chemistry

DOI
660. A Novel Aux/IAA28 Signaling Cascade Activates GATA23-Dependent Specification of Lateral Root Founder Cell Identity

Bert De Rybel, Valya Vassileva, Boris Parizot, Marlies Demeulenaere, Wim Grunewald, Dominique Audenaert, Jelle Van Campenhout, Paul Overvoorde, Leentje Jansen, Steffen Vanneste, Barbara Möller, Michael Wilson, Tara Holman, Gert Van Isterdael, Géraldine Brunoud, Marnik Vuylsteke, Teva Vernoux, Lieven De Veylder, Dirk Inzé, Dolf Weijers, Malcolm J. Bennett, Tom Beeckman

(2010/10) - Current Biology

DOI
659. Perturbation of Indole-3-Butyric Acid Homeostasis by the UDP-GlucosyltransferaseUGT74E2ModulatesArabidopsisArchitecture and Water Stress Tolerance

Vanesa B. Tognetti, Olivier Van Aken, Kris Morreel, Korneel Vandenbroucke, Brigitte van de Cotte, Inge De Clercq, Sheila Chiwocha, Ricarda Fenske, Els Prinsen, Wout Boerjan, Bernard Genty, Keith A. Stubbs, Dirk Inzé, Frank Van Breusegem

(2010/09) - The Plant Cell

DOI
658. Transcription factor MtATB2: about nodulation, sucrose and senescence.

D'haeseleer K, De Keyser A, Goormachtig S, Holsters M

(2010/09) -

DOI
657. Peroxisomal hydrogen peroxide is coupled to biotic defense responses by ISOCHORISMATE SYNTHASE1 in a daylength-related manner.

Chaouch S, Queval G, Vanderauwera S, Mhamdi A, Vandorpe M, Langlois-Meurinne M, Van Breusegem F, Saindrenan P, Noctor G

(2010/08) -

DOI
656. Perturbation of indole-3-butyric acid homeostasis by the UDP-glucosyltransferase UGT74E2 modulates Arabidopsis architecture and water stress tolerance.

Tognetti VB, Van Aken O, Morreel K, Vandenbroucke K, van de Cotte B, De Clercq I, Chiwocha S, Fenske R, Prinsen E, Boerjan W, Genty B, Stubbs KA, Inzé D, Van Breusegem F

(2010/08) -

DOI
655. Walls are thin 1 (WAT1), an Arabidopsis homolog of Medicago truncatula NODULIN21, is a tonoplast-localized protein required for secondary wall formation in fibers

Philippe Ranocha, Nicolas Denancé, Ruben Vanholme, Amandine Freydier, Yves Martinez, Laurent Hoffmann, Lothar Köhler, Cécile Pouzet, Jean-Pierre Renou, Björn Sundberg, Wout Boerjan, Deborah Goffner

(2010/08) - The Plant Journal

DOI
654. Mass Spectrometry-Based Sequencing of Lignin Oligomers

Kris Morreel, Oana Dima, Hoon Kim, Fachuang Lu, Claudiu Niculaes, Ruben Vanholme, Rebecca Dauwe, Geert Goeminne, Dirk Inzé, Eric Messens, John Ralph, Wout Boerjan

(2010/08) - Plant Physiology

DOI
653. Perturbation of indole-3-butyric acid homeostasis by the UDP-glucosyltransferase UGT74E2 modulates Arabidopsis architecture and water stress tolerance.

Tognetti VB, Van Aken O, Morreel K, Vandenbroucke K, van de Cotte,B, De Clercq I, Chiwocha S, Fenske R, Prinsen E, Boerjan W, Genty B, Stubbs KA, Inzé D, Van Breusegem F

(2010/08) - The Plant Cell

DOI
652. Dissection of the one-MegaDalton JAZ1 protein complex

Jan Geerinck, Laurens Pauwels, Geert De Jaeger, Alain Goossens

(2010/08) - Plant Signaling & Behavior

DOI
651. Dissection of the one-MegaDalton JAZ1 protein complex.

Geerinck J, Pauwels L, De Jaeger G, Goossens A

(2010/08) -

No link available
650. The 20-year environmental safety record of GM trees

Christian Walter, Matthias Fladung, Wout Boerjan

(2010/07) - Nature Biotechnology

DOI
649. Modeling Lignin Polymerization. I. Simulation Model of Dehydrogenation Polymers

Frederik R.D. van Parijs, Kris Morreel, John Ralph, Wout Boerjan, Roeland M.H. Merks

(2010/07) - Plant Physiology

DOI
648. Genomic regions involved in productivity of two interspecific poplar families in Europe. 2. Biomass production and its relationships with tree architecture and phenology

Marron N, Storme V, Dillen SY, Bastien C, Ricciotti L, Salani F, Sabatti M, Rae AM, Ceulemans R, Boerjan W

(2010/07) - Tree Genetics & Genomes

DOI
647. Lignin Biosynthesis and Structure

Ruben Vanholme, Brecht Demedts, Kris Morreel, John Ralph, Wout Boerjan

(2010/07) - Plant Physiology

DOI
646. Cyclin-dependent kinase activity retains the shoot apical meristem cells in an undifferentiated state

Tarik Gaamouche, Carmem-Lara de O. Manes, Dorota Kwiatkowska, Barbara Berckmans, Rachel Koumproglou, Sara Maes, Tom Beeckman, Teva Vernoux, John Doonan, Jan Traas, Dirk Inzé, Lieven De Veylder

(2010/07) - The Plant Journal

DOI
645. TAPIR, a web server for the prediction of plant microRNA targets, including target mimics

Eric Bonnet, Ying He, Kenny Billiau, Yves Van de Peer

(2010/06) - Bioinformatics

DOI
644. Sequencing around 5-Hydroxyconiferyl Alcohol-Derived Units in Caffeic Acid O-Methyltransferase-Deficient Poplar Lignins

Fachuang Lu, Jane M. Marita, Catherine Lapierre, Lise Jouanin, Kris Morreel, Wout Boerjan, John Ralph

(2010/06) - Plant Physiology

DOI
643. Nitrate Contra Auxin: Nutrient Sensing by Roots

Tom Beeckman, Jiří Friml

(2010/06) - Developmental Cell

DOI
642. Auxin Control of Root Development

P. Overvoorde, H. Fukaki, T. Beeckman

(2010/06) - Cold Spring Harbor Perspectives in Biology

DOI
641. VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome data sets.

Parizot B, De Rybel B, Beeckman T

(2010/05) -

DOI
640. SIAMESE cooperates with the CDH1-like protein CCS52A1 to establish endoreplication in Arabidopsis thaliana trichomes.

Kasili R, Walker JD, Simmons LA, Zhou J, De Veylder L, Larkin JC

(2010/05) -

DOI
639. Prohibitins: mitochondrial partners in development and stress response.

Van Aken O, Whelan J, Van Breusegem F

(2010/05) -

DOI
638. CLE peptides control Medicago truncatula nodulation locally and systemically.

Mortier V, Den Herder G, Whitford R, Van de Velde W, Rombauts S, D'Haeseleer K, Holsters M, Goormachtig S

(2010/05) -

DOI
637. Multimodular auxin response controls lateral root development in Arabidopsis.

De Smet I

(2010/05) - Plant signaling & behavior

DOI
636. VisuaLRTC: A New View on Lateral Root Initiation by Combining Specific Transcriptome Data Sets

Boris Parizot, Bert De Rybel, Tom Beeckman

(2010/05) - Plant Physiology

DOI
635. Module Network Inference from a Cancer Gene Expression Data Set Identifies MicroRNA Regulated Modules

Eric Bonnet, Marianthi Tatari, Anagha Joshi, Tom Michoel, Kathleen Marchal, Geert Berx, Yves Van de Peer

(2010/04) - PLoS ONE

DOI
634. Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network.

Boruc J, Van den Daele H, Hollunder J, Rombauts S, Mylle E, Hilson P, Inzé D, De Veylder L, Russinova E

(2010/04) -

DOI
633. Sesbania rostrata: a case study of natural variation in legume nodulation.

Capoen W, Oldroyd G, Goormachtig S, Holsters M

(2010/04) -

DOI
632. Reproductive cross-talk: seed development in flowering plants.

Nowack MK, Ungru A, Bjerkan KN, Grini PE, Schnittger A

(2010/04) -

DOI
631. NINJA connects the co-repressor TOPLESS to jasmonate signalling

Laurens Pauwels, Gemma Fernández Barbero, Jan Geerinck, Sofie Tilleman, Wim Grunewald, Amparo Cuéllar Pérez, José Manuel Chico, Robin Vanden Bossche, Jared Sewell, Eduardo Gil, Gloria García-Casado, Erwin Witters, Dirk Inzé, Jeff A. Long, Geert De Jaeger, Roberto Solano, Alain Goossens

(2010/04) - Nature

DOI
630. A conditional mutation in Arabidopsis thaliana separase induces chromosome non-disjunction, aberrant morphogenesis and cyclin B1;1 stability.

Wu S, Scheible WR, Schindelasch D, Van Den Daele H, De Veylder L, Baskin TI

(2010/03) -

DOI
629. Water-tolerant legume nodulation.

Capoen W, Goormachtig S, Holsters M

(2010/03) -

DOI
628. Comparison of developmental and stress-induced nodule senescence in Medicago truncatula.

Pérez Guerra JC, Coussens G, De Keyser A, De Rycke R, De Bodt S, Van De Velde W, Goormachtig S, Holsters M

(2010/03) -

DOI
627. Bimodular auxin response controls organogenesis in Arabidopsis.

De Smet I, Lau S, Voss U, Vanneste S, Benjamins R, Rademacher EH, Schlereth A, De Rybel B, Vassileva V, Grunewald W, Naudts M, Levesque MP, Ehrismann JS, Inzé D, Luschnig C, Benfey PN, Weijers D, Van Montagu MC, Bennett MJ, Jürgens G

(2010/02) -

DOI
626. 2R or not 2R is not the question anymore

Yves Van de Peer, Steven Maere, Axel Meyer

(2010/02) - Nature Reviews Genetics

DOI
625. AGRONOMICS1: A New Resource for Arabidopsis Transcriptome Profiling

Hubert Rehrauer, Catharine Aquino, Wilhelm Gruissem, Stefan R. Henz, Pierre Hilson, Sascha Laubinger, Naira Naouar, Andrea Patrignani, Stephane Rombauts, Huan Shu, Yves Van de Peer, Marnik Vuylsteke, Detlef Weigel, Georg Zeller, Lars Hennig

(2010/02) - Plant Physiology

DOI
624. Hormone-mediated promotion of trichome initiation in plants is conserved but utilizes species- and trichome-specific regulatory mechanisms.

Maes L, Goossens A

(2010/02) -

No link available
623. Bimodular auxin response controls organogenesis in Arabidopsis

Ive De Smet, Steffen Lau, Ute Voß, Steffen Vanneste, René Benjamins, Eike H. Rademacher, Alexandra Schlereth, Bert De Rybel, Valya Vassileva, Wim Grunewald, Mirande Naudts, Mitchell P. Levesque, Jasmin S. Ehrismann, Dirk Inzé, Christian Luschnig, Philip N. Benfey, Dolf Weijers, Marc C. E. Van Montagu, Malcolm J. Bennett, Gerd Jürgens, Tom Beeckman

(2010/02) - Proceedings of the National Academy of Sciences

DOI
622. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

Jelle Van Leene, Jens Hollunder, Dominique Eeckhout, Geert Persiau, Eveline Van De Slijke, Hilde Stals, Gert Van Isterdael, Aurine Verkest, Sandy Neirynck, Yelle Buffel, Stefanie De Bodt, Steven Maere, Kris Laukens, Anne Pharazyn, Paulo C G Ferreira, Nubia Eloy, Charlotte Renne, Christian Meyer, Jean‐Denis Faure, Jens Steinbrenner, Jim Beynon, John C Larkin, Yves Van de Peer, Pierre Hilson, Martin Kuiper, Lieven De Veylder, Harry Van Onckelen, Dirk Inzé, Erwin Witters, Geert De Jaeger

(2010/01) - Molecular Systems Biology

DOI
621. The MCM-binding protein ETG1 aids sister chromatid cohesion required for postreplicative homologous recombination repair.

Takahashi N, Quimbaya M, Schubert V, Lammens T, Vandepoele K, Schubert I, Matsui M, Inzé D, Berx G, De Veylder L

(2010/01) -

DOI
620. Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress.

Skirycz A, De Bodt S, Obata T, De Clercq I, Claeys H, De Rycke R, Andriankaja M, Van Aken O, Van Breusegem F, Fernie AR, Inzé D

(2010/01) -

DOI
619. Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation.

Nelissen H, De Groeve S, Fleury D, Neyt P, Bruno L, Bitonti MB, Vandenbussche F, Van der Straeten D, Yamaguchi T, Tsukaya H, Witters E, De Jaeger G, Houben A, Van Lijsebettens M

(2010/01) -

DOI
618. Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling

Marie JJ Huysman, Cindy Martens, Klaas Vandepoele, Jeroen Gillard, Edda Rayko, Marc Heijde, Chris Bowler, Dirk Inzé, Yves Peer, Lieven De Veylder, Wim Vyverman

(2010) - Genome Biology

DOI
617. The Ectocarpus genome and the independent evolution of multicellularity in brown algae

COCK, JM, STERCK, L, ROUZE, P, SCORNET, D, ALLEN, AE, AMOUTZIAS, G, ANTHOUARD, V, ARTIGUENAVE, F, AURY, JM, BADGER, JH, BESZTERI, B, BILLIAU, K, BONNET, E, BOTHWELL, JH, BOWLER, C, BOYEN, C, BROWNLEE, C, CARRANO, CJ, CHARRIER, B, CHO, GY, COELHO, SM, COLLEN, J, CORRE, E, DA SILVA, C, DELAGE, L, DELAROQUE, N, DITTAMI, SM, DOULBEAU, S, ELIAS, M, FARNHAM, G, GACHON, CMM, GSCHLOESSL, B, HEESCH, S, JABBARI, K, JUBIN, C, KAWAI, H, KIMURA, K, KLOAREG, B, KUPPER, FC, LANG, D, LE BAIL, A, LEBLANC, C, LEROUGE, P, LOHR, M, LOPEZ, PJ, MARTENS, C, MAUMUS, F, MICHEL, G, MIRANDA-SAAVEDRA, D, MORALES, J, MOREAU, H, MOTOMURA, T, NAGASATO, C, NAPOLI, CA, NELSON, DR, NYVALL-COLLEN, P, PETERS, AF, POMMIER, C, POTIN, P, POULAIN, J, QUESNEVILLE, H, READ, B, RENSING, SA, RITTER, A, ROUSVOAL, S, SAMANTA, M, SAMSON, G, SCHROEDER, DC, SEGURENS, B, STRITTMATTER, M, TONON, T, TREGEAR, JW, VALENTIN, K, VON DASSOW, P, YAMAGISHI, T, VAN DE PEER, Y, WINCKER, P

(2010) - Nature

DOI
616. Characterizing regulatory path motifs in integrated networks using perturbational data

Anagha Joshi, Thomas Van Parys, Yves Peer, Tom Michoel

(2010) - Genome Biology

DOI
615. Single-Gene and Whole-Genome Duplications and the Evolution of Protein-Protein Interaction Networks

Amoutzias, G., Van de Peer, Y.

(2010) - Evolutionary Genomics and Systems Biology

DOI
614. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

Van Leene, Jelle, Hollunder, Jens, Eeckhout, Dominique, Persiau, Geert, Van De Slijke, Eveline, Stals, Hilde, Van Isterdael, Gert, Verkest, Aurine, Neirynck, Sandy, Buffel, Yelle, De Bodt, Stefanie, Maere, Steven, Laukens, Kris, Pharazyn, Anne, Ferreira, Paulo C. G., Eloy, Nubia, Renne, Charlotte, Meyer, Christian, Faure, Jean-Denis, Steinbrenner, Jens, Beynon, Jim, Larkin, John C., Van de Peer, Yves, Hilson, Pierre, Kuiper, Martin, De Veylder, Lieven, Van Onckelen, Harry, Inze, Dirk, Witters, Erwin, De Jaeger, Geert

(2010) - Molecular Systems Biology

DOI
613. Posttranslational regulation impacts the fate of duplicated genes

AMOUTZIAS, GD, HE, Y, GORDON, J, MOSSIALOS, D, OLIVER, SG, VAN DE PEER, Y

(2010) - Proceedings of the National Academy of Sciences of the United States of America

DOI
612. Angiosperm polyploids and their road to evolutionary success

Fawcett, J.A., van de Peer, Y.

(2010) - Trends in Evolutionary Biology

DOI
611. Using Non-Reversible Context-Dependent Evolutionary Models to Study Substitution Patterns in Primate Non-Coding Sequences

Baele, Guy, Van de Peer, Yves, Vansteelandt, Stijn

(2010) - Journal of Molecular Evolution

DOI
610. The Potential for pathogenicity was present in the ancestor of the Ascomycete subphylum Pezizomycotina

Sanchez-Rodriguez, Aminael, Martens, Cindy, Engelen, Kristof, Van de Peer, Yves, Marchal, Kathleen

(2010) - Bmc Evolutionary Biology

DOI
609. The hidden duplication past of the plant pathogen Phytophthora and its consequences for infection

Martens, Cindy, Van de Peer, Yves

(2010) - Bmc Genomics

DOI
608. The genome of the domesticated apple (Malus x domestica Borkh.)

Velasco, Riccardo, Zharkikh, Andrey, Affourtit, Jason, Dhingra, Amit, Cestaro, Alessandro, Kalyanaraman, Ananth, Fontana, Paolo, Bhatnagar, Satish K., Troggio, Michela, Pruss, Dmitry, Salvi, Silvio, Pindo, Massimo, Baldi, Paolo, Castelletti, Sara, Cavaiuolo, Marina, Coppola, Giuseppina, Costa, Fabrizio, Cova, Valentina, Dal Ri, Antonio, Goremykin, Vadim, Komjanc, Matteo, Longhi, Sara, Magnago, Pierluigi, Malacarne, Giulia, Malnoy, Mickael, Micheletti, Diego, Moretto, Marco, Perazzolli, Michele, Si-Ammour, Azeddine, Vezzulli, Silvia, Zini, Elena, Eldredge, Glenn, Fitzgerald, Lisa M., Gutin, Natalia, Lanchbury, Jerry, Macalma, Teresita, Mitchell, Jeff T., Reid, Julia, Wardell, Bryan, Kodira, Chinnappa, Chen, Zhoutao, Desany, Brian, Niazi, Faheem, Palmer, Melinda, Koepke, Tyson, Jiwan, Derick, Schaeffer, Scott, Krishnan, Vandhana, Wu, Changjun, Chu, Vu T., King, Stephen T., Vick, Jessica, Tao, Quanzhou, Mraz, Amy, Stormo, Aimee, Stormo, Keith, Bogden, Robert, Ederle, Davide, Stella, Alessandra, Vecchietti, Alberto, Kater, Martin M., Masiero, Simona, Lasserre, Pauline, Lespinasse, Yves, Allan, Andrew C., Bus, Vincent, Chagne, David, Crowhurst, Ross N., Gleave, Andrew P., Lavezzo, Enrico, Fawcett, Jeffrey A., Proost, Sebastian, Rouze, Pierre, Sterck, Lieven, Toppo, Stefano, Lazzari, Barbara, Hellens, Roger P., Durel, Charles-Eric, Gutin, Alexander, Bumgarner, Roger E., Gardiner, Susan E., Skolnick, Mark, Egholm, Michael, Van de Peer, Yves, Salamini, Francesco, Viola, Roberto

(2010) - Nature Genetics

DOI
607. Robust biomarker identification for cancer diagnosis with ensemble feature selection methods

ABEEL, T, HELLEPUTTE, T, VAN DE PEER, Y, DUPONT, P, SAEYS, Y

(2010) - Bioinformatics

DOI
606. Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data

Bonnet, Eric, Michoel, Tom, Van de Peer, Yves

(2010) - Bioinformatics

DOI
605. Discriminative and informative features for biomolecular text mining with ensemble feature selection

Van Landeghem, Sofie, Abeel, Thomas, Saeys, Yvan, Van de Peer, Yves

(2010) - Bioinformatics

DOI
604. Modelling the ancestral sequence distribution and model frequencies in context-dependent models for primate non-coding sequences

Baele, Guy, Van de Peer, Yves, Vansteelandt, Stijn

(2010) - Bmc Evolutionary Biology

DOI
603. Highlights of the BioTM 2010 workshop on advances in bio text mining

Abeel, Thomas, Van Landeghem, Sofie, Morante, Roser, Van Asch, Vincent, Van de Peer, Yves, Daelemans, Walter, Saeys, Yvan

(2010) - Bmc Bioinformatics

DOI
602. Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling.

Huysman MJ, Martens C, Vandepoele K, Gillard J, Rayko E, Heijde M, Bowler C, Inzé D, Van de Peer Y, De Veylder L, Vyverman W

(2010) -

DOI
601. Opinion on the possible role of flavonoids as energy escape valves: novel tools for nature's Swiss army knife?

Hernández I, Van Breusegem F

(2010) - Plant Science

DOI
600. 2R or not 2R is not the question anymore

Van de Peer, Yves, Maere, Steven, Meyer, Axel

(2010) - Nature Reviews Genetics

DOI
599. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

Van Leene, Jelle, Hollunder, Jens, Eeckhout, Dominique, Persiau, Geert, Van De Slijke, Eveline, Stals, Hilde, Van Isterdael, Gert, Verkest, Aurine, Neirynck, Sandy, Buffel, Yelle, De Bodt, Stefanie, Maere, Steven, Laukens, Kris, Pharazyn, Anne, Ferreira, Paulo C. G., Eloy, Nubia, Renne, Charlotte, Meyer, Christian, Faure, Jean-Denis, Steinbrenner, Jens, Beynon, Jim, Larkin, John C., Van de Peer, Yves, Hilson, Pierre, Kuiper, Martin, De Veylder, Lieven, Van Onckelen, Harry, Inze, Dirk, Witters, Erwin, De Jaeger, Geert

(2010) - Molecular Systems Biology

DOI
598. The roots of a new green revolution

Den Herder, G., Van Isterdael, G., Beeckman, T., De Smet, I.

(2010) - Trends in Plant Science

DOI
597. Embryogenesis - the humble beginnings of plant life

De Smet, I., Lau, S., Mayer, U., Jurgens, G.

(2010) - Plant Journal

DOI
596. ABA promotes quiescence of the quiescent centre and suppresses stem cell differentiation in the Arabidopsis primary root meristem

Zhang, H. M., Han, W., De Smet, I., Talboys, P., Loya, R., Hassan, A., Rong, H. L., Jurgens, G., Knox, J. P., Wang, M. H.

(2010) - Plant Journal

DOI
595. Bimodular auxin response controls organogenesis in Arabidopsis

De Smet, I., Lau, S., Voss, U., Vanneste, S., Benjamins, R., Rademacher, E. H., Schlereth, A., De Rybel, B., Vassileva, V., Grunewald, W., Naudts, M., Levesque, M. P., Ehrismann, J. S., Inze, D., Luschnig, C., Benfey, P. N., Weijers, D., Van Montagu, M. C. E., Bennett, M. J., Jurgens, G., Beeckman, T.

(2010) - Proceedings of the National Academy of Sciences of the United States of America

DOI
594. The past, present, and future of chemical biology in auxin research.

De Rybel B, Audenaert D, Beeckman T, Kepinski S

(2009/12) -

DOI
593. Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

Tom Michoel, Riet De Smet, Anagha Joshi, Yves Van de Peer, Kathleen Marchal

(2009/12) - BMC Systems Biology

DOI
592. Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes.

Boruc J, Mylle E, Duda M, De Clercq R, Rombauts S, Geelen D, Hilson P, Inzé D, Van Damme D, Russinova E

(2009/12) - Plant physiology

DOI
591. The Past, Present, and Future of Chemical Biology in Auxin Research

Bert De Rybel, Dominique Audenaert, Tom Beeckman, Stefan Kepinski

(2009/12) - ACS Chemical Biology

DOI
590. Gene silencing induced by hairpin or inverted repeated sense transgenes varies among promoters and cell types

Gordana Marjanac, Mansour Karimi, Mirande Naudts, Tom Beeckman, Anna Depicker, Sylvie De Buck

(2009/12) - New Phytologist

DOI
589. Control of cell proliferation, organ growth, and DNA damage response operate independently of dephosphorylation of the Arabidopsis Cdk1 homolog CDKA;1.

Dissmeyer N, Weimer AK, Pusch S, De Schutter K, Alvim Kamei CL, Nowack MK, Novak B, Duan GL, Zhu YG, De Veylder L, Schnittger A

(2009/11) -

DOI
588. Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield.

Hauben M, Haesendonckx B, Standaert E, Van Der Kelen K, Azmi A, Akpo H, Van Breusegem F, Guisez Y, Bots M, Lambert B, Laga B, De Block M

(2009/11) -

DOI
587. Joint GC–MS and LC–MS platforms for comprehensive plant metabolomics: Repeatability and sample pre-treatment

Ruben t’Kindt, Kris Morreel, Dieter Deforce, Wout Boerjan, Jan Van Bocxlaer

(2009/11) - Journal of Chromatography B

DOI
586. (Homo)glutathione depletion modulates host gene expression during the symbiotic interaction between Medicago truncatula and Sinorhizobium meliloti.

Pucciariello C, Innocenti G, Van de Velde W, Lambert A, Hopkins J, Clément M, Ponchet M, Pauly N, Goormachtig S, Holsters M, Puppo A, Frendo P

(2009/11) -

DOI
585. Control of cell proliferation, organ growth, and DNA damage response operate independently of dephosphorylation of the Arabidopsis Cdk1 homolog CDKA;1.

Dissmeyer N, Weimer AK, Pusch S, De Schutter K, Alvim Kamei CL, Nowack MK, Novak B, Duan GL, Zhu YG, De Veylder L, Schnittger A

(2009/11) -

DOI
584. Developmental stage specificity and the role of mitochondrial metabolism in the response of Arabidopsis leaves to prolonged mild osmotic stress.

Skirycz A, De Bodt S, Obata T, De Clercq I, Claeys H, De Rycke R, Andriankaja M, Van Aken O, Van Breusegem F, Fernie AR, Inzé D

(2009/11) - Plant Physiology

DOI
583. Transcriptional control of the cell cycle.

Berckmans B, De Veylder L

(2009/10) -

DOI
582. Division plane determination during plant somatic cytokinesis.

Van Damme D

(2009/10) - Current opinion in plant biology

DOI
581. Receptor-like kinases shape the plant

Ive De Smet, Ute Voß, Gerd Jürgens, Tom Beeckman

(2009/10) - Nature Cell Biology

DOI
580. Manipulation of auxin transport in plant roots during Rhizobium symbiosis and nematode parasitism.

Grunewald W, van Noorden G, Van Isterdael G, Beeckman T, Gheysen G, Mathesius U

(2009/09) - The Plant Cell

DOI
579. Systematic analysis of cell-cycle gene expression during Arabidopsis development.

de Almeida Engler J, De Veylder L, De Groodt R, Rombauts S, Boudolf V, De Meyer B, Hemerly A, Ferreira P, Beeckman T, Karimi M, Hilson P, Inzé D, Engler G

(2009/08) -

DOI
578. Expression of the Arabidopsis jasmonate signalling repressor JAZ1/TIFY10A is stimulated by auxin

Wim Grunewald, Bartel Vanholme, Laurens Pauwels, Eva Plovie, Dirk Inzé, Godelieve Gheysen, Alain Goossens

(2009/08) - EMBO reports

DOI
577. Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins from Arabidopsis thaliana

MATTHEW RAMON, IVE DE SMET, LIES VANDESTEENE, MIRANDE NAUDTS, BARBARA LEYMAN, PATRICK VAN DIJCK, FILIP ROLLAND, TOM BEECKMAN, JOHAN M. THEVELEIN

(2009/08) - Plant, Cell & Environment

DOI
576. Arabidopsis lateral root development: an emerging story.

Péret B, De Rybel B, Casimiro I, Benková E, Swarup R, Laplaze L, Beeckman T, Bennett MJ

(2009/07) -

DOI
575. CDKB1;1 forms a functional complex with CYCA2;3 to suppress endocycle onset.

Boudolf V, Lammens T, Boruc J, Van Leene J, Van Den Daele H, Maes S, Van Isterdael G, Russinova E, Kondorosi E, Witters E, De Jaeger G, Inzé D, De Veylder L

(2009/07) -

DOI
574. APC/C-CCS52A complexes control meristem maintenance in the Arabidopsis root.

Vanstraelen M, Baloban M, Da Ines O, Cultrone A, Lammens T, Boudolf V, Brown SC, De Veylder L, Mergaert P, Kondorosi E

(2009/07) -

DOI
573. Arabidopsis lateral root development: an emerging story

Benjamin Péret, Bert De Rybel, Ilda Casimiro, Eva Benková, Ranjan Swarup, Laurent Laplaze, Tom Beeckman, Malcolm J. Bennett

(2009/07) - Trends in Plant Science

DOI
572. Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling.

De Rybel B, Audenaert D, Vert G, Rozhon W, Mayerhofer J, Peelman F, Coutuer S, Denayer T, Jansen L, Nguyen L, Vanhoutte I, Beemster GT, Vleminckx K, Jonak C, Chory J, Inzé D, Russinova E, Beeckman T

(2009/06) -

DOI
571. Genome sequence of the recombinant protein production host Pichia pastoris

Kristof De Schutter, Yao-Cheng Lin, Petra Tiels, Annelies Van Hecke, Sascha Glinka, Jacqueline Weber-Lehmann, Pierre Rouzé, Yves Van de Peer, Nico Callewaert

(2009/06) - Nature Biotechnology

DOI
570. Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks.

Vandepoele K, Quimbaya M, Casneuf T, De Veylder L, Van de Peer Y

(2009/06) -

DOI
569. Strangled at birth? Forest biotech and the Convention on Biological Diversity

Steven H. Strauss, Huimin Tan, Wout Boerjan, Roger Sedjo

(2009/06) - Nature Biotechnology

DOI
568. Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling.

De Rybel B, Audenaert D, Vert G, Rozhon W, Mayerhofer J, Peelman F, Coutuer S, Denayer T, Jansen L, Nguyen L, Vanhoutte I, Beemster GT, Vleminckx K, Jonak C, Chory J, Inzé D, Russinova E, Beeckman T

(2009/06) - Chemistry & biology

DOI
567. Calcium spiking patterns and the role of the calcium/calmodulin-dependent kinase CCaMK in lateral root base nodulation of Sesbania rostrata.

Capoen W, Den Herder J, Sun J, Verplancke C, De Keyser A, De Rycke R, Goormachtig S, Oldroyd G, Holsters M

(2009/05) -

DOI
566. Systematic analysis of cell-cycle gene expression during Arabidopsis development.

de Almeida Engler J, De Veylder L, De Groodt R, Rombauts S, Boudolf V, De Meyer B, Hemerly A, Ferreira P, Beeckman T, Karimi M, Hilson P, Inzé D, Engler G

(2009/04) - The Plant journ

DOI
565. A Snapshot of the Emerging Tomato Genome Sequence

Lukas A. Mueller, René Klein Lankhorst, Steven D. Tanksley, James J. Giovannoni, Ruth White, Julia Vrebalov, Zhangjun Fei, Joyce van Eck, Robert Buels, Adri A. Mills, Naama Menda, Isaak Y. Tecle, Aureliano Bombarely, Stephen Stack, Suzanne M. Royer, Song‐Bin Chang, Lindsay A. Shearer, Byung Dong Kim, Sung‐Hwan Jo, Cheol‐Goo Hur, Doil Choi, Chang‐Bao Li, Jiuhai Zhao, Hongling Jiang, Yu Geng, Yuanyuan Dai, Huajie Fan, Jinfeng Chen, Fei Lu, Jinfeng Shi, Shouhong Sun, Jianjun Chen, Xiaohua Yang, Chen Lu, Mingsheng Chen, Zhukuan Cheng, Chuanyou Li, Hongqing Ling, Yongbiao Xue, Ying Wang, Graham B. Seymour, Gerard J. Bishop, Glenn Bryan, Jane Rogers, Sarah Sims, Sarah Butcher, Daniel Buchan, James Abbott, Helen Beasley, Christine Nicholson, Clare Riddle

(2009/03) - The Plant Genome

DOI
564. Eternal youth, the fate of developing Arabidopsis leaves upon Rhodococcus fascians infection.

Depuydt S, De Veylder L, Holsters M, Vereecke D

(2009/03) -

DOI
563. Atypical E2Fs: new players in the E2F transcription factor family.

Lammens T, Li J, Leone G, De Veylder L

(2009/03) -

DOI
562. How relevant are flavonoids as antioxidants in plants?

Hernández I, Alegre L, Van Breusegem F, Munné-Bosch S

(2009/03) -

DOI
561. Cryopreservation of hairy root cultures of Maesa lanceolata and Medicago truncatula

E. Lambert, A. Goossens, B. Panis, M. C. Van Labeke, D. Geelen

(2009/03) - Plant Cell, Tissue and Organ Culture

DOI
560. DNA stress checkpoint control and plant development.

Cools T, De Veylder L

(2009/02) -

DOI
559. Integrative genetical genomics in Arabidopsis

Wout Boerjan, Marnik Vuylsteke

(2009/02) - Nature Genetics

DOI
558. Jasmonate-inducible gene: what does it mean?

Laurens Pauwels, Dirk Inzé, Alain Goossens

(2009/02) - Trends in Plant Science

DOI
557. Vacuolar transport of nicotine is mediated by a multidrug and toxic compound extrusion (MATE) transporter in Nicotiana tabacum

Masahiko Morita, Nobukazu Shitan, Keisuke Sawada, Marc C. E. Van Montagu, Dirk Inzé, Heiko Rischer, Alain Goossens, Kirsi-Marja Oksman-Caldentey, Yoshinori Moriyama, Kazufumi Yazaki

(2009/02) - Proceedings of the National Academy of Sciences

DOI
556. Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes.

Naouar N, Vandepoele K, Lammens T, Casneuf T, Zeller G, van Hummelen P, Weigel D, Rätsch G, Inzé D, Kuiper M, De Veylder L, Vuylsteke M

(2009/01) -

DOI
555. Genomic regions involved in productivity of two interspecific poplar families in Europe. 1. Stem height, circumference and volume

Dillen SY, Storme V, Marron N, Bastien C, Neyrinck S, Steenackers M, Ceulemans R, Boerjan W

(2009/01) - Tree Genetics & Genomes

DOI
554. Phylogenetic inference based on distance methods: Theory

Yves Van de Peer

(2009) - Phylogenetic Handbook: a Practical Approach to Phylogenetic Analysis and Hypothesis Testing

DOI
553. Unravelling cis-Regulatory Elements in the Genome of the Smallest Photosynthetic Eukaryote: Phylogenetic Footprinting in Ostreococcus

PIGANEAU, G, VANDEPOELE, K, GOURBIERE, S, VAN DE PEER, Y, MOREAU, H

(2009) - JOURNAL OF MOLECULAR EVOLUTION

DOI
552. Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks

VANDEPOELE, K, QUIMBAYA, M, CASNEUF, T, DE VEYLDER, L, VAN DE PEER, Y

(2009) - PLANT PHYSIOLOGY

DOI
551. Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development

VERMEIRSSEN, V, JOSHI, A, MICHOEL, T, BONNET, E, CASNEUF, T, VAN DE PEER, Y

(2009) - MOLECULAR BIOSYSTEMS

DOI
550. Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

WORDEN, AZ, LEE, JH, MOCK, T, ROUZE, P, SIMMONS, MP, AERTS, AL, ALLEN, AE, CUVELIER, ML, DERELLE, E, EVERETT, MV, FOULON, E, GRIMWOOD, J, GUNDLACH, H, HENRISSAT, B, NAPOLI, C, MCDONALD, SM, PARKER, MS, ROMBAUTS, S, SALAMOV, A, VON DASSOW, P, BADGER, JH, COUTINHO, PM, DEMIR, E, DUBCHAK, I, GENTEMANN, C, EIKREM, W, GREADY, JE, JOHN, U, LANIER, W, LINDQUIST, EA, LUCAS, S, MAYER, KFX, MOREAU, H, NOT, F, OTILLAR, R, PANAUD, O, PANGILINAN, J, PAULSEN, I, PIEGU, B, POLIAKOV, A, ROBBENS, S, SCHMUTZ, J, TOULZA, E, WYSS, T, ZELENSKY, A, ZHOU, K, ARMBRUST, EV, BHATTACHARYA, D, GOODENOUGH, UW, VAN DE PEER, Y, GRIGORIEV, IV

(2009) - SCIENCE

DOI
549. Java-ML: A machine learning library

Abeel, T., Van De Peer, Y., Saeys, Y.

(2009) - Journal of Machine Learning Research

No link available
548. Efficient context-dependent model building based on clustering posterior distributions for non-coding sequences

BAELE, G, VAN DE PEER, Y, VANSTEELANDT, S

(2009) - BMC EVOLUTIONARY BIOLOGY

DOI
547. The evolutionary significance of ancient genome duplications

Van De Peer, Y., Maere, S., Meyer, A.

(2009) - Nature Reviews Genetics

DOI
546. Toward a gold standard for promoter prediction evaluation

ABEEL, T, VAN DE PEER, Y, SAEYS, Y

(2009) - BIOINFORMATICS

DOI
545. Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression

DE BODT, S, PROOST, S, VANDEPOELE, K, ROUZE, P, VAN DE PEER, Y

(2009) - BMC GENOMICS

DOI
544. The flowering world: a tale of duplications

VAN DE PEER, Y, FAWCETT, JA, PROOST, S, STERCK, L, VANDEPOELE, K

(2009) - TRENDS IN PLANT SCIENCE

DOI
543. Reverse-Engineering Transcriptional Modules from Gene Expression Data

MICHOEL, T, DE SMET, R, JOSHI, A, MARCHAL, K, VAN DE PEER, Y

(2009) - CHALLENGES OF SYSTEMS BIOLOGY: COMMUNITY EFFORTS TO HARNESS BIOLOGICAL COMPLEXITY

DOI
542. Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

FAWCETT, JA, MAERE, S, VAN DE PEER, Y

(2009) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DOI
541. Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

DITTAMI, SM, SCORNET, D, PETIT, JL, SEGURENS, B, DA SILVA, C, CORRE, E, DONDRUP, M, GLATTING, KH, KONIG, R, STERCK, L, ROUZE, P, VAN DE PEER, Y, COCK, JM, BOYEN, C, TONON, T

(2009) - GENOME BIOLOGY

DOI
540. PLAZA: A Comparative Genomics Resource to Study Gene and Genome Evolution in Plants

PROOST, S, VAN BEL, M, STERCK, L, BILLIAU, K, VAN PARYS, T, VAN DE PEER, Y, VANDEPOELE, K

(2009) - Plant Cell

DOI
539. Module networks revisited: computational assessment and prioritization of model predictions

JOSHI, A, DE SMET, R, MARCHAL, K, VAN DE PEER, Y, MICHOEL, T

(2009) - BIOINFORMATICS

DOI
538. The Arabidopsis thaliana F-box protein FBL17 is essential for progression through the second mitosis during pollen development.

Gusti A, Baumberger N, Nowack M, Pusch S, Eisler H, Potuschak T, De Veylder L, Schnittger A, Genschik P

(2009) -

DOI
537. Translational control of eukaryotic gene expression.

Van Der Kelen K, Beyaert R, Inzé D, De Veylder L

(2009) -

DOI
536. Hydrogen Peroxide-Responsive Genes in Stress Acclimation and Cell Death

Sandy Vanderauwera, Frank A. Hoeberichts, Frank Van Breusegem

(2009) - Reactive Oxygen Species in Plant Signaling

DOI
535. OPINION The evolutionary significance of ancient genome duplications

Van de Peer, Yves, Maere, Steven, Meyer, Axel

(2009) - Nature Reviews Genetics

DOI
534. Open-ended On-board Evolutionary Robotics for Robot Swarms

Baele, Guy, Bredeche, Nicolas, Haasdijk, Evert, Maere, Steven, Michiels, Nico, Van de Peer, Yves, Schmickl, Thomas, Schwarzer, Christopher, Thenius, Ronald, IEEE

(2009) - 2009 Ieee Congress on Evolutionary Computation, Vols 1-5

DOI
533. Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

Fawcett, Jeffrey A., Maere, Steven, Van de Peer, Yves

(2009) - Proceedings of the National Academy of Sciences of the United States of America

DOI
532. The Arabidopsis thaliana F-box protein FBL17 is essential for progression through the second mitosis during pollen development.

Gusti A, Baumberger N, Nowack M, Pusch S, Eisler H, Potuschak T, De Veylder L, Schnittger A, Genschik P

(2009) -

DOI
531. Receptor-like kinases shape the plant

De Smet, I., Voss, U., Jurgens, G., Beeckman, T.

(2009) - Nature Cell Biology

DOI
530. Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins from Arabidopsis thaliana

Ramon, M., De Smet, I., Vandesteene, L., Naudts, M., Leyman, B., Van Dijck, P., Rolland, F., Beeckman, T., Thevelein, J. M.

(2009) - Plant Cell and Environment

DOI
529. Auxin signaling in algal lineages: fact or myth?

Lau, S., Shao, N., Bock, R., Jurgens, G., De Smet, I.

(2009) - Trends in Plant Science

DOI
528. Cryopreservation of hairy root cultures of Maesa lanceolata and Medicago truncatula.

Lambert E, Goossens A, Panis B, Van Labeke MC, Geelen D

(2009) - Plant Cell, Tissue and Organ Culture

No link available
527. A review of estimation of distribution algorithms in bioinformatics

Rubén Armañanzas, Iñaki Inza, Roberto Santana, Yvan Saeys, Jose Luis Flores, Jose Antonio Lozano, Yves Van de Peer, Rosa Blanco, Víctor Robles, Concha Bielza, Pedro Larrañaga

(2008/12) - BioData Mining

DOI
526. The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana.

Skirycz A, Radziejwoski A, Busch W, Hannah MA, Czeszejko J, Kwaśniewski M, Zanor MI, Lohmann JU, De Veylder L, Witt I, Mueller-Roeber B

(2008/12) -

DOI
525. Flowering-time genes modulate meristem determinacy and growth form in Arabidopsis thaliana

Siegbert Melzer, Frederic Lens, Jerôme Gennen, Steffen Vanneste, Antje Rohde, Tom Beeckman

(2008/12) - Nature Genetics

DOI
524. Physiological and transcriptomic evidence for a close coupling between chloroplast ontogeny and cell cycle progression in the pennate diatom Seminavis robusta.

Gillard J, Devos V, Huysman MJ, De Veylder L, D'Hondt S, Martens C, Vanormelingen P, Vannerum K, Sabbe K, Chepurnov VA, Inzé D, Vuylsteke M, Vyverman W

(2008/11) -

DOI
523. Functional Specialization of the TRANSPARENT TESTA GLABRA1 Network Allows Differential Hormonal Control of Laminal and Marginal Trichome Initiation in Arabidopsis Rosette Leaves

Lies Maes, Dirk Inzé, Alain Goossens

(2008/11) - Plant Physiology

DOI
522. Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.

De Smet I, Vassileva V, De Rybel B, Levesque MP, Grunewald W, Van Damme D, Van Noorden G, Naudts M, Van Isterdael G, De Clercq R, Wang JY, Meuli N, Vanneste S, Friml J, Hilson P, Jürgens G, Ingram GC, Inzé D, Benfey PN, Beeckman T

(2008/10) -

DOI
521. ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription.

Masuda HP, Cabral LM, De Veylder L, Tanurdzic M, de Almeida Engler J, Geelen D, Inzé D, Martienssen RA, Ferreira PC, Hemerly AS

(2008/10) -

DOI
520. Singlet oxygen is the major reactive oxygen species involved in photooxidative damage to plants.

Triantaphylidès C, Krischke M, Hoeberichts FA, Ksas B, Gresser G, Havaux M, Van Breusegem F, Mueller MJ

(2008/10) -

DOI
519. Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root.

De Smet I, Vassileva V, De Rybel B, Levesque MP, Grunewald W, Van Damme D, Van Noorden G, Naudts M, Van Isterdael G, De Clercq R, Wang JY, Meuli N, Beeckman T

(2008/10) - Science (New York, N.Y.)

DOI
518. Fine-tuning of early events in the jasmonate response

Laurens Pauwels, Alain Goossens

(2008/10) - Plant Signaling & Behavior

DOI
517. Fine-tuning of early events in the jasmonate response.

Pauwels L, Goossens A

(2008/10) -

No link available
516. Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

Ive De Smet, Valya Vassileva, Bert De Rybel, Mitchell P. Levesque, Wim Grunewald, Daniël Van Damme, Giel Van Noorden, Mirande Naudts, Gert Van Isterdael, Rebecca De Clercq, Jean Y. Wang, Nicholas Meuli, Steffen Vanneste, Jiří Friml, Pierre Hilson, Gerd Jürgens, Gwyneth C. Ingram, Dirk Inzé, Philip N. Benfey, Tom Beeckman

(2008/10) - Science

DOI
515. Atypical E2F activity restrains APC/CCCS52A2 function obligatory for endocycle onset.

Lammens T, Boudolf V, Kheibarshekan L, Zalmas LP, Gaamouche T, Maes S, Vanstraelen M, Kondorosi E, La Thangue NB, Govaerts W, Inzé D, De Veylder L

(2008/09) -

DOI
514. Seven in absentia proteins affect plant growth and nodulation in Medicago truncatula.

Den Herder G, De Keyser A, De Rycke R, Rombauts S, Van de Velde W, Clemente MR, Verplancke C, Mergaert P, Kondorosi E, Holsters M, Goormachtig S

(2008/09) -

DOI
513. Morph-ratio variation, population size and female reproductive success in distylous Pulmonaria officinalis (Boraginaceae).

Brys R, Jacquemyn H, Beeckman T

(2008/09) - Journal of Evolutionary Biology

DOI
512. A Role for AtWRKY23 in Feeding Site Establishment of Plant-Parasitic Nematodes

Wim Grunewald, Mansour Karimi, Krzysztof Wieczorek, Elke Van de Cappelle, Elisabeth Wischnitzki, Florian Grundler, Dirk Inzé, Tom Beeckman, Godelieve Gheysen

(2008/09) - Plant Physiology

DOI
511. The PRA1 gene family in Arabidopsis.

Alvim Kamei CL, Boruc J, Vandepoele K, Van den Daele H, Maes S, Russinova E, Inzé D, De Veylder L

(2008/08) -

DOI
510. LC-MS metabolic profiling of Arabidopsis thaliana plant leaves and cell cultures: optimization of pre-LC-MS procedure parameters.

t'Kindt R, De Veylder L, Storme M, Deforce D, Van Bocxlaer J

(2008/08) -

DOI
509. Vesicle trafficking during somatic cytokinesis.

Van Damme D, Inzé D, Russinova E

(2008/08) - Plant physiology

DOI
508. The Molecular Cloning of Artemisinic Aldehyde Δ11(13) Reductase and Its Role in Glandular Trichome-dependent Biosynthesis of Artemisinin in Artemisia annua

Yansheng Zhang, Keat H. Teoh, Darwin W. Reed, Lies Maes, Alain Goossens, Douglas J.H. Olson, Andrew R.S. Ross, Patrick S. Covello

(2008/08) - Journal of Biological Chemistry

DOI
507. The auxin influx carrier LAX3 promotes lateral root emergence

Kamal Swarup, Eva Benková, Ranjan Swarup, Ilda Casimiro, Benjamin Péret, Yaodong Yang, Geraint Parry, Erik Nielsen, Ive De Smet, Steffen Vanneste, Mitch P. Levesque, David Carrier, Nicholas James, Vanessa Calvo, Karin Ljung, Eric Kramer, Rebecca Roberts, Neil Graham, Sylvestre Marillonnet, Kanu Patel, Jonathan D.G. Jones, Christopher G. Taylor, Daniel P. Schachtman, Sean May, Goran Sandberg, Philip Benfey, Jiri Friml, Ian Kerr, Tom Beeckman, Laurent Laplaze, Malcolm J. Bennett

(2008/08) - Nature Cell Biology

DOI
506. The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1.

Takahashi N, Lammens T, Boudolf V, Maes S, Yoshizumi T, De Jaeger G, Witters E, Inzé D, De Veylder L

(2008/07) -

DOI
505. Unraveling the tapestry of networks involving reactive oxygen species in plants.

Van Breusegem F, Bailey-Serres J, Mittler R

(2008/07) -

DOI
504. Two microtubule-associated proteins of Arabidopsis MAP65s promote antiparallel microtubule bundling.

Gaillard J, Neumann E, Van Damme D, Stoppin-Mellet V, Ebel C, Barbier E, Geelen D, Vantard M

(2008/07) - Molecular biology of the cell

DOI
503. The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability.

Dohmann EM, Levesque MP, De Veylder L, Reichardt I, Jürgens G, Schmid M, Schwechheimer C

(2008/06) -

DOI
502. Mitochondrial respiratory pathways modulate nitrate sensing and nitrogen-dependent regulation of plant architecture in Nicotiana sylvestris.

Pellny TK, Van Aken O, Dutilleul C, Wolff T, Groten K, Bor M, De Paepe R, Reyss A, Van Breusegem F, Noctor G, Foyer CH

(2008/06) -

DOI
501. Lignin engineering

R VANHOLME, K MORREEL, J RALPH, W BOERJAN

(2008/06) - Current Opinion in Plant Biology

DOI
500. Natural variation in the degree of autonomous endosperm formation reveals independence and constraints of embryo growth during seed development in Arabidopsis thaliana.

Ungru A, Nowack MK, Reymond M, Shirzadi R, Kumar M, Biewers S, Grini PE, Schnittger A

(2008/06) -

DOI
499. Pollen deposition rates and the functioning of distyly in the perennial Pulmonaria officinalis (Boraginaceae)

Rein Brys, Hans Jacquemyn, Martin Hermy, Tom Beeckman

(2008/06) - Plant Systematics and Evolution

DOI
498. Choose your partners: dimerization in eukaryotic transcription factors

Grigoris D. Amoutzias, David L. Robertson, Yves Van de Peer, Stephen G. Oliver

(2008/05) - Trends in Biochemical Sciences

DOI
497. Structure of the genetic diversity in black poplar (Populus nigra L.) populations across European river systems: Consequences for conservation and restoration

M.J.M. Smulders, J.E. Cottrell, F. Lefèvre, J. van der Schoot, P. Arens, B. Vosman, H.E. Tabbener, F. Grassi, T. Fossati, S. Castiglione, V. Krystufek, S. Fluch, K. Burg, B. Vornam, A. Pohl, K. Gebhardt, N. Alba, D. Agúndez, C. Maestro, E. Notivol, R. Volosyanchuk, M. Pospíšková, S. Bordács, J. Bovenschen, B.C. van Dam, H.P. Koelewijn, D. Halfmaerten, B. Ivens, J. van Slycken, A. Vanden Broeck, V. Storme, W. Boerjan

(2008/04) - Forest Ecology and Management

DOI
496. Genome-wide identification of NBS resistance genes in Populus trichocarpa

Annegret Kohler, Cécile Rinaldi, Sébastien Duplessis, Marie Baucher, Danny Geelen, Frédéric Duchaussoy, Blake C. Meyers, Wout Boerjan, Francis Martin

(2008/04) - Plant Molecular Biology

DOI
495. Hydrogen peroxide-induced gene expression across kingdoms: a comparative analysis.

Vandenbroucke K, Robbens S, Vandepoele K, Inzé D, Van de Peer Y, Van Breusegem F

(2008/03) -

DOI
494. A Temperature-sensitive mutation in the Arabidopsis thaliana phosphomannomutase gene disrupts protein glycosylation and triggers cell death.

Hoeberichts FA, Vaeck E, Kiddle G, Coppens E, van de Cotte B, Adamantidis A, Ormenese S, Foyer CH, Zabeau M, Inzé D, Périlleux C, Van Breusegem F, Vuylsteke M

(2008/02) -

DOI
493. Hydrogen Peroxide-Induced Gene Expression across Kingdoms: A Comparative Analysis

K. Vandenbroucke, S. Robbens, K. Vandepoele, D. Inze, Y. Van de Peer, F. Van Breusegem

(2008/01) - Molecular Biology and Evolution

DOI
492. Novel Insights into Evolution of Protistan Polyketide Synthases through Phylogenomic Analysis

Uwe John, Bánk Beszteri, Evelyne Derelle, Yves Van de Peer, Betsy Read, Hervé Moreau, Allan Cembella

(2008/01) - Protist

DOI
491. The FTO Gene, Implicated in Human Obesity, Is Found Only in Vertebrates and Marine Algae

Steven Robbens, Pierre Rouzé, J. Mark Cock, Jürg Spring, Alexandra Z. Worden, Yves Van de Peer

(2008/01) - Journal of Molecular Evolution

DOI
490. Identification of the structure and origin of a thioacidolysis marker compound for ferulic acid incorporation into angiosperm lignins (and an indicator for cinnamoyl CoA reductase deficiency)

John Ralph, Hoon Kim, Fachuang Lu, John H. Grabber, Jean‐Charles Leplé, Jimmy Berrio‐Sierra, Mohammad Mir Derikvand, Lise Jouanin, Wout Boerjan, Catherine Lapierre

(2008/01) - The Plant Journal

DOI
489. Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells

Laurens Pauwels, Kris Morreel, Emilie De Witte, Freya Lammertyn, Marc Van Montagu, Wout Boerjan, Dirk Inzé, Alain Goossens

(2008/01) - Proceedings of the National Academy of Sciences

DOI
488. Mapping methyl jasmonate-mediated transcriptional reprogramming of metabolism and cell cycle progression in cultured Arabidopsis cells

Laurens Pauwels, Kris Morreel, Emilie De Witte, Freya Lammertyn, Marc Van Montagu, Wout Boerjan, Dirk Inzé, Alain Goossens

(2008/01) - Proceedings of the National Academy of Sciences

DOI
487. Diarch Symmetry of the Vascular Bundle in Arabidopsis Root Encompasses the Pericycle and Is Reflected in Distich Lateral Root Initiation

Boris Parizot, Laurent Laplaze, Lilian Ricaud, Elodie Boucheron-Dubuisson, Vincent Bayle, Martin Bonke, Ive De Smet, Scott R. Poethig, Yka Helariutta, Jim Haseloff, Dominique Chriqui, Tom Beeckman, Laurent Nussaume

(2008/01) - Plant Physiology

DOI
486. Cytokinins Act Directly on Lateral Root Founder Cells to Inhibit Root Initiation

Laurent Laplaze, Eva Benkova, Ilda Casimiro, Lies Maes, Steffen Vanneste, Ranjan Swarup, Dolf Weijers, Vanessa Calvo, Boris Parizot, Maria Begoña Herrera-Rodriguez, Remko Offringa, Neil Graham, Patrick Doumas, Jiri Friml, Didier Bogusz, Tom Beeckman, Malcolm Bennett

(2008/01) - The Plant Cell

DOI
485. The Phaeodactylum genome reveals the evolutionary history of diatom genomes

BOWLER, C, ALLEN, AE, BADGER, JH, GRIMWOOD, J, JABBARI, K, KUO, A, MAHESWARI, U, MARTENS, C, MAUMUS, F, OTILLAR, RP, RAYKO, E, SALAMOV, A, VANDEPOELE, K, BESZTERI, B, GRUBER, A, HEIJDE, M, KATINKA, M, MOCK, T, VALENTIN, K, VERRET, F, BERGES, JA, BROWNLEE, C, CADORET, JP, CHIOVITTI, A, CHOI, CJ, COESEL, S, DE MARTINO, A, DETTER, JC, DURKIN, C, FALCIATORE, A, FOURNET, J, HARUTA, M, HUYSMAN, MJJ, JENKINS, BD, JIROUTOVA, K, JORGENSEN, RE, JOUBERT, Y, KAPLAN, A, KROGER, N, KROTH, PG, LA ROCHE, J, LINDQUIST, E, LOMMER, M, MARTIN-JEZEQUEL, V, LOPEZ, PJ, LUCAS, S, MANGOGNA, M, MCGINNIS, K, MEDLIN, LK, MONTSANT, A, OUDOT-LE SECQ, MP, NAPOLI, C, OBORNIK, M, PARKER, MS, PETIT, JL, PORCEL, BM, POULSEN, N, ROBISON, M, RYCHLEWSKI, L, RYNEARSON, TA, SCHMUTZ, J, SHAPIRO, H, SIAUT, M, STANLEY, M, SUSSMAN, MR, TAYLOR, AR, VARDI, A, VON DASSOW, P, VYVERMAN, W, WILLIS, A, WYRWICZ, LS, ROKHSAR, DS, WEISSENBACH, J, ARMBRUST, EV, GREEN, BR, VAN DE PEER, Y, GRIGORIEV, IV

(2008) - NATURE

DOI
484. Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species

MARTENS, C, VANDEPOELE, K, VAN DE PEER, Y

(2008) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DOI
483. Generic eukaryotic core promoter prediction using structural features of DNA

ABEEL, T, SAEYS, Y, BONNET, E, ROUZE, P, VAN DE PEER, Y

(2008) - GENOME RESEARCH

DOI
482. Analysis of a Gibbs sampler method for model-based clustering of gene expression data

JOSHI, A, VAN DE PEER, Y, MICHOEL, T

(2008) - BIOINFORMATICS

DOI
481. A Model-Based Approach to Study Nearest-Neighbor Influences Reveals Complex Substitution Patterns in Non-coding Sequences

BAELE, G, VAN DE PEER, Y, VANSTEELANDT, S

(2008) - SYSTEMATIC BIOLOGY

DOI
480. MANTIS: a phylogenetic framework for multi-species genome comparisons

TZIKA, AC, HELAERS, R, VAN DE PEER, Y, MILINKOVITCH, MC

(2008) - BIOINFORMATICS

DOI
479. FunSiP: A modular and extensible classifier for the prediction of functional sites in DNA

Van Bel, M., Saeys, Y., Van de Peer, Y.

(2008) - Bioinformatics

DOI
478. Genome annotation in plants and fungi: EuGène as a model platform

Foissac, S., Gouzy, J., Rombauts, S., Mathé, C., Amselem, J., Sterck, L., Van De Peer, Y., Rouzé, P., Schiex, T.

(2008) - Current Bioinformatics

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477. Meta analysis of gene expression data within and across species

Fierro, A.C., Vandenbussche, F., Engelen, K., Van de Peer, Y., Marchal, K.

(2008) - Current Genomics

DOI
476. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

MARTIN, F, AERTS, A, AHREN, D, BRUN, A, DANCHIN, EGJ, DUCHAUSSOY, F, GIBON, J, KOHLER, A, LINDQUIST, E, PEREDA, V, SALAMOV, A, SHAPIRO, HJ, WUYTS, J, BLAUDEZ, D, BUEE, M, BROKSTEIN, P, CANBACK, B, COHEN, D, COURTY, PE, COUTINHO, PM, DELARUELLE, C, DETTER, JC, DEVEAU, A, DIFAZIO, S, DUPLESSIS, S, FRAISSINET-TACHET, L, LUCIC, E, FREY-KLETT, P, FOURREY, C, FEUSSNER, I, GAY, G, GRIMWOOD, J, HOEGGER, PJ, JAIN, P, KILARU, S, LABBE, J, LIN, YC, LEGUE, V, LE TACON, F, MARMEISSE, R, MELAYAH, D, MONTANINI, B, MURATET, M, NEHLS, U, NICULITA-HIRZEL, H, OUDOT-LE SECQ, MP, PETER, M, QUESNEVILLE, H, RAJASHEKAR, B, REICH, M, ROUHIER, N, SCHMUTZ, J, YIN, T, CHALOT, M, HENRISSAT, B, KUES, U, LUCAS, S, VAN DE PEER, Y, PODILA, GK, POLLE, A, PUKKILA, PJ, RICHARDSON, PM, ROUZE, P, SANDERS, IR, STAJICH, JE, TUNLID, A, TUSKAN, G, GRIGORIEV, IV

(2008) - NATURE

DOI
475. ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles

ABEEL, T, SAEYS, Y, ROUZE, P, VAN DE PEER, Y

(2008) - BIOINFORMATICS

DOI
474. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants

RENSING, SA, LANG, D, ZIMMER, AD, TERRY, A, SALAMOV, A, SHAPIRO, H, NISHIYAMA, T, PERROUD, PF, LINDQUIST, EA, KAMISUGI, Y, TANAHASHI, T, SAKAKIBARA, K, FUJITA, T, OISHI, K, SHIN-I, T, KUROKI, Y, TOYODA, A, SUZUKI, Y, HASHIMOTO, S, YAMAGUCHI, K, SUGANO, S, KOHARA, Y, FUJIYAMA, A, ANTEROLA, A, AOKI, S, ASHTON, N, BARBAZUK, WB, BARKER, E, BENNETZEN, JL, BLANKENSHIP, R, CHO, SH, DUTCHER, SK, ESTELLE, M, FAWCETT, JA, GUNDLACH, H, HANADA, K, HEYL, A, HICKS, KA, HUGHES, J, LOHR, M, MAYER, K, MELKOZERNOV, A, MURATA, T, NELSON, DR, PILS, B, PRIGGE, M, REISS, B, RENNER, T, ROMBAUTS, S, RUSHTON, PJ, SANDERFOOT, A, SCHWEEN, G, SHIU, SH, STUEBER, K, THEODOULOU, FL, TU, H, VAN DE PEER, Y, VERRIER, PJ, WATERS, E, WOOD, A, YANG, LX, COVE, D, CUMING, AC, HASEBE, M, LUCAS, S, MISHLER, BD, RESKI, R, GRIGORIEV, IV, QUATRANO, RS, BOORE, JL

(2008) - SCIENCE

DOI
473. i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles

SIMILLION, C, JANSSENS, K, STERCK, L, VAN DE PEER, Y

(2008) - BIOINFORMATICS

DOI
472. Evolution and taxonomic distribution of nonribosomal peptide and polyketide synthases

AMOUTZIAS, GD, VAN DE PEER, Y, MOSSIALOS, D

(2008) - FUTURE MICROBIOLOGY

DOI
471. Together we stand: Genes cluster to coordinate regulation

AMOUTZIAS, G, VAN DE PEER, Y

(2008) - DEVELOPMENTAL CELL

DOI
470. Extracting expression modules from perturbational gene expression compendia

Maere, Steven, Van Dijck, Patrick, Kuiper, Martin

(2008) - Bmc Systems Biology

DOI
469. The evolving complexity of the auxin pathway

Lau, S., Jurgens, G., De Smet, I.

(2008) - Plant Cell

DOI
468. The auxin influx carrier LAX3 promotes lateral root emergence

Swarup, K., Benkova, E., Swarup, R., Casimiro, I., Peret, B., Yang, Y., Parry, G., Nielsen, E., De Smet, I., Vanneste, S., Levesque, M. P., Carrier, D., James, N., Calvo, V., Ljung, K., Kramer, E., Roberts, R., Graham, N., Marillonnet, S., Patel, K., Jones, J. D. G., Taylor, C. G., Schachtman, D. P., May, S., Sandberg, G., Benfey, P., Friml, J., Kerr, I., Beeckman, T., Laplaze, L., Bennett, M. J.

(2008) - Nature Cell Biology

DOI
467. Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root

De Smet, I., Vassileva, V., De Rybel, B., Levesque, M. P., Grunewald, W., Van Damme, D., Van Noorden, G., Naudts, M., Van Isterdael, G., De Clercq, R., Wang, J. Y., Meuli, N., Vanneste, S., Friml, J., Hilson, P., Jurgens, G., Ingram, G. C., Inze, D., Benfey, P. N., Beeckman, T.

(2008) - Science

DOI
466. Diarch symmetry of the vascular bundle in Arabidopsis root encompasses the pericycle and is reflected in distich lateral root initiation

Parizot, B., Laplaze, L., Ricaud, L., Boucheron-Dubuisson, E., Bayle, V., Bonke, M., De Smet, I., Poethig, S. R., Helariutta, Y., Haseloff, J., Chriqui, D., Beeckman, T., Nussaume, L.

(2008) - Plant Physiology

DOI
465. Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development.

Van Aken O, Pecenková T, van de Cotte B, De Rycke R, Eeckhout D, Fromm H, De Jaeger G, Witters E, Beemster GT, Inzé D, Van Breusegem F

(2007/12) -

DOI
464. Downregulation of Cinnamoyl-Coenzyme A Reductase in Poplar: Multiple-Level Phenotyping Reveals Effects on Cell Wall Polymer Metabolism and Structure

Jean-Charles Leplé, Rebecca Dauwe, Kris Morreel, Véronique Storme, Catherine Lapierre, Brigitte Pollet, Annette Naumann, Kyu-Young Kang, Hoon Kim, Katia Ruel, Andrée Lefèbvre, Jean-Paul Joseleau, Jacqueline Grima-Pettenati, Riet De Rycke, Sara Andersson-Gunnerås, Alexander Erban, Ines Fehrle, Michel Petit-Conil, Joachim Kopka, Andrea Polle, Eric Messens, Björn Sundberg, Shawn D. Mansfield, John Ralph, Gilles Pilate, Wout Boerjan

(2007/12) - The Plant Cell

DOI
463. Gene expression during the induction, maintenance, and release of dormancy in apical buds of poplar

Antje Rohde, Tom Ruttink, Vanessa Hostyn, Lieven Sterck, Klara Van Driessche, Wout Boerjan

(2007/12) - Journal of Experimental Botany

DOI
462. Conditional oxidative stress responses in the Arabidopsis photorespiratory mutant cat2 demonstrate that redox state is a key modulator of daylength-dependent gene expression, and define photoperiod as a crucial factor in the regulation of H2O2-induced cell death.

Queval G, Issakidis-Bourguet E, Hoeberichts FA, Vandorpe M, Gakière B, Vanacker H, Miginiac-Maslow M, Van Breusegem F, Noctor G

(2007/11) -

DOI
461. Are metacaspases caspases?

Vercammen D, Declercq W, Vandenabeele P, Van Breusegem F

(2007/11) -

DOI
460. Demarcation of the cortical division zone in dividing plant cells.

Van Damme D, Geelen D

(2007/11) - Cell biology international

DOI
459. Determination of saponins in Maesa lanceolata by LC-UV: Development and validation

Mart H.B.L. Theunis, Kenn Foubert, Jacob Pollier, Miguel Gonzalez-Guzman, Alain Goossens, Arnold J. Vlietinck, Luc A.C. Pieters, Sandra Apers

(2007/11) - Phytochemistry

DOI
458. Functional characterisation of genes involved in pyridine alkaloid biosynthesis in tobacco

Suvi T. Häkkinen, Sofie Tilleman, Agnieszka Šwiątek, Valerie De Sutter, Heiko Rischer, Isabelle Vanhoutte, Harry Van Onckelen, Pierre Hilson, Dirk Inzé, Kirsi-Marja Oksman-Caldentey

(2007/11) - Phytochemistry

DOI
457. A Molecular Timetable for Apical Bud Formation and Dormancy Induction in Poplar

Tom Ruttink, Matthias Arend, Kris Morreel, Véronique Storme, Stephane Rombauts, Jörg Fromm, Rishikesh P. Bhalerao, Wout Boerjan, Antje Rohde

(2007/10) - The Plant Cell

DOI
456. Molecular phenotyping of lignin‐modified tobacco reveals associated changes in cell‐wall metabolism, primary metabolism, stress metabolism and photorespiration

Rebecca Dauwe, Kris Morreel, Geert Goeminne, Birgit Gielen, Antje Rohde, Jos Van Beeumen, John Ralph, Alain‐Michel Boudet, Joachim Kopka, Soizic F. Rochange, Claire Halpin, Eric Messens, Wout Boerjan

(2007/10) - The Plant Journal

DOI
455. Impact of Core Histone Modifications on Transcriptional Regulation and Plant Growth

Hilde Nelissen, Tommaso Matteo Boccardi, Kristiina Himanen, Mieke Van Lijsebettens

(2007/10) - Critical Reviews in Plant Sciences

DOI
454. Silencing of poly(ADP-ribose) polymerase in plants alters abiotic stress signal transduction.

Vanderauwera S, De Block M, Van de Steene N, van de Cotte B, Metzlaff M, Van Breusegem F

(2007/09) -

DOI
453. Lignins

John Ralph, Gösta Brunow, Wout Boerjan

(2007/09) - Encyclopedia of Life Sciences

DOI
452. The ins and outs of the plant cell cycle.

De Veylder L, Beeckman T, Inzé D

(2007/08) -

DOI
451. Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses.

Peres A, Churchman ML, Hariharan S, Himanen K, Verkest A, Vandepoele K, Magyar Z, Hatzfeld Y, Van Der Schueren E, Beemster GT, Frankard V, Larkin JC, Inzé D, De Veylder L

(2007/08) -

DOI
450. Resistance to Botrytis cinerea in sitiens, an abscisic acid-deficient tomato mutant, involves timely production of hydrogen peroxide and cell wall modifications in the epidermis.

Asselbergh B, Curvers K, Franca SC, Audenaert K, Vuylsteke M, Van Breusegem F, Höfte M

(2007/08) -

DOI
449. Comparative transcriptome analysis reveals common and specific tags for root hair and crack-entry invasion in Sesbania rostrata.

Capoen W, Den Herder J, Rombauts S, De Gussem J, De Keyser A, Holsters M, Goormachtig S

(2007/08) -

DOI
448. Cortical division zone establishment in plant cells.

Van Damme D, Vanstraelen M, Geelen D

(2007/08) - Trends in plant science

DOI
447. Cytological investigations of the Arabidopsis thaliana elo1 mutant give new insights into leaf lateral growth and Elongator function.

Falcone A, Nelissen H, Fleury D, Van Lijsebettens M, Bitonti MB

(2007/08) -

DOI
446. Ethylene Regulates Root Growth through Effects on Auxin Biosynthesis and Transport-Dependent Auxin Distribution

Kamil Růžička, Karin Ljung, Steffen Vanneste, Radka Podhorská, Tom Beeckman, Jiří Friml, Eva Benková

(2007/08) - The Plant Cell

DOI
445. The ins and outs of the plant cell cycle

Lieven De Veylder, Tom Beeckman, Dirk Inzé

(2007/08) - Nature Reviews Molecular Cell Biology

DOI
444. A symbiotic plant peroxidase involved in bacterial invasion of the tropical legume Sesbania rostrata.

Den Herder J, Lievens S, Rombauts S, Holsters M, Goormachtig S

(2007/06) -

DOI
443. Classical anticytokinins do not interact with cytokinin receptors but inhibit cyclin-dependent kinases.

Spíchal L, Krystof V, Paprskárová M, Lenobel R, Styskala J, Binarová P, Cenklová V, De Veylder L, Inzé D, Kontopidis G, Fischer PM, Schmülling T, Strnad M

(2007/05) -

DOI
442. Bypassing genomic imprinting allows seed development.

Nowack MK, Shirzadi R, Dissmeyer N, Dolf A, Endl E, Grini PE, Schnittger A

(2007/05) -

DOI
441. T-loop phosphorylation of Arabidopsis CDKA;1 is required for its function and can be partially substituted by an aspartate residue.

Dissmeyer N, Nowack MK, Pusch S, Stals H, Inzé D, Grini PE, Schnittger A

(2007/03) -

DOI
440. Implementation of functional genomics for gene discovery in alkaloid producing plants

Alain Goossens, Heiko Rischer

(2007/03) - Phytochemistry Reviews

DOI
439. Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis.

De Smet I, Tetsumura T, De Rybel B, Frei dit Frey N, Laplaze L, Casimiro I, Swarup R, Naudts M, Vanneste S, Audenaert D, Inzé D, Bennett MJ, Beeckman T

(2007/02) -

DOI
438. Genetically modified lignin below ground

David W. Hopkins, Elizabeth A. Webster, Wout Boerjan, Gilles Pilate, Claire Halpin

(2007/02) - Nature Biotechnology

DOI
437. Nod factor perception during infection thread growth fine-tunes nodulation.

Den Herder J, Vanhee C, De Rycke R, Corich V, Holsters M, Goormachtig S

(2007/02) -

DOI
436. The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.

Fleury D, Himanen K, Cnops G, Nelissen H, Boccardi TM, Maere S, Beemster GT, Neyt P, Anami S, Robles P, Micol JL, Inzé D, Van Lijsebettens M

(2007/02) -

DOI
435. Auxin-dependent regulation of lateral root positioning in the basal meristem ofArabidopsis

Ive De Smet, Takuya Tetsumura, Bert De Rybel, Nicolas Frei dit Frey, Laurent Laplaze, Ilda Casimiro, Ranjan Swarup, Mirande Naudts, Steffen Vanneste, Dominique Audenaert, Dirk Inzé, Malcolm J. Bennett, Tom Beeckman

(2007/02) - Development

DOI
434. Arabidopsis WEE1 kinase controls cell cycle arrest in response to activation of the DNA integrity checkpoint.

De Schutter K, Joubès J, Cools T, Verkest A, Corellou F, Babiychuk E, Van Der Schueren E, Beeckman T, Kushnir S, Inzé D, De Veylder L

(2007/01) -

DOI
433. Metacaspase activity of Arabidopsis thaliana is regulated by S-nitrosylation of a critical cysteine residue.

Belenghi B, Romero-Puertas MC, Vercammen D, Brackenier A, Inzé D, Delledonne M, Van Breusegem F

(2007/01) -

DOI
432. Arabidopsis WEE1 kinase controls cell cycle arrest in response to activation of the DNA integrity checkpoint.

De Schutter K, Joubès J, Cools T, Verkest A, Corellou F, Babiychuk E, Van Der Schueren E, Beeckman T, Kushnir S, Inzé D, De Veylder L

(2007/01) - The Plant Cell

DOI
431. The future for plants and plants for the future

Yves Van de Peer

(2007) - Genome Biology

DOI
430. Validating module network learning algorithms using simulated data

Michoel, T., Maere, S., Bonnet, E., Joshi, A., Saeys, Y., Van den Bulcke, T., Van Leemput, K., Van Remortel, P., Kuiper, M., Marchal, K., Van de Peer, Y.

(2007) - BMC Bioinformatics

DOI
429. The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: Organelle genomes of the smallest eukaryote are examples of compaction

Robbens, S., Derelle, E., Ferraz, C., Wuyts, J., Moreau, H., Van De Peer, Y.

(2007) - Molecular Biology and Evolution

DOI
428. An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

Rensing, S.A., Ick, J., Fawcett, J.A., Lang, D., Zimmer, A., Van De Peer, Y., Reski, R.

(2007) - BMC Evolutionary Biology

DOI
427. Divergence of regulatory sequences in duplicated fish genes

Van Hellemont, R., Blomme, T., Van De Peer, Y., Marchal, K.

(2007) - Genome Dynamics

DOI
426. Translation initiation site prediction on a genomic scale: Beauty in simplicity

Saeys, Y., Abeel, T., Degroeve, S., Van de Peer, Y.

(2007) - Bioinformatics

DOI
425. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation

Palenik, B., Grimwood, J., Aerts, A., Rouzé, P., Salamov, A., Putnam, N., Dupont, C., Jorgensen, R., Derelle, E., Rombauts, S., Zhou, K., Otillar, R., Merchant, S.S., Podell, S., Gaasterland, T., Napoli, C., Gendler, K., Manuell, A., Tai, V., Vallon, O., Piganeau, G., Jancek, S., Heijde, M., Jabbari, K., Bowler, C., Lohr, M., Robbens, S., Werner, G., Dubchak, I., Pazour, G.J., Ren, Q., Paulsen, I., Delwiche, C., Schmutz, J., Rokhsar, D., Van De Peer, Y., Moreau, H., Grigoriev, I.V.

(2007) - Proceedings of the National Academy of Sciences of the United States of America

DOI
424. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

Carlton, J.M., Hirt, R.P., Silva, J.C., Delcher, A.L., Schatz, M., Zhao, Q., Wortman, J.R., Bidwell, S.L., Alsmark, U.C.M., Besteiro, S., Sicheritz-Ponten, T., Noel, C.J., Dacks, J.B., Foster, P.G., Simillion, C., Van De Peer, Y., Miranda-Saavedra, D., Barton, G.J., Westrop, G.D., Müller, S., Dessi, D., Fiori, P.L., Ren, Q., Paulsen, I., Zhang, H., Bastida-Corcuera, F.D., Simoes-Barbosa, A., Brown, M.T., Hayes, R.D., Mukherjee, M., Okumura, C.Y., Schneider, R., Smith, A.J., Vanacova, S., Villalvazo, M., Haas, B.J., Pertea, M., Feldblyum, T.V., Utterback, T.R., Shu, C.-L., Osoegawa, K., De Jong, P.J., Hrdy, I., Horvathova, L., Zubacova, Z., Dolezal, P., Malik, S.-B., Logsdon Jr., J.M., Henze, K., Gupta, A., Wang, C.C., Dunne, R.L., Upcroft, J.A., Upcroft, P., White, O., Salzberg, S.L., Tang, P., Chiu, C.-H., Lee, Y.-S., Embley, T.M., Coombs, G.H., Mottram, J.C., Tachezy, J., Fraser-Liggett, C.M., Johnson, P.J.

(2007) - Science

DOI
423. Unique regulation of the Calvin cycle in the ultrasmall green alga Ostreococcus

Robbens, S., Petersen, J., Brinkmann, H., Rouzé, P., Van De Peer, Y.

(2007) - Journal of Molecular Evolution

DOI
422. In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation

Casneuf, T., Van de Peer, Y., Huber, W.

(2007) - BMC Bioinformatics

DOI
421. In search of the small ones: Improved prediction of short exons in vertebrates, plants, fungi and protists

Saeys, Y., Rouzé, P., Van de Peer, Y.

(2007) - Bioinformatics

DOI
420. How many genes are there in plants (... and why are they there)?

Sterck, L., Rombauts, S., Vandepoele, K., Rouzé, P., Van de Peer, Y.

(2007) - Current Opinion in Plant Biology

DOI
419. Canalization without flux sensors: a traveling-wave hypothesis

MERKS, RMH, VAN DE PEER, Y, INZE, D, BEEMSTER, GTS

(2007) - TRENDS IN PLANT SCIENCE

DOI
418. A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety

VELASCO, R, ZHARKIKH, A, TROGGIO, M, CARTWRIGHT, DA, CESTARO, A, PRUSS, D, PINDO, M, FITZGERALD, LM, VEZZULLI, S, REID, J, MALACARNE, G, ILIEV, D, COPPOLA, G, WARDELL, B, MICHELETTI, D, MACALMA, T, FACCI, M, MITCHELL, JT, PERAZZOLLI, M, ELDREDGE, G, GATTO, P, OYZERSKI, R, MORETTO, M, GUTIN, N, STEFANINI, M, CHEN, Y, SEGALA, C, DAVENPORT, C, DEMATTE, L, MRAZ, A, BATTILANA, J, STORMO, K, COSTA, F, TAO, QZ, SI-AMMOUR, A, HARKINS, T, LACKEY, A, PERBOST, C, TAILLON, B, STELLA, A, SOLOVYEV, V, FAWCETT, JA, STERCK, L, VANDEPOELE, K, GRANDO, SM, TOPPO, S, MOSER, C, LANCHBURY, J, BOGDEN, R, SKOLNICK, M, SGARAMELLA, V, BHATNAGAR, SK, FONTANA, P, GUTIN, A, VAN DE PEER, Y, SALAMINI, F, VIOLA, R

(2007) - PLOS ONE

DOI
417. The Interplay Between Salicylic Acid and Reactive Oxygen Species During Cell Death in Plants

J. F. Dat, N. Capelli, F. Van Breusegem

(2007) - Salicylic Acid: A Plant Hormone

DOI
416. The interplay between salicylic acid and reactive oxygen species during cell death in plants

Dat, J.F., Capelli, N., Van Breusegem, F.

(2007) - Salicylic Acid: A Plant Hormone

DOI
415. Validating module network learning algorithms using simulated data

Michoel, Tom, Maere, Steven, Bonnet, Eric, Joshi, Anagha, Saeys, Yvan, Van den Bulcke, Tim, Van Leemput, Koenraad, van Remortel, Piet, Kuiper, Martin, Marchal, Kathleen, de Peer, Yves Van

(2007) - Bmc Bioinformatics

DOI
414. The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth

Fleury, Delphine, Himanen, Kristiina, Cnops, Gerda, Nelissen, Hilde, Boccardi, Tommaso Matteo, Maere, Steven, Beemster, Gerrit T. S., Neyt, Pia, Anami, Sylvester, Robles, Pedro, Micol, Jose Luis, Inze, Dirk, Van Lijsebettens, Mieke

(2007) - Plant Cell

DOI
413. Integration of biological networks and gene expression data using Cytoscape

Cline, Melissa S., Smoot, Michael, Cerami, Ethan, Kuchinsky, Allan, Landys, Nerius, Workman, Chris, Christmas, Rowan, Avila-Campilo, Iliana, Creech, Michael, Gross, Benjamin, Hanspers, Kristina, Isserlin, Ruth, Kelley, Ryan, Killcoyne, Sarah, Lotia, Samad, Maere, Steven, Morris, John, Ono, Keiichiro, Pavlovic, Vuk, Pico, Alexander R., Vailaya, Aditya, Wang, Peng-Liang, Adler, Annette, Conklin, Bruce R., Hood, Leroy, Kuiper, Martin, Sander, Chris, Schmulevich, Ilya, Schwikowski, Benno, Warner, Guy J., Ideker, Trey, Bader, Gary D.

(2007) - Nature Protocols

DOI
412. Auxin-dependent regulation of lateral root positioning in the basal meristem of Arabidopsis

De Smet, I., Tetsumura, T., De Rybel, B., Frey, N. F. D., Laplaze, L., Casimiro, I., Swarup, R., Naudts, M., Vanneste, S., Audenaert, D., Inze, D., Bennett, M. J., Beeckman, T.

(2007) - Development

DOI
411. Patterning the axis in plants-auxin in control

De Smet, I., Jurgens, G.

(2007) - Current Opinion in Genetics & Development

DOI
410. Serpin1 of Arabidopsis thaliana is a suicide inhibitor for metacaspase 9.

Vercammen D, Belenghi B, van de Cotte B, Beunens T, Gavigan JA, De Rycke R, Brackenier A, Inzé D, Harris JL, Van Breusegem F

(2006/12) -

DOI
409. Somatic cytokinesis and pollen maturation in Arabidopsis depend on TPLATE, which has domains similar to coat proteins.

Van Damme D, Coutuer S, De Rycke R, Bouget FY, Inzé D, Geelen D

(2006/12) - The Plant cell

DOI
408. A hormone and proteome approach to picturing the initial metabolic events during Plasmodiophora brassicae infection on Arabidopsis.

Devos S, Laukens K, Deckers P, Van Der Straeten D, Beeckman T, Inzé D, Van Onckelen H, Witters E, Prinsen E

(2006/12) - Molecular Plant-Microbe Interactions

DOI
407. The cyclin-dependent kinase inhibitor Orysa;KRP1 plays an important role in seed development of rice.

Barrôco RM, Peres A, Droual AM, De Veylder L, Nguyen le SL, De Wolf J, Mironov V, Peerbolte R, Beemster GT, Inzé D, Broekaert WF, Frankard V

(2006/11) -

DOI
406. SIAMESE, a plant-specific cell cycle regulator, controls endoreplication onset in Arabidopsis thaliana.

Churchman ML, Brown ML, Kato N, Kirik V, Hülskamp M, Inzé D, De Veylder L, Walker JD, Zheng Z, Oppenheimer DG, Gwin T, Churchman J, Larkin JC

(2006/11) -

DOI
405. Reactive oxygen species as signals that modulate plant stress responses and programmed cell death.

Gechev TS, Van Breusegem F, Stone JM, Denev I, Laloi C

(2006/11) -

DOI
404. What if higher plants lack a CDC25 phosphatase?

Boudolf V, Inzé D, De Veylder L

(2006/10) -

DOI
403. Paternity analysis of Populus nigra L. offspring in a Belgian plantation of native and exotic poplars

Vanden Broeck A, Cottrell, J, Quataert P, Breyne P, Storme V, Boerjan W, Van Slycken J

(2006/10) - Annals of Forest Science

DOI
402. The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

G. A. Tuskan, S. DiFazio, S. Jansson, J. Bohlmann, I. Grigoriev, U. Hellsten, N. Putnam, S. Ralph, S. Rombauts, A. Salamov, J. Schein, L. Sterck, A. Aerts, R. R. Bhalerao, R. P. Bhalerao, D. Blaudez, W. Boerjan, A. Brun, A. Brunner, V. Busov, M. Campbell, J. Carlson, M. Chalot, J. Chapman, G.-L. Chen, D. Cooper, P. M. Coutinho, J. Couturier, S. Covert, Q. Cronk, R. Cunningham, J. Davis, S. Degroeve, A. Déjardin, C. dePamphilis, J. Detter, B. Dirks, I. Dubchak, S. Duplessis, J. Ehlting, B. Ellis, K. Gendler, D. Goodstein, M. Gribskov, J. Grimwood, A. Groover, L. Gunter, B. Hamberger, B. Heinze, Y. Helariutta, B. Henrissat, Wout Boerjan

(2006/09) - Science

DOI
401. Inferring Transcriptional Networks by Mining Omics Data

Tim Van den Bulcke, Karen Lemmens, Yves Van de Peer, Kathleen Marchal

(2006/08) - Current Bioinformatics

DOI
400. Signaling and Gene Expression for Water-Tolerant Legume Nodulation

Griet Den Herder, Katrien Schroeyers, Marcelle Holsters, Sofie Goormachtig

(2006/08) - Critical Reviews in Plant Sciences

DOI
399. A novel role for abscisic acid emerges from underground.

De Smet I, Zhang H, Inzé D, Beeckman T

(2006/08) - Trends in Plant Science

DOI
398. Genetical metabolomics of flavonoid biosynthesis in Populus: a case study

Kris Morreel, Geert Goeminne, Véronique Storme, Lieven Sterck, John Ralph, Wouter Coppieters, Peter Breyne, Marijke Steenackers, Michel Georges, Eric Messens, Wout Boerjan

(2006/07) - The Plant Journal

DOI
397. Arabidopsis PASTICCINO2 is an antiphosphatase involved in regulation of cyclin-dependent kinase A.

Da Costa M, Bach L, Landrieu I, Bellec Y, Catrice O, Brown S, De Veylder L, Lippens G, Inzé D, Faure JD

(2006/06) -

DOI
396. Transcriptomic footprints disclose specificity of reactive oxygen species signaling in Arabidopsis.

Gadjev I, Vanderauwera S, Gechev TS, Laloi C, Minkov IN, Shulaev V, Apel K, Inzé D, Mittler R, Van Breusegem F

(2006/06) -

DOI
395. Nitric oxide- and hydrogen peroxide-responsive gene regulation during cell death induction in tobacco.

Zago E, Morsa S, Dat JF, Alard P, Ferrarini A, Inzé D, Delledonne M, Van Breusegem F

(2006/06) -

DOI
394. Reactive oxygen species in plant cell death.

Van Breusegem F, Dat JF

(2006/06) -

DOI
393. Aging in legume symbiosis. A molecular view on nodule senescence in Medicago truncatula.

Van de Velde W, Guerra JC, De Keyser A, De Rycke R, Rombauts S, Maunoury N, Mergaert P, Kondorosi E, Holsters M, Goormachtig S

(2006/06) -

DOI
392. Quantitation of artemisinin and its biosynthetic precursors in Artemisia annua L. by high performance liquid chromatography–electrospray quadrupole time-of-flight tandem mass spectrometry

Filip C.W. Van Nieuwerburgh, Sofie R.F. Vande Casteele, Lies Maes, Alain Goossens, Dirk Inzé, Jan Van Bocxlaer, Dieter L.D. Deforce

(2006/06) - Journal of Chromatography A

DOI
391. Induction of systemic resistance in tomato by N-acyl-L-homoserine lactone-producing rhizosphere bacteria.

Schuhegger R, Ihring A, Gantner S, Bahnweg G, Knappe C, Vogg G, Hutzler P, Schmid M, Van Breusegem F, Eberl L, Hartmann A, Langebartels C

(2006/05) -

DOI
390. Gene-to-metabolite networks for terpenoid indole alkaloid biosynthesis in Catharanthus roseus cells

Heiko Rischer, Matej Orešič, Tuulikki Seppänen-Laakso, Mikko Katajamaa, Freya Lammertyn, Wilson Ardiles-Diaz, Marc C. E. Van Montagu, Dirk Inzé, Kirsi-Marja Oksman-Caldentey, Alain Goossens

(2006/04) - Proceedings of the National Academy of Sciences

DOI
389. The TORNADO1 and TORNADO2 genes function in several patterning processes during early leaf development in Arabidopsis thaliana.

Cnops G, Neyt P, Raes J, Petrarulo M, Nelissen H, Malenica N, Luschnig C, Tietz O, Ditengou F, Palme K, Azmi A, Prinsen E, Van Lijsebettens M

(2006/04) -

DOI
388. Lateral Root Initiation or the Birth of a New Meristem

Ive De Smet, Steffen Vanneste, Dirk Inzé, Tom Beeckman

(2006/04) - Plant Molecular Biology

DOI
387. Evolutionary genetics: When duplicated genes don't stick to the rules

Y Van de Peer

(2006/03) - Heredity

DOI
386. Cell cycle-dependent targeting of a kinesin at the plasma membrane demarcates the division site in plant cells.

Vanstraelen M, Van Damme D, De Rycke R, Mylle E, Inzé D, Geelen D

(2006/02) - Current biology : CB

DOI
385. The Arabidopsis leaf as a model system for investigating the role of cell cycle regulation in organ growth.

Beemster GT, Vercruysse S, De Veylder L, Kuiper M, Inzé D

(2006/01) -

DOI
384. A positive signal from the fertilization of the egg cell sets off endosperm proliferation in angiosperm embryogenesis.

Nowack MK, Grini PE, Jakoby MJ, Lafos M, Koncz C, Schnittger A

(2006/01) -

DOI
383. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

Tineke Casneuf, Stefanie De Bodt, Jeroen Raes, Steven Maere, Yves Van de Peer

(2006) - Genome Biology

DOI
382. The gain and loss of genes during 600 million years of vertebrate evolution

Tine Blomme, Klaas Vandepoele, Stefanie De Bodt, Cedric Simillion, Steven Maere, Yves Van de Peer

(2006) - Genome Biology

DOI
381. Helicoidal transfer matrix model for inhomogeneous DNA melting

Michoel, T., Van De Peer, Y.

(2006) - Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

DOI
380. Feature extraction using clustering of protein

Bonet, I., Saeys, Y., Ábalo, R.G., García, M.M., Sanchez, R., Van De Peer, Y.

(2006) - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

DOI
379. Promoter analysis of MADS-box genes in eudicots through phylogenetic footprinting

De Bodt, S., Theissen, G., Van De Peer, Y.

(2006) - Molecular Biology and Evolution

DOI
378. The small RNA world of plants

Bonnet, E., Van De Peer, Y., Rouzé, P.

(2006) - New Phytologist

DOI
377. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

Tuskan, G.A., DiFazio, S., Jansson, S., Bohlmann, J., Grigoriev, I., Hellsten, U., Putnam, M., Ralph, S., Rombauts, S., Salamov, A., Schein, J., Sterck, L., Aerts, A., Bhalerao, R.R., Bhalerao, R.P., Blaudez, D., Boerjan, W., Brun, A., Brunner, A., Busov, V., Campbell, M., Carlson, J., Chalot, M., Chapman, J., Chen, G.-L., Cooper, D., Coutinho, P.M., Couturier, J., Covert, S., Cronk, Q., Cunningham, R., Davis, J., Degroeve, S., Dŕjardin, A., DePamphilis, C., Detter, J., Dirks, B., Dubchak, I., Duplessis, S., Ehlting, J., Ellis, B., Gendler, K., Goodstein, D., Gribskov, M., Grimwood, J., Groover, A., Gunter, L., Hamberger, B., Heinze, B., Helariutta, Y., Henrissat, B., Holligan, D., Holt, R., Huang, W., Islam-Faridi, N., Jones, S., Jones-Rhoades, M., Jorgensen, R., Joshi, C., Kangasjärvi, J., Karlsson, J., Kelleher, C., Kirkpatrick, R., Kirst, M., Kohler, A., Kalluri, U., Larimer, F., Leebens-Mack, J., Leplé, J.-C., Locascio, P., Lou, Y., Lucas, S., Martin, F., Montanini, B., Napoli, C., Nelson, D.R., Nelson, C., Nieminen, K., Nilsson, O., Pereda, V., Peter, G., Philippe, R., Pilate, G., Poliakov, A., Razumovskaya, J., Richardson, P., Rinaldi, C., Ritland, K., Rouzé, P., Ryaboy, D., Schmutz, J., Schrader, J., Segerman, B., Shin, H., Siddiqui, A., Sterky, F., Terry, A., Tsai, C.-J., Uberbacher, E., Unneberg, P., Vahala, J., Wall, K., Wessler, S., Yang, G., Yin, T., Douglas, C., Marra, M., Sandberg, G., Van De Peer, Y., Rokhsar, D.

(2006) - Science

DOI
376. An improved statistical method for detecting heterotachy in nucleotide sequences

Baele, G., Raes, J., Van De Peer, Y., Vansteelandt, S.

(2006) - Molecular Biology and Evolution

DOI
375. Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

Cannon, S.B., Sterck, L., Rombauts, S., Sato, S., Cheung, F., Gouzy, J., Wang, X., Mudge, J., Vasdewani, J., Scheix, T., Spannagl, M., Monaghan, E., Nicholson, C., Humphray, S.J., Schoof, H., Mayer, K.F.X., Rogers, J., Quétier, F., Oldroyd, G.E., Debellé, F., Cook, D.R., Retzel, E.F., Roe, B.A., Town, C.D., Tabata, S., Van De Peer, Y., Young, N.D.

(2006) - Proceedings of the National Academy of Sciences of the United States of America

DOI
374. Feature ranking using an EDA-based wrapper approach

Saeys, Y., Degroeve, S., Van De Peer, Y.

(2006) - Studies in Fuzziness and Soft Computing

DOI
373. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

Derelle, E., Ferraz, C., Rombauts, S., Rouzé, P., Worden, A.Z., Robbens, S., Partensky, F., Degroeve, S., Echeynié, S., Cooke, R., Saeys, Y., Wuyts, J., Jabbari, K., Bowler, C., Panaud, O., Piégu, B., Ball, S.G., Ral, J.-P., Bouget, F.-Y., Piganeau, G., De Baets, B., Pícard, A., Delseny, M., Demaille, J., Van De Peer, Y., Moreau, H.

(2006) - Proceedings of the National Academy of Sciences of the United States of America

DOI
372. Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics

Vandepoele, K., Casneuf, T., Van de Peer, Y.

(2006) - Genome Biology

DOI
371. Cell cycle regulation in plant development.

Inzé D, De Veylder L

(2006) -

DOI
370. Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana

Casneuf, T, De Bodt, S, Raes, J, Maere, S, Van de Peer, Y

(2006) - Genome Biology

DOI
369. The gain and loss of genes during 600 million years of vertebrate evolution

Blomme, Tine, Vandepoele, Klaas, De Bodt, Stefanie, Simillion, Cedric, Maere, Steven, Van de Peer, Yves

(2006) - Genome Biology

DOI
368. A novel role for abscisic acid emerges from underground

De Smet, I., Zhang, H. M., Inze, D., Beeckman, T.

(2006) - Trends in Plant Science

DOI
367. Lateral root initiation or the birth of a new meristem

De Smet, I., Vanneste, S., Inze, D., Beeckman, T.

(2006) - Plant Molecular Biology

DOI
366. Exploration of jasmonate signalling via automated and standardized transient expression assays in tobacco cells

Valerie De Sutter, Rudy Vanderhaeghen, Sofie Tilleman, Freya Lammertyn, Isabelle Vanhoutte, Mansour Karimi, Dirk Inzé, Alain Goossens, Pierre Hilson

(2005/12) - The Plant Journal

DOI
365. Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana.

Vanneste S, De Rybel B, Beemster GT, Ljung K, De Smet I, Van Isterdael G, Naudts M, Iida R, Gruissem W, Tasaka M, Inzé D, Fukaki H, Beeckman T

(2005/11) -

DOI
364. Switching the cell cycle. Kip-related proteins in plant cell cycle control.

Verkest A, Weinl C, Inzé D, De Veylder L, Schnittger A

(2005/11) -

DOI
363. Postglacial migration of Populus nigra L.: lessons learnt from chloroplast DNA

Cottrell, JE, Krystufek V, Tabbener HE, Milner AD, Connolly T, Sing L, Fluch S, Burg K, Lefèvre F, Achard P, Bordács S, Gebhardt K, Vornam B, Smulders MJM, Vanden Broeck AH, Van Slycken J, Storme V, Boerjan W, Castiglione S, Fossati T, Alba N, Agúndez D, Maestro C, Notivol E, Bovenschen J, Van Dam BC

(2005/11) - Forest Ecology and Management

DOI
362. Metabolite Profiling Reveals a Role for Atypical Cinnamyl Alcohol Dehydrogenase CAD1 in the Synthesis of Coniferyl Alcohol in Tobacco Xylem

Isabelle Damiani, Kris Morreel, Saïda Danoun, Geert Goeminne, Nabila Yahiaoui, Christiane Marque, Joachim Kopka, Eric Messens, Deborah Goffner, Wout Boerjan, Alain-Michel Boudet, Soizic Rochange

(2005/11) - Plant Molecular Biology

DOI
361. Intraspecific and interspecific genetic and phylogenetic relationships in the genus Populus based on AFLP markers

M. T. Cervera, V. Storme, A. Soto, B. Ivens, M. Van Montagu, O. P. Rajora, W. Boerjan

(2005/11) - Theoretical and Applied Genetics

DOI
360. Gibberellins are involved in nodulation of Sesbania rostrata.

Lievens S, Goormachtig S, Den Herder J, Capoen W, Mathis R, Hedden P, Holsters M

(2005/11) -

DOI
359. Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis.

Vanderauwera S, Zimmermann P, Rombauts S, Vandenabeele S, Langebartels C, Gruissem W, Inzé D, Van Breusegem F

(2005/10) -

DOI
358. Functional redundancy of PIN proteins is accompanied by auxin-dependent cross-regulation of PIN expression.

Vieten A, Vanneste S, Wisniewska J, Benková E, Benjamins R, Beeckman T, Luschnig C, Friml J

(2005/10) - Development

DOI
357. Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana.

Vanneste S, De Rybel B, Beemster GT, Ljung K, De Smet I, Van Isterdael G, Naudts M, Iida R, Gruissem W, Tasaka M, Inzé D, Fukaki H, Beeckman T

(2005/10) - The Plant Cell

DOI
356. The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division.

Magyar Z, De Veylder L, Atanassova A, Bakó L, Inzé D, Bögre L

(2005/09) -

DOI
355. Genome-wide identification of potential plant E2F target genes.

Vandepoele K, Vlieghe K, Florquin K, Hennig L, Beemster GT, Gruissem W, Van de Peer Y, Inzé D, De Veylder L

(2005/09) -

DOI
354. Methyl jasmonate stimulates the de novo biosynthesis of vitamin C in plant cell suspensions

Beata A. Wolucka, Alain Goossens, Dirk Inzé

(2005/09) - Journal of Experimental Botany

DOI
353. Molecular changes associated with the setting up of secondary growth in aspen

Damien van Raemdonck, Edouard Pesquet, Sophie Cloquet, Hans Beeckman, Wout Boerjan, Deborah Goffner, Mondher El Jaziri, Marie Baucher

(2005/08) - Journal of Experimental Botany

DOI
352. Fatty acid hydroperoxides and H2O2 in the execution of hypersensitive cell death in tobacco leaves.

Montillet JL, Chamnongpol S, Rustérucci C, Dat J, van de Cotte B, Agnel JP, Battesti C, Inzé D, Van Breusegem F, Triantaphylidès C

(2005/07) -

DOI
351. SrSymRK, a plant receptor essential for symbiosome formation.

Capoen W, Goormachtig S, De Rycke R, Schroeyers K, Holsters M

(2005/07) -

DOI
350. Genome-wide analysis of gene expression profiles associated with cell cycle transitions in growing organs of Arabidopsis.

Beemster GT, De Veylder L, Vercruysse S, West G, Rombaut D, Van Hummelen P, Galichet A, Gruissem W, Inzé D, Vuylsteke M

(2005/06) -

DOI
349. The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes.

Verkest A, Manes CL, Vercruysse S, Maes S, Van Der Schueren E, Beeckman T, Genschik P, Kuiper M, Inzé D, De Veylder L

(2005/06) -

DOI
348. Novel functions of plant cyclin-dependent kinase inhibitors, ICK1/KRP1, can act non-cell-autonomously and inhibit entry into mitosis.

Weinl C, Marquardt S, Kuijt SJ, Nowack MK, Jakoby MJ, Hülskamp M, Schnittger A

(2005/06) -

DOI
347. The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth.

Nelissen H, Fleury D, Bruno L, Robles P, De Veylder L, Traas J, Micol JL, Van Montagu M, Inzé D, Van Lijsebettens M

(2005/05) -

DOI
346. The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth.

Nelissen H, Fleury D, Bruno L, Robles P, De Veylder L, Traas J, Micol JL, Van Montagu M, Inzé D, Van Lijsebettens M

(2005/05) -

DOI
345. Biotechnology and the domestication of forest trees

Wout Boerjan

(2005/04) - Current Opinion in Biotechnology

DOI
344. Identification of Four Adenosine Kinase Isoforms in Tobacco By-2 Cells and Their Putative Role in the Cell Cycle-regulated Cytokinin Metabolism

Zuzanna Kwade, Agnieszka Świaątek, Abdelkrim Azmi, Alain Goossens, Dirk Inzé, Harry Van Onckelen, Luc Roef

(2005/04) - Journal of Biological Chemistry

DOI
343. The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes.

Verkest A, Manes CL, Vercruysse S, Maes S, Van Der Schueren E, Beeckman T, Genschik P, Kuiper M, Inzé D, De Veylder L

(2005/04) - The Plant Cell

DOI
342. Plant formin AtFH5 is an evolutionarily conserved actin nucleator involved in cytokinesis.

Ingouff M, Fitz Gerald JN, Guérin C, Robert H, Sørensen MB, Van Damme D, Geelen D, Blanchoin L, Berger F

(2005/03) - Nature cell biology

DOI
341. Identification and dynamics of two classes of aurora-like kinases in Arabidopsis and other plants.

Demidov D, Van Damme D, Geelen D, Blattner FR, Houben A

(2005/02) - The Plant cell

DOI
340. The role of the cell cycle machinery in resumption of postembryonic development.

Barrôco RM, Van Poucke K, Bergervoet JH, De Veylder L, Groot SP, Inzé D, Engler G

(2005/01) -

DOI
339. The DP-E2F-like gene DEL1 controls the endocycle in Arabidopsis thaliana.

Vlieghe K, Boudolf V, Beemster GT, Maes S, Magyar Z, Atanassova A, de Almeida Engler J, De Groodt R, Inzé D, De Veylder L

(2005/01) -

DOI
338. Towards a prokaryotic genomic taxonomy

COENYE, T, GEVERS, D, VAN DE PEER, Y, VANDAMME, P, SWINGS, J

(2005) - FEMS MICROBIOLOGY REVIEWS

DOI
337. Re-evaluating prokaryotic species

GEVERS, D, COHAN, FM, LAWRENCE, JG, SPRATT, BG, COENYE, T, FEIL, EJ, STACKEBRANDT, E, VAN DE PEER, Y, VANDAMME, P, THOMPSON, FL, SWINGS, J

(2005) - NATURE REVIEWS MICROBIOLOGY

DOI
336. Modeling gene and genome duplications in eukaryotes

MAERE, S, DE BODT, S, RAES, J, CASNEUF, T, VAN MONTAGU, M, KUIPER, M, VAN DE PEER, Y

(2005) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DOI
335. SpliceMachine: predicting splice sites from high-dimensional local context representations

DEGROEVE, S, SAEYS, Y, DE BAETS, B, ROUZE, P, VAN DE PEER, Y

(2005) - BIOINFORMATICS

DOI
334. Large-scale structural analysis of the core promoter in mammalian and plant genomes

FLORQUIN, K, SAEYS, Y, DEGROEVE, S, ROUZE, P, VAN DE PEER, Y

(2005) - NUCLEIC ACIDS RESEARCH

DOI
333. Genome duplication and the origin of angiosperms

De Bodt, S., Maere, S., Van De Peer, Y.

(2005) - Trends in Ecology and Evolution

DOI
332. From 2R to 3R: Evidence for a fish-specific genome duplication (FSGD)

Meyer, A., Van De Peer, Y.

(2005) - BioEssays

DOI
331. Exploring the plant transcriptome through phylogenetic profiling

Vandepoele, K., Van De Peer, Y.

(2005) - Plant Physiology

DOI
330. Functional divergence of proteins through frameshift mutations

Raes, J., Van De Peer, Y.

(2005) - Trends in Genetics

DOI
329. Genome-wide identification of potential plant E2F target genes

Vandepoele, K., Vlieghe, K., Florquin, K., Hennig, L., Beemster, G.T.S., Gruissem, W., Van De Peer, Y., Inzé, D., De Veylder, L.

(2005) - Plant Physiology

DOI
328. Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri

Robbens, S., Khadaroo, B., Camasses, A., Derelle, E., Ferraz, C., Inzé, D., Van De Peer, Y., Moreau, H.

(2005) - Molecular Biology and Evolution

DOI
327. Large-Scale Gene and Ancient Genome Duplications

Van De Peer, Y., Meyer, A.

(2005) - The Evolution of the Genome

DOI
326. A novel approach to identifying regulatory motifs in distantly related genomes

Van Hellemont R, Monsieurs P, Thijs G, De Moor B, Van de Peer Y, Marchal K

(2005) - Genome Biology

DOI
325. Deletions involving long-range conserved nongenic sequences upstream and downstream of FOXL2 as a novel disease-causing mechanism in blepharophimosis syndrome

Beysen, D., Raes, J., Leroy, B.P., Lucassen, A., Yates, J.R.W., Clayton-Smith, J., Ilyina, H., Brooks, S.S., Christin-Maitre, S., Fellous, M., Fryns, J.P., Kim, J.R., Lapunzina, P., Lemyre, E., Meire, F., Messiaen, L.M., Oley, C., Splitt, M., Thomson, J., Van De Peer, Y., Veitia, R.A., De Paepe, A., De Baere, E.

(2005) - American Journal of Human Genetics

DOI
324. Ancient duplication of cereal genomes

Paterson, A.H., Bowers, J.E., Van De Peer, Y., Vandepoele, K.

(2005) - New Phytologist

DOI
323. EST data suggest that poplar is an ancient polyploid

Sterck, L., Rombauts, S., Jansson, S., Sterky, F., Rouzé, P., Van De Peer, Y.

(2005) - New Phytologist

DOI
322. Modeling gene and genome duplications in eukaryotes

Maere, S, De Bodt, S, Raes, J, Casneuf, T, Van Montagu, M, Kuiper, M, Van de Peer, Y

(2005) - Proceedings of the National Academy of Sciences of the United States of America

DOI
321. Genome duplication and the origin of angiosperms

De Bodt, S, Maere, S, Van de Peer, Y

(2005) - Trends in Ecology & Evolution

DOI
320. BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks

Maere, S, Heymans, K, Kuiper, M

(2005) - Bioinformatics

DOI
319. Auxin regulation of cell cycle and its role during lateral root initiation

Vanneste, S., Maes, L., De Smet, I., Himanen, K., Naudts, M., Inze, D., Beeckman, T.

(2005) - Physiologia Plantarum

DOI
318. Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana

Vanneste, S., De Rybel, B., Beemster, G. T. S., Ljung, K., De Smet, I., Van Isterdael, G., Naudts, M., Iida, R., Gruissem, W., Tasaka, M., Inze, D., Fukaki, H., Beeckman, T.

(2005) - Plant Cell

DOI
317. A reproducible genetic transformation system for cultivated Phaseolus acutifolius (tepary bean) and its use to assess the role of arcelins in resistance to the Mexican bean weevil.

Zambre M, Goossens A, Cardona C, Van Montagu M, Terryn N, Angenon G

(2005) - Theoretical and Applied Genetics

No link available
316. Phenolic Profiling of Caffeic Acid O-Methyltransferase-Deficient Poplar Reveals Novel Benzodioxane Oligolignols

Kris Morreel, John Ralph, Fachuang Lu, Geert Goeminne, Roger Busson, Piet Herdewijn, Jan L. Goeman, Johan Van der Eycken, Wout Boerjan, Eric Messens

(2004/12) - Plant Physiology

DOI
315. A technology platform for the fast production of monoclonal recombinant antibodies against plant proteins and peptides.

Eeckhout D, De Clercq A, Van De Slijke E, Van Leene J, Stals H, Casteels P, Persiau G, Vercammen D, Van Breusegem F, Zabeau M, Inzé D, Jespers L, Depicker A, De Jaeger G

(2004/11) -

DOI
314. Profiling of Oligolignols Reveals Monolignol Coupling Conditions in Lignifying Poplar Xylem

Kris Morreel, John Ralph, Hoon Kim, Fachuang Lu, Geert Goeminne, Sally Ralph, Eric Messens, Wout Boerjan

(2004/11) - Plant Physiology

DOI
313. Rhizobium infection: lessons from the versatile nodulation behaviour of water-tolerant legumes.

Goormachtig S, Capoen W, Holsters M

(2004/11) -

DOI
312. Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins.

Van Damme D, Bouget FY, Van Poucke K, Inzé D, Geelen D

(2004/11) - The Plant journal : for cell and molecular biology

DOI
311. In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.

Van Damme D, Van Poucke K, Boutant E, Ritzenthaler C, Inzé D, Geelen D

(2004/11) - Plant physiology

DOI
310. Computational approaches to unveiling ancient genome duplications

Yves Van de Peer

(2004/10) - Nature Reviews Genetics

DOI
309. The plant-specific cyclin-dependent kinase CDKB1;1 and transcription factor E2Fa-DPa control the balance of mitotically dividing and endoreduplicating cells in Arabidopsis.

Boudolf V, Vlieghe K, Beemster GT, Magyar Z, Torres Acosta JA, Maes S, Van Der Schueren E, Inzé D, De Veylder L

(2004/10) -

DOI
308. Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine.

Vercammen D, van de Cotte B, De Jaeger G, Eeckhout D, Casteels P, Vandepoele K, Vandenberghe I, Van Beeumen J, Inzé D, Van Breusegem F

(2004/10) -

DOI
307. Reactive oxygen gene network of plants.

Mittler R, Vanderauwera S, Gollery M, Van Breusegem F

(2004/10) -

DOI
306. Molecular Phenotyping of the pal1 and pal2 Mutants of Arabidopsis thaliana Reveals Far-Reaching Consequences on Phenylpropanoid, Amino Acid, and Carbohydrate Metabolism

Antje Rohde, Kris Morreel, John Ralph, Geert Goeminne, Vanessa Hostyn, Riet De Rycke, Sergej Kushnir, Jan Van Doorsselaere, Jean-Paul Joseleau, Marnik Vuylsteke, Gonzalez Van Driessche, Jozef Van Beeumen, Eric Messens, Wout Boerjan

(2004/10) - The Plant Cell

DOI
305. Genetic and physical mapping of Melampsora rust resistance genes in Populus and characterization of linkage disequilibrium and flanking genomic sequence

T.‐M. Yin, S. P. DiFazio, L. E. Gunter, S. S. Jawdy, W. Boerjan, G. A. Tuskan

(2004/10) - New Phytologist

DOI
304. A small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana.

Landrieu I, da Costa M, De Veylder L, Dewitte F, Vandepoele K, Hassan S, Wieruszeski JM, Corellou F, Faure JD, Van Montagu M, Inzé D, Lippens G

(2004/09) -

DOI
303. Characterization of the Arabidopsis thaliana Arath;CDC25 dual-specificity tyrosine phosphatase.

Landrieu I, Hassan S, Sauty M, Dewitte F, Wieruszeski JM, Inzé D, De Veylder L, Lippens G

(2004/09) -

DOI
302. Gene flow between cultivated poplars and native black poplar (Populus nigra L.): a case study along the river Meuse on the Dutch–Belgian border

A Vanden Broeck, V Storme, J.E Cottrell, W Boerjan, E Van Bockstaele, P Quataert, J Van Slycken

(2004/08) - Forest Ecology and Management

DOI
301. Disclosing the subterranean treasury of plants.

Beeckman T

(2004/08) - Trends in Biotechnology

DOI
300. Belo Horizonte virus: a vaccinia-like virus lacking the A-type inclusion body gene isolated from infected mice

Giliane S. Trindade, Flávio G. da Fonseca, João T. Marques, Sueli Diniz, Juliana A. Leite, Stefanie De Bodt, Yves Van der Peer, Cláudio A. Bonjardim, Paulo C. P. Ferreira, Erna G. Kroon

(2004/07) - Journal of General Virology

DOI
299. A plant-specific subclass of C-terminal kinesins contains a conserved a-type cyclin-dependent kinase site implicated in folding and dimerization.

Vanstraelen M, Torres Acosta JA, De Veylder L, Inzé D, Geelen D

(2004/07) -

DOI
298. Catalase deficiency drastically affects gene expression induced by high light in Arabidopsis thaliana.

Vandenabeele S, Vanderauwera S, Vuylsteke M, Rombauts S, Langebartels C, Seidlitz HK, Zabeau M, Van Montagu M, Inzé D, Van Breusegem F

(2004/07) -

DOI
297. Molecular characterization of Arabidopsis PHO80 like proteins, a novel class of CDKA;1 interacting cyclins

Torres Acosta JA, de Almeida Engler J, Raes J, Magyar Z, De Groodt R, Inzé D, De Veylder L

(2004/06) - Cellular and Molecular Life Sciences

DOI
296. Annotation of a 95-kb Populus deltoides genomic sequence reveals a disease resistance gene cluster and novel class I and class II transposable elements

M. Lescot, S. Rombauts, J. Zhang, S. Aubourg, C. Mathé, S. Jansson, P. Rouzé, W. Boerjan

(2004/06) - Theoretical and Applied Genetics

DOI
295. Analysis of the spatial expression pattern of seven Kip related proteins (KRPs) in the shoot apex of Arabidopsis thaliana.

Ormenese S, de Almeida Engler J, De Groodt R, De Veylder L, Inzé D, Jacqmard A

(2004/05) -

DOI
294. B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana.

Boudolf V, Barrôco R, Engler Jde A, Verkest A, Beeckman T, Naudts M, Inzé D, De Veylder L

(2004/04) -

DOI
293. Ex-situ conservation of Black poplar in Europe: genetic diversity in nine gene bank collections and their value for nature development

V. Storme, A. Vanden Broeck, B. Ivens, D. Halfmaerten, J. Van Slycken, S. Castiglione, F. Grassi, T. Fossati, J. E. Cottrell, H. E. Tabbener, F. Lefèvre, C. Saintagne, S. Fluch, V. Krystufek, K. Burg, S. Bordács, A. Borovics, K. Gebhardt, B. Vornam, A. Pohl, N. Alba, D. Agúndez, C. Maestro, E. Notivol, J. Bovenschen, B. C. van Dam, J. van der Schoot, B. Vosman, W. Boerjan, M. J. M. Smulders

(2004/04) - Theoretical and Applied Genetics

DOI
292. Switch from intracellular to intercellular invasion during water stress-tolerant legume nodulation.

Goormachtig S, Capoen W, James EK, Holsters M

(2004/04) -

DOI
291. Phenotypic alterations in Arabidopsis thaliana plants caused by Rhodococcus fascians infection

Carmem-Lara de O. Manes, Tom Beeckman, Tita Ritsema, Marc Van Montagu, Koen Goethals, Marcelle Holsters

(2004/04) - Journal of Plant Research

DOI
290. Conditional, recombinase-mediated expression of genes in plant cell cultures.

Joubès J, De Schutter K, Verkest A, Inzé D, De Veylder L

(2004/03) -

DOI
289. Conservation of RNA structures enables TNV and BYDV 5' and 3' elements to cooperate synergistically in cap-independent translation.

Meulewaeter F, van Lipzig R, Gultyaev AP, Pleij CW, Van Damme D, Cornelissen M, van Eldik G

(2004/03) - Nucleic acids research

DOI
288. B1-type cyclin-dependent kinases are essential for the formation of stomatal complexes in Arabidopsis thaliana.

Boudolf V, Barrôco R, Engler Jde A, Verkest A, Beeckman T, Naudts M, Inzé D, De Veylder L

(2004/03) - The Plant Cell

DOI
287. Transcript profiling of early lateral root initiation.

Himanen K, Vuylsteke M, Vanneste S, Vercruysse S, Boucheron E, Alard P, Chriqui D, Van Montagu M, Inzé D, Beeckman T

(2004/03) - Proceedings of the National Academy of Sciences of the United States of America

DOI
286. Lignins: Natural polymers from oxidative coupling of 4-hydroxyphenyl- propanoids

John Ralph, Knut Lundquist, Gösta Brunow, Fachuang Lu, Hoon Kim, Paul F. Schatz, Jane M. Marita, Ronald D. Hatfield, Sally A. Ralph, Jørgen Holst Christensen, Wout Boerjan

(2004/01) - Phytochemistry Reviews

DOI
285. Nodule-enhanced protease inhibitor gene: emerging patterns of gene expression in nodule development on Sesbania rostrata.

Lievens S, Goormachtig S, Holsters M

(2004/01) -

DOI
284. An easy and versatile embedding method for transverse sections.

De Smet I, Chaerle P, Vanneste S, De Rycke R, Inzé D, Beeckman T

(2004/01) - Journal of Microscopy

DOI
283. Tetraodon genome confirms Takifugu findings: most fish are ancient polyploids

Yves Van de Peer

(2004) - Genome Biology

DOI
282. Feature selection for splice site prediction: A new method using EDA-based feature ranking

Saeys, Y., Degroeve, S., Aeyels, D., Rouzé, P., Van de Peer, Y.

(2004) - BMC Bioinformatics

DOI
281. The first green lineage cdc25 dual-specificity phosphatase

Khadaroo, B., Robbens, S., Ferraz, C., Derelle, E., Eychenié, S., Cooke, R., Peaucellier, G., Delseny, M., Demaille, J., Van De Peer, Y., Picard, A., Moreau, H.

(2004) - Cell Cycle

DOI
280. The European ribosomal RNA database

WUYTS, J, PERRIERE, G, VAN DE PEER, Y

(2004) - NUCLEIC ACIDS RESEARCH

DOI
279. The 18S rRNA from Odontophrynus americanus 2n and 4n (Amphibia, Anura) reveals unusual extra sequences in the variable region V2

ALVARES, LE, WUYTS, J, VAN DE PEER, Y, SILVA, EP, COUTINHO, LL, BRISON, O, RUIZ, IRG

(2004) - GENOME

DOI
278. Recent developments in computational approaches for uncovering genomic homology

SIMILLION, C, VANDEPOELE, K, VAN DE PEER, Y

(2004) - BIOESSAYS

DOI
277. Feature selection for splice site prediction: A new method using EDA-based feature ranking

SAEYS, Y, DEGROEVE, S, AEYELS, D, ROUZE, P, VAN DE PEER, Y

(2004) - BMC BIOINFORMATICS

No link available
276. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences

BONNET, E, WUYTS, J, ROUZE, P, VAN DE PEER, Y

(2004) - BIOINFORMATICS

DOI
275. Gene duplication and biased functional retention of paralogs in bacterial genomes

GEVERS, D, VANDEPOELE, K, SIMILLION, C, VAN DE PEER, Y

(2004) - TRENDS IN MICROBIOLOGY

DOI
274. Digging into Acceptor Splice Site Prediction: An Iterative Feature Selection Approach

Yvan Saeys, Sven Degroeve, Yves Van de Peer

(2004) - Lecture Notes in Computer Science

DOI
273. Building genomic profiles for uncovering segmental homology in the twilight zone

SIMILLION, C, VANDEPOELE, K, SAEYS, Y, VAN DE PEER, Y

(2004) - GENOME RESEARCH

DOI
272. Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates

VANDEPOELE, K, DE VOS, W, TAYLOR, JS, MEYER, A, VAN DE PEER, Y

(2004) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DOI
271. Detection of 91 potential in plant conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes

BONNET, E, WUYTS, J, ROUZE, P, VAN DE PEER, Y

(2004) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DOI
270. 'Horizontal' plant biology on the rise

Yves Van de Peer

(2004) - Genome Biology

DOI
269. Splice site prediction in eukaryote genome sequences: the algorithmic issues

Degroeve S., Saeys Y., De Baets B., Van de Peer Y., Rouzé P.

(2004) - The New Avenues in Bioinformatics

No link available
268. The quest for genomic homology

Vandepoele, K., Simillion, C., Van de Peer, Y.

(2004) - Current Genomics

DOI
267. Preparation and relevance of a cross-coupling product between sinapyl alcohol and sinapyl p-hydroxybenzoate

Fachuang Lu, John Ralph, Kris Morreel, Eric Messens, Wout Boerjan

(2004) - Organic & Biomolecular Chemistry

DOI
266. An easy and versatile embedding method for transverse sections

De Smet, I, Chaerle, P, Vanneste, S, Rycke, RD, Inze, D, Beeckman, T

(2004) - Journal of Microscopy-Oxford

DOI
265. Plant cell cycle transitions.

De Veylder L, Joubès J, Inzé D

(2003/12) -

DOI
264. A comprehensive analysis of hydrogen peroxide-induced gene expression in tobacco.

Vandenabeele S, Van Der Kelen K, Dat J, Gadjev I, Boonefaes T, Morsa S, Rottiers P, Slooten L, Van Montagu M, Zabeau M, Inze D, Van Breusegem F

(2003/12) -

DOI
263. Agrobacterium rhizogenes-mediated transformation of Sesbania rostrata

Willem Van de Velde, Joachim Mergeay, Marcelle Holsters, Sofie Goormachtig

(2003/12) - Plant Science

DOI
262. The Arabidopsis locus RCB mediates upstream regulation of mitotic gene expression.

Himanen K, Reuzeau C, Beeckman T, Melzer S, Grandjean O, Corben L, Inze D

(2003/12) - Plant Physiology

DOI
261. Genome-Wide Characterization of the Lignification Toolbox in Arabidopsis

Jeroen Raes, Antje Rohde, Jørgen Holst Christensen, Yves Van de Peer, Wout Boerjan

(2003/11) - Plant Physiology

DOI
260. Genome-Wide Characterization of the Lignification Toolbox in Arabidopsis

Jeroen Raes, Antje Rohde, Jørgen Holst Christensen, Yves Van de Peer, Wout Boerjan

(2003/11) - Plant Physiology

DOI
259. And then there were many: MADS goes genomic

Stefanie De Bodt, Jeroen Raes, Yves Van de Peer, Günter Theißen

(2003/10) - Trends in Plant Science

DOI
258. Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation.

Vlieghe K, Vuylsteke M, Florquin K, Rombauts S, Maes S, Ormenese S, Van Hummelen P, Van de Peer Y, Inze D, De Veylder L

(2003/10) -

DOI
257. Reactive oxygen species and ethylene play a positive role in lateral root base nodulation of a semiaquatic legume.

D'Haeze W, De Rycke R, Mathis R, Goormachtig S, Pagnotta S, Verplancke C, Capoen W, Holsters M

(2003/09) -

DOI
256. Stacking transgenes in forest trees

Claire Halpin, Wout Boerjan

(2003/08) - Trends in Plant Science

DOI
255. A functional genomics approach toward the understanding of secondary metabolism in plant cells

Alain Goossens, Suvi T. Häkkinen, Into Laakso, Tuulikki Seppänen-Laakso, Stefania Biondi, Valerie De Sutter, Freya Lammertyn, Anna Maria Nuutila, Hans Söderlund, Marc Zabeau, Dirk Inzé, Kirsi-Marja Oksman-Caldentey

(2003/07) - Proceedings of the National Academy of Sciences

DOI
254. Lignin Biosynthesis

Wout Boerjan, John Ralph, Marie Baucher

(2003/06) - Annual Review of Plant Biology

DOI
253. Dissecting Arabidopsis lateral root development

Ilda Casimiro, Tom Beeckman, Neil Graham, Rishikesh Bhalerao, Hanma Zhang, Pedro Casero, Goran Sandberg, Malcolm J. Bennett

(2003/04) - Trends in Plant Science

DOI
252. Secretion of Secondary Metabolites by ATP-Binding Cassette Transporters in Plant Cell Suspension Cultures

Alain Goossens, Suvi T. Häkkinen, Into Laakso, Kirsi-Marja Oksman-Caldentey, Dirk Inzé

(2003/03) - Plant Physiology

DOI
251. DRL1, a homolog of the yeast TOT4/KTI12 protein, has a function in meristem activity and organ growth in plants.

Nelissen H, Clarke JH, De Block M, De Block S, Vanderhaeghen R, Zielinski RE, Dyer T, Lust S, Inzé D, Van Lijsebettens M

(2003/03) -

DOI
250. Novel complexes of cyclin dependent kinases and a cyclin like protein from Arabidopsis thaliana with a function unrelated to cell division

Barrôco RM, De Veylder L, Magyar Z, Engler G, Inzé D, Mironov V

(2003/02) - Cellular and Molecular Life Sciences

DOI
249. Changes in hydrogen peroxide homeostasis trigger an active cell death process in tobacco.

Dat JF, Pellinen R, Beeckman T, Van De Cotte B, Langebartels C, Kangasjärvi J, Inzé D, Van Breusegem F

(2003/02) -

DOI
248. Changes in hydrogen peroxide homeostasis trigger an active cell death process in tobacco.

Dat JF, Pellinen R, Beeckman T, Van De Cotte B, Langebartels C, Kangasjärvi J, Inzé D, Van Breusegem F

(2003/02) - The Plant Journal

DOI
247. An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis.

De Smet I, Signora L, Beeckman T, Inzé D, Foyer CH, Zhang H

(2003/02) - The Plant Journal

DOI
246. Gene duplication, the evolution of novel gene functions, and detecting functional divergence of duplicates in silico

Raes J, Yves Van de Peer

(2003/01) - Applied Bioinformatics

No link available
245. Lignin: Genetic Engineering and Impact on Pulping

Marie Baucher, Claire Halpin, Michel Petit-Conil, Wout Boerjan

(2003/01) - Critical Reviews in Biochemistry and Molecular Biology

DOI
244. Genome Evolution

Yves Van de Peer

(2003) - Springer Netherlands

DOI
243. Phylogeny inference based on distance methods: theory

Yves Van de Peer

(2003) - In The Phylogenetic Handbook: a Practical Approach to DNA and Protein Phylogeny

No link available
242. Analysis of nucleotide sequences using TREECON

Yves Van de Peer

(2003) - The Phylogenetic Handbook: a Practical Approach to DNA and Protein Phylogeny

No link available
241. Are all fishes ancient polyploids?

Yves Van de Peer, John S. Taylor, Axel Meyer

(2003) - Journal of Structural and Functional Genomics

DOI
240. Are all fish ancient tetraploids?

Yves Van de Peer, Taylor JS, Meyer A

(2003) - Genome Evolution: Gene and Genome Duplications and the Origin of Novel Gene Functions

No link available
239. Investigating ancient duplication events in the Arabidopsis genome

Jeroen Raes, Klaas Vandepoele, Cedric Simillion, Yvan Saeys, Yves Van de Peer

(2003) - Journal of Structural and Functional Genomics

DOI
238. Structural diversification and neo-functionalization during floral MADS-box gene evolution by C-terminal frameshift mutations

VANDENBUSSCHE, M, THEISSEN, G, VAN DE PEER, Y, GERATS, T

(2003) - NUCLEIC ACIDS RESEARCH

DOI
237. Genome duplication, a trait shared by 22,000 species of ray-finned fish

TAYLOR, JS, BRAASCH, I, FRICKEY, T, MEYER, A, VAN DE PEER, Y

(2003) - GENOME RESEARCH

DOI
236. Investigating ancient duplication events in the Arabidopsis genome

Jeroen Raes, Klaas Vandepoele, Cedric Simillion, Yvan Saeys, Yves Van de Peer

(2003) - Genome Evolution

DOI
235. Genomewide structural annotation and evolutionary analysis of the type I MADS-box genes in plants

DE BODT, S, RAES, J, FLORQUIN, K, ROMBAUTS, S, ROUZE, P, THEISSEN, G, VAN DE PEER, Y

(2003) - JOURNAL OF MOLECULAR EVOLUTION

DOI
234. Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction

SAEYS, Y, DEGROEVE, S, AEYELS, D, VAN DE PEER, Y, ROUZE, P

(2003) - BIOINFORMATICS

DOI
233. Computational approaches to identify promoters and cis-regulatory elements in plant genomes

ROMBAUTS, S, FLORQUIN, K, LESCOT, M, MARCHAL, K, ROUZE, P, VAN DE PEER, Y

(2003) - PLANT PHYSIOLOGY

DOI
232. Analysis of the evolutionary relationships of HIV-1 and SIVcpz sequences using Bayesian inference: Implications for the origin of HIV-1

PARASKEVIS, D, LEMEY, P, SALEMI, M, SUCHARD, M, VAN DE PEER, Y, VANDAMME, AM

(2003) - MOLECULAR BIOLOGY AND EVOLUTION

DOI
231. AFLPinSilico, simulating AFLP fingerprints

ROMBAUTS, S, VAN DE PEER, Y, ROUZE, P

(2003) - BIOINFORMATICS

DOI
230. Evidence that rice and other cereals are ancient aneuploids

VANDEPOELE, K, SIMILLION, C, VAN DE PEER, Y

(2003) - PLANT CELL

DOI
229. Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation

VLIEGHE, K, VUYLSTEKE, M, FLORQUIN, K, ROMBAUTS, S, MAES, S, ORMENESE, S, VAN HUMMELEN, P, VAN DE PEER, Y, INZE, D, DE VEYLDER, L

(2003) - JOURNAL OF CELL SCIENCE

DOI
228. 'Natural selection merely modified while redundancy created' - Susumu Ohno's idea of the evolutionary importance of gene and genome duplications

Meyer, A., Van de Peer, Y.

(2003) - Journal of Structural and Functional Genomics

DOI
227. Microbial reduction and precipitation of vanadium by Shewanella oneidensis

Carpentier, W, Sandra, K, De Smet, I, Brige, A, De Smet, L, Van Beeumen, J

(2003) - Applied and Environmental Microbiology

DOI
226. An abscisic acid-sensitive checkpoint in lateral root development of Arabidopsis

De Smet, I, Signora, L, Beeckman, T, Inze, D, Foyer, CH, Zhang, HM

(2003) - Plant Journal

DOI
225. Expression of a poplar ferulate 5 hydroxylase/coniferaldehyde 5 hydroxylase increases S lignin deposition in Arabidopsis thaliana

Sibout R, Baucher M, Gatineau M, Van Doorsselaere, J, Mila I, Pollet B, Maba B, Pilate G, Lapierre C, Boerjan W, Jouanin L

(2002/12) - Plant Physiology and Biochemistry

DOI
224. Boosting heterologous protein production in transgenic dicotyledonous seeds using Phaseolus vulgaris regulatory sequences

Geert De Jaeger, Stanley Scheffer, Anni Jacobs, Mukund Zambre, Oliver Zobell, Alain Goossens, Ann Depicker, Geert Angenon

(2002/12) - Nature Biotechnology

DOI
223. Genetic complexity of cellulose synthase a gene function in Arabidopsis embryogenesis.

Beeckman T, Przemeck GK, Stamatiou G, Lau R, Terryn N, De Rycke R, Inzé D, Berleth T

(2002/12) - Plant Physiology

DOI
222. Transcriptome analysis during cell division in plants.

Breyne P, Dreesen R, Vandepoele K, De Veylder L, Van Breusegem F, Callewaert L, Rombauts S, Raes J, Cannoot B, Engler G, Inzé D, Zabeau M

(2002/11) -

DOI
221. Transcriptome analysis during cell division in plants.

Breyne P, Dreesen R, Vandepoele K, De Veylder L, Van Breusegem F, Callewaert L, Rombauts S, Raes J, Cannoot B, Engler G, Inzé D, Zabeau M

(2002/11) -

DOI
220. Double antisense plants lacking ascorbate peroxidase and catalase are less sensitive to oxidative stress than single antisense plants lacking ascorbate peroxidase or catalase.

Rizhsky L, Hallak-Herr E, Van Breusegem F, Rachmilevitch S, Barr JE, Rodermel S, Inzé D, Mittler R

(2002/11) -

DOI
219. Auxin-mediated cell cycle activation during early lateral root initiation.

Himanen K, Boucheron E, Vanneste S, de Almeida Engler J, Inzé D, Beeckman T

(2002/10) - The Plant Cell

DOI
218. PtABI3 Impinges on the Growth and Differentiation of Embryonic Leaves during Bud Set in Poplar

Antje Rohde, Els Prinsen, Riet De Rycke, Gilbert Engler, Marc Van Montagu, Wout Boerjan

(2002/08) - The Plant Cell

DOI
217. Evolutionary Relationships among Heterokont Algae (the Autotrophic Stramenopiles) Based on Combined Analyses of Small and Large Subunit Ribosomal RNA

Abdelghani Ben Ali, Raymond De Baere, Rupert De Wachter, Yves Van de Peer

(2002/06) - Protist

DOI
216. Field and pulping performances of transgenic trees with altered lignification

Gilles Pilate, Emma Guiney, Karen Holt, Michel Petit-Conil, Catherine Lapierre, Jean-Charles Leplé, Brigitte Pollet, Isabelle Mila, Elizabeth A. Webster, Håkan G. Marstorp, David W. Hopkins, Lise Jouanin, Wout Boerjan, Wolfgang Schuch, Daniel Cornu, Claire Halpin

(2002/06) - Nature Biotechnology

DOI
215. Effect of auxin, cytokinin, and sucrose on cell cycle gene expression in Arabidopsis thaliana cell suspension cultures

Richard C, Lescot M, Inzé D, De Veylder L

(2002/05) - Plant Cell, Tissue and Organ Culture

DOI
214. Signal transduction during oxidative stress.

Vranová E, Inzé D, Van Breusegem F

(2002/05) -

DOI
213. Genome-wide analysis of core cell cycle genes in Arabidopsis.

Vandepoele K, Raes J, De Veylder L, Rouzé P, Rombauts S, Inzé D

(2002/04) -

DOI
212. Hydrogen peroxide protects tobacco from oxidative stress by inducing a set of antioxidant enzymes.

Gechev T, Gadjev I, Van Breusegem F, Inzé D, Dukiandjiev S, Toneva V, Minkov I

(2002/04) - Cellular and molecular life sciences : CMLS

DOI
211. Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor.

De Veylder L, Beeckman T, Beemster GT, de Almeida Engler J, Ormenese S, Maes S, Naudts M, Van Der Schueren E, Jacqmard A, Engler G, Inzé D

(2002/03) -

DOI
210. Control of proliferation, endoreduplication and differentiation by the Arabidopsis E2Fa-DPa transcription factor.

De Veylder L, Beeckman T, Beemster GT, de Almeida Engler J, Ormenese S, Maes S, Naudts M, Van Der Schueren E, Jacqmard A, Engler G, Inzé D

(2002/03) - The EMBO Journal

DOI
209. Patterns of pectin methylesterase transcripts in developing stem nodules of Sesbania rostrata.

Lievens S, Goormachtig S, Herman S, Holsters M

(2002/02) -

DOI
208. Involvement of Nst1p/YNL091w and Msl1p, a U2B″ splicing factor, in Saccharomyces cerevisiae salt tolerance

Alain Goossens, Javier Forment, Ramon Serrano

(2002/02) - Yeast

DOI
207. Involvement of Nst1p/YNL091w and Msl1p, a U2B'' splicing factor, in Saccharomyces cerevisiae salt tolerance.

Goossens A, Forment J, Serrano R

(2002/02) -

DOI
206. Characterization of microstructure and cell wall components of Arabidopsis thaliana overexpressing cyclin dependent kinase inhibitor 2

Salmenkallio Marttila M, Aura A-M, De Veylder L, Inzé D, Oksman Caldentey K-M

(2002/01) - Phytochemistry Reviews

DOI
205. Constitutive Overexpression of Cystathionine γ-Synthase in Arabidopsis Leads to Accumulation of Soluble Methionine andS-Methylmethionine

Jungsup Kim, Minsang Lee, Radhika Chalam, Melinda Neal Martin, Thomas Leustek, Wout Boerjan

(2002/01) - Plant Physiology

DOI
204. The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice

VANDEPOELE, K, SAEYS, Y, SIMILLION, C, RAES, J, VAN DE PEER, Y

(2002) - GENOME RESEARCH

DOI
203. Moss transcriptome and beyond

Rensing, S.A., Rombauts, S., Van De Peer, Y., Reski, R.

(2002) - Trends in Plant Science

DOI
202. The hidden duplication past of Arabidopsis thaliana

SIMILLION, C, VANDEPOELE, K, VAN MONTAGU, MCE, ZABEAU, M, VAN DE PEER, Y

(2002) - PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DOI
201. zt: A Software Tool for Simple and Partial Mantel Tests

Eric Bonnet, Yves Van de Peer

(2002) - Journal of Statistical Software

DOI
200. The European database on small subunit ribosomal RNA

Wuyts, J., Van De Peer, Y., Winkelmans, T., De Wachter, R.

(2002) - Nucleic Acids Research

DOI
199. Dealing with saturation at the amino acid level: A case study based on anciently duplicated zebrafish genes

Van De Peer, Y., Frickey, T., Taylor, J.S., Meyer, A.

(2002) - Gene

DOI
198. Signal transduction during oxidative stress

Vranová, E., Inzé, D., Van Breusegem, F.

(2002) - Journal of Experimental Botany

DOI
197. Partial purification and identification of GDP-mannose 3",5"-epimerase of Arabidopsis thaliana , a key enzyme of the plant vitamin C pathway

Beata A. Wolucka, Geert Persiau, Jan Van Doorsselaere, Mark W. Davey, Hans Demol, Joël Vandekerckhove, Marc Van Montagu, Marc Zabeau, Wout Boerjan

(2001/12) - Proceedings of the National Academy of Sciences

DOI
196. Phylogeny branches out

Yves Van de Peer

(2001/11) -

DOI
195. Fine Mapping and Identification of Nucleotide Binding Site/Leucine-Rich Repeat Sequences at the MER Locus in Populus deltoides ‘S9-2’

J. Zhang, M. Steenackers, V. Storme, S. Neyrinck, M. Van Montagu, T. Gerats, W. Boerjan

(2001/11) - Phytopathology

DOI
194. Comparative genomics provides evidence for an ancient genome duplication event in fish

John S. Taylor, Yves Van de Peer, Ingo Braasch, Axel Meyer

(2001/10) - Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences

DOI
193. NMR characterization of lignins from transgenic poplars with suppressed caffeic acid O methyltransferase activity

Marita JM, Ralph J, Lapierre C, Jouanin L, Boerjan W

(2001/10) - Journal of the Chemical Society, Perkin Transactions 1

DOI
192. A plant specific cyclin dependent kinase is involved in the control of G2/M progression in plants

Porceddu A, Stals H, Reichheld J-P, Segers G, De Veylder L, De Pinho Barrôco R, Casteels P, Van Montagu M, Inzé D, Mironov V

(2001/09) - Journal of Biological Chemistry

DOI
191. A critical evaluation of differential display as a tool to identify genes involved in legume nodulation: looking back and looking forward.

Lievens S, Goormachtig S, Holsters M

(2001/09) -

DOI
190. Srchi24, a chitinase homolog lacking an essential glutamic acid residue for hydrolytic activity, is induced during nodule development on Sesbania rostrata.

Goormachtig S, Van de Velde W, Lievens S, Verplancke C, Herman S, De Keyser A, Holsters M

(2001/09) -

DOI
189. Analysis of cell division parameters and cell cycle gene expression during the cultivation of Arabidopsis thaliana cell suspensions

Richard C, Granier C , Inzé D, De Veylder L

(2001/08) - Journal of Experimental Botany

DOI
188. The role of active oxygen species in plant signal transduction

Van Breusegem F, Vranová E, Dat JF, Inzé D

(2001/08) - Plant Science

DOI
187. o-Phenylenediamine induced DNA damage and mutagenicity in tobacco seedlings is light dependent

Gichner T, Stavreva DA, Van Breusegem F

(2001/08) - Mutation Research

DOI
186. Functional analysis of cyclin dependent kinase inhibitors of Arabidopsis

De Veylder L, Beeckman T, Beemster GTS, Krols L, Terras F, Landrieu I, Van Der Schueren E, Maes S, Naudts M, Inzé D

(2001/07) - Plant Cell

DOI
185. A High-Performance Liquid Chromatography Radio Method for Determination of l-Ascorbic Acid and Guanosine 5′-Diphosphate-l-Galactose, Key Metabolites of the Plant Vitamin C Pathway

Beata A. Wolucka, Mark W. Davey, Wout Boerjan

(2001/07) - Analytical Biochemistry

DOI
184. Elucidation of new structures in lignins of CAD- and COMT-deficient plants by NMR

John Ralph, Catherine Lapierre, Jane M Marita, Hoon Kim, Fachuang Lu, Ronald D Hatfield, Sally Ralph, Clint Chapple, Rochus Franke, Matt R Hemm, Jan Van Doorsselaere, Ronald R Sederoff, David M O’Malley, Jay T Scott, John J MacKay, Nabila Yahiaoui, Alain-M Boudet, Michel Pean, Gilles Pilate, Lise Jouanin, Wout Boerjan

(2001/07) - Phytochemistry

DOI
183. Functional analysis of cyclin-dependent kinase inhibitors of Arabidopsis.

De Veylder L, Beeckman T, Beemster GT, Krols L, Terras F, Landrieu I, van der Schueren E, Maes S, Naudts M, Inzé D

(2001/07) - The Plant Cell

DOI
182. Genome duplication, divergent resolution and speciation

John S. Taylor, Yves Van de Peer, Axel Meyer

(2001/06) - Trends in Genetics

DOI
181. Identification of novel cyclin-dependent kinases interacting with the CKS1 protein of Arabidopsis

Boudolf V, Rombauts S, Naudts M, Inzé D, De Veylder L

(2001/06) - Journal of Experimental Botany

DOI
180. Dense Genetic Linkage Maps of Three Populus Species (Populus deltoides, P. nigra and P. trichocarpa) Based on AFLP and Microsatellite Markers

Maria-Teresa Cervera, Véronique Storme, Bart Ivens, Jaqueline Gusmão, Ben H Liu, Vanessa Hostyn, Jos Van Slycken, Marc Van Montagu, Wout Boerjan

(2001/06) - Genetics

DOI
179. The protein kinase Gcn2p mediates sodium toxicity in yeast.

Goossens A, Dever TE, Pascual-Ahuir A, Serrano R

(2001/06) - The Journal of Biological Chemistry

DOI
178. Auxin transport promotes Arabidopsis lateral root initiation.

Casimiro I, Marchant A, Bhalerao RP, Beeckman T, Dhooge S, Swarup R, Graham N, Inzé D, Sandberg G, Casero PJ, Bennett M

(2001/04) - The Plant Cell

DOI
177. CKS1At overexpression in Arabidopsis thaliana inhibits growth by reducing meristem size and inhibiting cell cycle progression

De Veylder L, Beemster GTS, Beeckman T, Inzé D

(2001/03) - Plant Journal

DOI
176. The peri-cell-cycle in Arabidopsis

T. Beeckman, S. Burssens, D. Inze

(2001/03) - Journal of Experimental Botany

DOI
175. CKS1At overexpression in Arabidopsis thaliana inhibits growth by reducing meristem size and inhibiting cell-cycle progression.

De Veylder L, Beemster GT, Beeckman T, Inzé D

(2001/03) - The Plant Journal

DOI
174. NMR Evidence for Benzodioxane Structures Resulting from Incorporation of 5-Hydroxyconiferyl Alcohol into Lignins ofO-Methyltransferase-Deficient Poplars

John Ralph, Catherine Lapierre, Fachuang Lu, Jane M. Marita, Gilles Pilate, Jan Van Doorsselaere, Wout Boerjan, Lise Jouanin

(2001/01) - Journal of Agricultural and Food Chemistry

DOI
173. Advances in the improvement of forest trees through biotechnology

Van Raemdonck D, Jaziri M, Boerjan W, Baucher M

(2001/01) - Belgian Journal of Botany

No link available
172. Molecular characterisation of Arabidopsis lines tagged with a promoterless gus gene.

Karimi M, Van Poucke K, Beeckman T, Van Montagu M, Gheysen G

(2001/01) - Mededelingen (Rijksuniversiteit te Gent. Fakulteit van de Landbouwkundige en Toegepaste Biologische Wetenschappen)

No link available
171. The European large subunit ribosomal RNA database

Wuyts, J., De Rijk, P., Van De Peer, Y., Winkelmans, T., De Wachter, R.

(2001) - Nucleic Acids Research

DOI
170. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA

WUYTS, J, VAN DE PEER, Y, WACHTER, RD

(2001) - NUCLEIC ACIDS RESEARCH

No link available
169. Catalase deficient tobacco plants: tools for in planta studies on the role of hydrogen peroxide

Dat JF, Inzé D, Van Breusegem F

(2001) - Redox Report

DOI
168. Biotechnology in trees: Towards improved paper pulping by lignin engineering

Cuiying Chen, Marie Baucher, Jørgen Holst Christensen, Wout Boerjan

(2001) - Euphytica

DOI
167. Unravelling cell wall formation in the woody dicot stem

Ewa J. Mellerowicz, Marie Baucher, Björn Sundberg, Wout Boerjan

(2001) - Plant Molecular Biology

DOI
166. Constitutive Overexpression of Cystathionine γ-Synthase in Arabidopsis Leads to Accumulation of Soluble Methionine and S-Methylmethionine

Jørgen Holst Christensen, Serge Overney, Antje Rohde, Wilson Ardiles Diaz, Guy Bauw, Patrice Simon, Marc Van Montagu, Wout Boerjan

(2001) - Plant Molecular Biology

DOI
165. ABA plays a central role in mediating them regulatory effects of nitrate on root branching in Arabidopsis

Signora, L, De Smet, I, Foyer, CH, Zhang, HM

(2001) - Plant Journal

DOI
164. The drl1 gene, a signal identified by transposon tagging is important for leaf growth.

Nelissen H, Clarke J, Vanderhaeghen R, Van Lijsebettens M

(2001) -

No link available
163. An Updated and Comprehensive rRNA Phylogeny of (Crown) Eukaryotes Based on Rate-Calibrated Evolutionary Distances

Yves Van de Peer, Sandra L. Baldaufrid="*", W. Ford Doolittle, Axel Meyerid

(2000/12) - Journal of Molecular Evolution

DOI
162. Characterization of two distinct DP related genes from Arabidopsis thaliana

Magyar Z, Atanassova A, De Veylder L, Rombauts S, Inzé D

(2000/12) - FEBS Letters

DOI
161. Modifications in Lignin and Accumulation of Phenolic Glucosides in Poplar Xylem upon Down-regulation of Caffeoyl-Coenzyme A O-Methyltransferase, an Enzyme Involved in Lignin Biosynthesis

Hugo Meyermans, Kris Morreel, Catherine Lapierre, Brigitte Pollet, André De Bruyn, Roger Busson, Piet Herdewijn, Bart Devreese, Jozef Van Beeumen, Jane M. Marita, John Ralph, Cuiying Chen, Bart Burggraeve, Marc Van Montagu, Eric Messens, Wout Boerjan

(2000/11) - Journal of Biological Chemistry

DOI
160. Increased leakiness of the tetracycline inducible Triple Op promoter in dividing cells renders it unsuitable for high inducible levels of a dominant negative CDC2aAt gene

De Veylder L, Beeckman T, Van Montagu M, Inzé D

(2000/10) - Journal of Experimental Botany

DOI
159. Improved AFLP analysis of tree species

Cervera MT, Remington D, Frigerio, J-M, Storme V, Ivens B, Wout Boerjan, Plomion C

(2000/10) - Canadian Journal of Forest Research

No link available
158. Regulation of yeast H(+)-ATPase by protein kinases belonging to a family dedicated to activation of plasma membrane transporters.

Goossens A, de La Fuente N, Forment J, Serrano R, Portillo F

(2000/10) - Molecular and Cellular Biology

DOI
157. Increased leakiness of the tetracycline‐inducible Triple‐Op promoter in dividing cells renders it unsuitable for high inducible levels of a dominant negative CDC2aAt gene

Lieven De Veylder, Tom Beeckman, Marc Van Montagu, Dirk Inzé

(2000/10) - Journal of Experimental Botany

DOI
156. Expression of cell cycle regulatory genes and morphological alterations in response to salt stress in Arabidopsis thaliana

Sylvia Burssens, Kristiina Himanen, Brigitte van de Cotte, Tom Beeckman, Marc Van Montagu, Dirk Inzé, Nathalie Verbruggen

(2000/10) - Planta

DOI
155. Developmental expression of the Arabidopsis thaliana CycA2;1 gene.

Burssens S, de Almeida Engler J, Beeckman T, Richard C, Shaul O, Ferreira P, Van Montagu M, Inzé D

(2000/10) - Planta

DOI
154. Phenylcoumaran benzylic ether reductase, a prominent poplar xylem protein, is strongly associated with phenylpropanoid biosynthesis in lignifying cells

Kristine Vander Mijnsbrugge, Hans Beeckman, Riet De Rycke, Marc Van Montagu, Gilbert Engler, Wout Boerjan

(2000/09) - Planta

DOI
153. Characterization of cis‐elements required for vascular expression of the Cinnamoyl CoA Reductase gene and for protein–DNA complex formation

Eric Lacombe, Jan Van Doorsselaere, Wout Boerjan, Alain M. Boudet, Jacqueline Grima‐Pettenati

(2000/09) - The Plant Journal

DOI
152. Different expression of an S-adenosylmethionine synthetase gene in transgenic tobacco callus modifies alkaloid biosynthesis

Lassaad Belbahri, Laurence Chevalier, Lamine Bensaddek, Françoise Gillet, Marc-André Fliniaux, Wout Boerjan, Dirk Inzé, Daniel Thomas, Brigitte Thomasset

(2000/07) - Biotechnology and Bioengineering

3.0.co;2-j" class="button" target="_blank">DOI
151. Cell-Specific and Conditional Expression of Caffeoyl-Coenzyme A-3-O-Methyltransferase in Poplar

Cuiying Chen, Hugo Meyermans, Bart Burggraeve, Riet M. De Rycke, Kentaro Inoue, Vera De Vleesschauwer, Marijke Steenackers, Marc C. Van Montagu, Gilbert J. Engler, Wout A. Boerjan

(2000/07) - Plant Physiology

DOI
150. Analysis of bruchid resistance in the wild common bean accession G02771: no evidence for insecticidal activity of arcelin 5.

Goossens A, Quintero C, Dillen W, De Rycke R, Valor JF, De Clercq J, Van Montagu M, Cardona C, Angenon G

(2000/07) - Journal of Experimental Botany

DOI
149. Dual action of the active oxygen species during plant stress responses

Dat J, Vandenabeele S, Vranová E, Van Montagu M, Inzé D, Van Breusegem F

(2000/05) - Cellular and Molecular Life Sciences

DOI
148. The Arabidopsis thaliana PIN1At gene encodes a single domain phosphorylation dependent peptidyl prolyl cis/trans isomerase

Landrieu I, De Veylder L, Fruchart JS, Odaert B, Casteels P, Portetelle D, Van Montagu M, Inzé D, Lippens G

(2000/04) - Journal of Biological Chemistry

DOI
147. Wood formation in poplar: identification, characterization, and seasonal variation of xylem proteins

Kristine Vander Mijnsbrugge, Hugo Meyermans, Marc Van Montagu, Guy Bauw, Wout Boerjan

(2000/03) - Planta

DOI
146. Quantitative Trait Loci and Candidate Gene Mapping of Bud Set and Bud Flush in Populus

Barbara E Frewen, Tony H H Chen, Glenn T Howe, Joel Davis, Antje Rohde, Wout Boerjan, H D Bradshaw

(2000/02) - Genetics

DOI
145. ABI3 Affects Plastid Differentiation in Dark-Grown Arabidopsis Seedlings

Antje Rohde, Riet De Rycke, Tom Beeckman, Gilbert Engler, Marc Van Montagu, Wout Boerjan

(2000/01) - The Plant Cell

DOI
144. ABI3 Affects Plastid Differentiation in Dark-Grown Arabidopsis Seedlings

Antje Rohde, Riet De Rycke, Tom Beeckman, Gilbert Engler, Marc Van Montagu, Wout Boerjan

(2000/01) - The Plant Cell

DOI
143. Embedding thin plant specimens for oriented sectioning.

Beeckman T, Viane R

(2000/01) - Biotechnic & Histochemistry

DOI
142. Comparative analysis of more than 3000 sequences reveals the existence of two pseudoknots in area V4 of eukaryotic small subunit ribosomal RNA

Wuyts, J., De Rijk, P., Van De Peer, Y., Pison, G., Rousseeuw, P., De Wachter, R.

(2000) - Nucleic Acids Research

DOI
141. How molecules evolve in eubacteria [3]

Lockhart, P.J., Huson, D., Maier, U., Fraunholz, M.J., Van De Peer, Y., Barbrook, A.C., Howe, C.J., Steel, M.A.

(2000) - Molecular Biology and Evolution

DOI
140. Microsporidia: Accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi

Van De Peer, Y., Ben Ali, A., Meyer, A.

(2000) - Gene

DOI
139. The European Large Subunit Ribosomal RNA database

De Rijk, P., Wuyts, J., Van De Peer, Y., Winkelmans, T., De Wachter, R.

(2000) - Nucleic Acids Research

DOI
138. The European Small Subunit Ribosomal RNA database

Van De Peer, Y., De Rijk, P., Wuyts, J., Winkelmans, T., De Wachter, R.

(2000) - Nucleic Acids Research

DOI
137. Forest biotechnology makes its position known

Steven Strauss, Wout Boerjan, John Cairney, Malcolm Campbell, Jeffrey Dean, David Ellis, Lise Jouanin, Björn Sundberg

(1999/12) - Nature Biotechnology

DOI
136. Genetic Engineering of Poplar Lignins: Impact of Lignin Alteration on Kraft Pulping Performances

C. Lapierre, B. Pollet, M. Petit-Conil, G. Pilate, C. Leplé, W. Boerjan, L. Jouanin

(1999/11) - ACS Symposium Series

DOI
135. The Electronic Plant Gene Register: Characterization of a phenylcoumaran benzylic ether reductase gene (Accession No. AJ132262) in Populus trichocarpa (PGR99 124)

Vander Mijnsbrugge K, Van Doorsselaere J, Ardiles Diaz W, Van Montagu M, Boerjan W

(1999/09) - Plant Physiology

DOI
134. The arcelin-5 gene of Phaseolus vulgaris directs high seed-specific expression in transgenic Phaseolus acutifolius and Arabidopsis plants.

Goossens A, Dillen W, De Clercq J, Van Montagu M, Angenon G

(1999/08) - Plant Physiology

DOI
133. Construction of a variability map for eukaryotic large subunit ribosomal RNA

Ben Ali A., Wuyts J., De Wachter R., Meyer A., Van de Peer Y.

(1999/07) - Nucleic Acids Research

DOI
132. Chalcone reductase-homologous transcripts accumulate during development of stem-borne nodules on the tropical legume Sesbania rostrata.

Goormachtig S, Lievens S, Herman S, Van Montagu M, Holsters M

(1999/07) -

DOI
131. Co-introduction of an antisense gene for an endogenous seed storage protein can increase expression of a transgene in Arabidopsis thaliana seeds.

Goossens A, Van Montagu M, Angenon G

(1999/07) - FEBS Letters

DOI
130. A new D type cyclin of Arabidopsis thaliana expressed during lateral root primordia formation

De Veylder L, de Almeida Engler J, Burssens S, Manevski A, Lescure B, Van Montagu M, Engler G, Inzé D

(1999/06) - Planta

DOI
129. Recombinant production of the p10CKS1At protein from Arabidopsis thaliana and 13C and 15N double isotopic enrichment for NMR studies

Landrieu I, Casteels P, Odaert B, De Veylder L, Portetelle D, Lippens G, Van Montagu M, Inzé D

(1999/06) - Protein Expression and Purification

DOI
128. The Electronic Plant Gene Register

Chen C, Ardiles Diaz W, Van Montagu M, Boerjan W

(1999/06) - Plant Physiology

DOI
127. Overproduction of Arabidopsis thaliana FeSOD confers oxidative stress tolerance to transgenic maize

Van Breusegem F, Slooten L, Stassart J-M, Moens T, Botterman J, Van Montagu M, Inzé D

(1999/05) - Plant & Cell Physiology

DOI
126. Cyclin dependent kinases and cell division in higher plants - the nexus

Mironov V, De Veylder L, Van Montagu M, Inzé D

(1999/04) - Plant Cell

DOI
125. Tolerance to low temperature and paraquat mediated oxidative stress in two maize genotypes

Iannelli MA, Van Breusegem F, Van Montagu M, Inzé D, Massacci A

(1999/04) - Journal of Experimental Botany

DOI
124. Mutational analysis of two Arabidopsis thaliana cyclin dependent kinases in fission yeast

Porceddu A, De Veylder L, Hayles J, Van Montagu M, Inzé D, Mironov V

(1999/03) - FEBS Letters

DOI
123. The ABSCISIC ACID‐INSENSITIVE 3 (ABI3) gene is expressed during vegetative quiescence processes in Arabidopsis

A. ROHDE, M. VAN MONTAGU, W. BOERJAN

(1999/03) - Plant, Cell & Environment

DOI
122. Evolution of Plant Defense Mechanisms

David R. Gang, Hiroyuki Kasahara, Zhi-Qiang Xia, Kristine Vander Mijnsbrugge, Guy Bauw, Wout Boerjan, Marc Van Montagu, Laurence B. Davin, Norman G. Lewis

(1999/03) - Journal of Biological Chemistry

DOI
121. Expression of CKS1At expression in Arabidopsis thaliana indicates a role for the protein in both the mitotic and the endoreduplication cycle

Jacqmard A, De Veylder L, Segers G, de Almeida Engler J, Bernier G, Van Montagu M, Inzé D

(1999/02) - Planta

DOI
120. Effects of overproduction of tobacco MnSOD in maize chloroplasts on foliar tolerance to cold and oxidative stress

Van Breusegem F, Slooten L, Stassart JM, Botterman J, Moens T, Van Montagu M, Inzé D

(1999/01) - Journal of Experimental Botany

DOI
119. Structural Alterations of Lignins in Transgenic Poplars with Depressed Cinnamyl Alcohol Dehydrogenase or Caffeic AcidO-Methyltransferase Activity Have an Opposite Impact on the Efficiency of Industrial Kraft Pulping1

Catherine Lapierre, Brigitte Pollet, Michel Petit-Conil, Gabriel Toval, Javier Romero, Gilles Pilate, Jean-Charles Leplé, Wout Boerjan, Valérie Ferret, Véronique De Nadai, Lise Jouanin

(1999/01) - Plant Physiology

DOI
118. carpel, a New Arabidopsis Epi-Mutant of the SUPERMAN Gene: Phenotypic Analysis and DNA Methylation Status

A. Rohde, C. Grunau, D. L. Beck, M. V. Montagu, A. Rosenthal, W. Boerjan

(1999/01) - Plant and Cell Physiology

DOI
117. Phylogenetic analysis of the SSU rRNA from members of the Chrysophyceae

ANDERSEN, RA, VAN DE PEER, Y, POTTER, D, SEXTON, JP, KAWACHI, M, LAJEUNESSE, T

(1999) - PROTIST

No link available
116. Molecular evolution and the incorporation of site-to-site rate variation in distance tree construction methods

Van De Peer, Y.

(1999) - Belgian Journal of Zoology

No link available
115. ForCon: a software tool for the conversion of sequence alignments

Raes J, Yves Van de Peer

(1999) - Embnet.news

No link available
114. The taxonomic position of Chlamydomyxa labyrinthuloides

Wenderoth, K., Marquardt, J., Fraunholz, M., Van De Peer, Y., Wastl, J., Maier, U.-G.

(1999) - European Journal of Phycology

DOI
113. Metazoan Relationships on the Basis of 18S rRNA Sequences: A Few Years Later…

BIRGITTA M. H. WINNEPENNINCKX, YVES VAN DE PEER, THIERRY BACKELJAU

(1998/12) - American Zoologist

DOI
112. Processing of a chimeric protein in chloroplasts is different in transgenic maize and tobacco plants

Van Breusegem F, Kushnir S, Slooten L, Bauw G, Botterman J, Van Montagu M, Inzé D

(1998/10) - Plant Molecular Biology

DOI
111. Gene discovery in the wood-forming tissues of poplar: Analysis of 5,692 expressed sequence tags

Fredrik Sterky, Sharon Regan, Jan Karlsson, Magnus Hertzberg, Antje Rohde, Anders Holmberg, Bahram Amini, Rupali Bhalerao, Magnus Larsson, Raimundo Villarroel, Marc Van Montagu, Göran Sandberg, Olof Olsson, Tuula T. Teeri, Wout Boerjan, Petter Gustafsson, Mathias Uhlén, Björn Sundberg, Joakim Lundeberg

(1998/10) - Proceedings of the National Academy of Sciences

DOI
110. Ethylene-mediated phenotypic plasticity in root nodule development on Sesbania rostrata.

Fernandez-Lopez M, Goormachtig S, Gao M, D'Haeze W, Van Montagu M, Holsters M

(1998/10) -

DOI
109. Purification and Characterization of Peroxidases Correlated with Lignification in Poplar Xylem1

Jørgen Holst Christensen, Guy Bauw, Karen Gjesing Welinder, Marc Van Montagu, Wout Boerjan

(1998/09) - Plant Physiology

DOI
108. The Electronic Plant Gene Register: A cDNA encoding cinnamoyl CoA reductase from Populus trichocarpa (Accession No. AJ224986) (PGR 98 121)

Leplé, J-C, Grima Pettenati J, Van Montagu M, Boerjan W

(1998/07) - Plant Physiology

DOI
107. Isolation and expression analysis of an ABSCISIC ACID-INSENSITIVE 3 (AB13) homologue from Populus trichocarpa

A Rohde, Ardiles Diaz W, Van Montagu M, Boerjan W

(1998/06) - Journal of Experimental Botany

DOI
106. The Electronic Plant Gene Register: A gene encoding caffeoyl coenzyme A 3 O methyltransferase (CCoAOMT) from Populus trichocarpa (Accession No. AJ223621) (PGR98 104)

Chen C, Meyermans H, Van Doorsselaere J, Van Montagu M, Boerjan W

(1998/06) - Plant Physiology

DOI
105. Srchi13, a novel early nodulin from Sesbania rostrata, is related to acidic class III chitinases.

Goormachtig S, Lievens S, Van de Velde W, Van Montagu M, Holsters M

(1998/06) -

DOI
104. Accumulation Pattern of IgG Antibodies and Fab Fragments in Transgenic Arabidopsis thaliana Plants

C. D. Wilde, R. D. Rycke, T. Beeckman, M. D. Neve, M. V. Montagu, G. Engler, A. Depicker

(1998/06) - Plant and Cell Physiology

DOI
103. Patterns of ENOD40 gene expression in stem-borne nodules of Sesbania rostrata.

Corich V, Goormachtig S, Lievens S, Van Montagu M, Holsters M

(1998/05) -

DOI
102. Biosynthesis and Genetic Engineering of Lignin

Marie Baucher, Bernard Monties, Marc Van Montagu, Wout Boerjan

(1998/03) - Critical Reviews in Plant Sciences

DOI
101. The Early Nodulin Gene ENOD2 Shows Different Expression Patterns DuringSesbania rostrataStem Nodule Development

Sofie Goormachtig, Marc Van Montagu, Marcelle Holsters

(1998/03) - Molecular Plant-Microbe Interactions®

DOI
100. Applications of molecular genetics for biosynthesis of novel lignins

Marie Baucher, Jørgen Holst Christensen, Hugo Meyermans, Cuiying Chen, Jan Van Doorsselaere, Jean-Charles Leplé, Gilles Pilate, Michel Petit-Conil, Lise Jouanin, Brigitte Chabbert, Bernard Monties, Marc Van Montagu, Wout Boerjan

(1998/01) - Polymer Degradation and Stability

DOI
99. The symbiotic interaction between Azorhizobium caulinodans and Sesbania rostrata molecular cross-talk in a beneficial plant-bacterium interaction.

Goormachtig S, Mergaert P, Van Montagu M, Holsters M

(1998/01) - Subcellular Biochemistry

DOI
98. Divergent members of the bacterial division Verrucomicrobiales in a temperate freshwater lake

Zwart, G., Huismans, R., Van Agterveld, M.P., Van de Peer, Y., De Rijk, P., Eenhoorn, H., Muyzer, G., Van Hannen, E.J., Gons, H.J., Laanbroek, H.J.

(1998) - FEMS Microbiology Ecology

DOI
97. Pelistega europaea gen. nov., sp. nov., a bacterium associated with respiratory disease in pigeons: Taxonomic structure and phylogenetic allocation

Vandamme, P., Segers, P., Ryll, M., Hommez, J., Vancanneyt, M., Coopman, R., De Baere, R., Van De Peer, Y., Kersters, K., De Wachter, R., Hinz, K.H.

(1998) - International Journal of Systematic Bacteriology

DOI
96. Database on the structure of small ribosomal subunit RNA

Van de Peer, Y., Caers, A., De Rijk, P., De Wachter, R.

(1998) - Nucleic Acids Research

DOI
95. Database on the structure of large ribosomal subunit RNA

De Rijk, P., Caers, A., Van de Peer, Y., De Wachter, R.

(1998) - Nucleic Acids Research

DOI
94. Engineering stress tolerance in maize

Van Breusegem, F., Van Montagu, M., Inzé, D.

(1998) - Outlook on Agriculture

DOI
93. Tree breeding in the molecular biology age

Wout Boerjan, Van Montagu M

(1998) - Agro FOOD Industry Hi Tech

No link available
92. Identification of proteins interacting with the Arabidopsis Cdc2aAt protein

De Veylder L, Segers G, Glab N, Van Montagu M, Inzé D

(1997/12) - Journal of Experimental Botany

DOI
91. The Arabidopsis Cks1At protein binds to the cyclin dependent kinases Cdc2aAt and Cdc2bAt

De Veylder L, Segers G, Glab N, Casteels P, Van Montagu M, Inzé D

(1997/08) - FEBS Letters

DOI
90. Herbicide safener inducible gene expression system in Arabidopsis thaliana

De Veylder L, Van Montagu M, Inzé D

(1997/05) - Plant & Cell Physiology

DOI
89. Expression of cell cycle genes during Sesbania rostrata stem nodule development.

Goormachtig S, Alves-Ferreira M, Van Montagu M, Engler G, Holsters M

(1997/04) -

DOI
88. Factors regulating the expression of cell cycle genes in individual buds ofPopulus

Antje Rohde, Marc Van Montagu, Dirk Inzé, Wout Boerjan

(1997/03) - Planta

DOI
87. Agrobacterium-mediated transformation of Phaseolus acutifolius A. Gray

W. Dillen, J. De Clercq, A. Goossens, M. Van Montagu, G. Angenon

(1997/02) - Theoretical and Applied Genetics

DOI
86. Evolutionary relationships among the eukaryotic crown taxa taking into account site-to-site rate variation in 18S rRNA

Van De Peer, Y., De Wachter, R.

(1997) - Journal of Molecular Evolution

DOI
85. Database on the structure of large ribosomal subunit RNA

De Rijk, P., Van De Peer, Y., De Wachter, R.

(1997) - Nucleic Acids Research

DOI
84. Secondary structure of the large ribosomal subunit RNA of the moss Funaria hygrometrica

Capesius, I., Van de Peer, Y.

(1997) - Journal of Plant Physiology

DOI
83. Molecular phylogeny of the stress-70 protein family with reference to algal relationships

Rensing, S., Obrdlik, P., Rober-Kleber, N., Müller, S., Hofmann, C., Maier, U.-G., Van De Peer, Y.

(1997) - European Journal of Phycology

DOI
82. Construction of evolutionary distance trees with treecon for windows: Accounting for variation in nucieotide substitution rate among sites

Van de Peer, Y., De Wachter, R.

(1997) - Bioinformatics

DOI
81. Database on the structure of small ribosomal subunit RNA

Van De Peer, Y., Jansen, J., De Rijk, P., De Wachter, R.

(1997) - Nucleic Acids Research

DOI
80. Phylogenetic analysis of a fish tapewonn, Proteocephalus exiguus, based on the small subunit rRNA gene

Král'ová, I., Van De Peer, Y., Jirků, M., Van Ranst, M., Scholz, T., Lukeš, J.

(1997) - Molecular and Biochemical Parasitology

DOI
79. Red Xylem and Higher Lignin Extractability by Down-Regulating a Cinnamyl Alcohol Dehydrogenase in Poplar

M. Baucher, B. Chabbert, G. Pilate, J. Van Doorsselaere, M. T. Tollier, M. Petit-Conil, D. Cornu, B. Monties, M. Van Montagu, D. Inze, L. Jouanin, W. Boerjan

(1996/12) - Plant Physiology

DOI
78. Tissue-Specific Expression Conferred by the S-Adenosyl-L-Methionine Synthetase Promoter of Arabidopsis thaliana in Transgenic Poplar

K. V. Mijnsbrugge, M. Van Montagu, D. Inze, W. Boerjan

(1996/12) - Plant and Cell Physiology

DOI
77. Crystal structure of arcelin-5, a lectin-like defense protein from Phaseolus vulgaris.

Hamelryck TW, Poortmans F, Goossens A, Angenon G, Van Montagu M, Wyns L, Loris R

(1996/12) - The Journal of Biological Chemistry

DOI
76. Application of AFLP™-based molecular markers to breeding of Populus spp.

María Teresa Cervera, Jaqueline Gusmão, Marijke Steenackers, Ann Van Gysel, Marc Van Montagu, Wout Boerjan

(1996/10) - Plant Growth Regulation

DOI
75. Identification of AFLP molecular markers for resistance against Melampsora larici-populina in Populus

M. T. Cervera, J. Gusmão, M. Steenackers, J. Peleman, V. Storme, A. Vanden Broeck, M. Van Montagu, W. Boerjan

(1996/10) - Theoretical and Applied Genetics

DOI
74. Substitution rate calibration of small subunit ribosomal RNA identifies chlorarachniophyte endosymbionts as remnants of green algae.

Y Van de Peer, S A Rensing, U G Maier, R De Wachter

(1996/07) - Proceedings of the National Academy of Sciences

DOI
73. The evolution of stramenopiles and alveolates as derived by “substitution rate calibration» of small ribosomal subunit RNA

Yves Van de Peer, Gert Van der Auwera, Rupert De Wachter

(1996/02) - Journal of Molecular Evolution

DOI
72. Database on the structure of small ribosomal subunit RNA

Y Van de Peer

(1996/01) - Nucleic Acids Research

DOI
71. Substitution rate calibration of nucleotide sequence alignments and application to phylogenetic tree construction

VANDEPEER, Y, DEWACHTER, R

(1996) - ARCHIVES OF PHYSIOLOGY AND BIOCHEMISTRY

No link available
70. The determination and comparison of the 16S rRNA gene sequences of species of the genus Pseudomonas (sensu stricto) and estimation of the natural intrageneric relationships

Moore, E.R.B., Mau, M., Arnscheidt, A., Böttger, E.C., Hutson, R.A., Collins, M.D., Van De Peer, Y., De Wachter, R., Timmis, K.N.

(1996) - Systematic and Applied Microbiology

DOI
69. Phylogenetic analysis of the env gene of HIV-1 isolates taking into account individual nucleotide substitution rates

Van De Peer, Y., Janssens, W., Heyndrickx, L., Fransen, K., Van Der Groen, G., De Wachter, R.

(1996) - AIDS

DOI
68. Database on the structure of large ribosomal subunit RNA

De Rijk, P., Van de Peer, Y., De Wachter, R.

(1996) - Nucleic Acids Research

DOI
67. Compilation of pseudomonad sequences present in a database on the structure of ribosomal RNA

Van De Peer, Y., Vancanneyt, M., De Wachter, R.

(1996) - Systematic and Applied Microbiology

DOI
66. Globins in nonvertebrate species: Dispersal by horizontal gene transfer and evolution of the structure-function relationships

Moens, L., Vanfleteren, J., Van De Peer, Y., Peeters, K., Kapp, O., Czeluzniak, J., Goodman, M., Blaxter, M., Vinogradov, S.

(1996) - Molecular Biology and Evolution

DOI
65. 18S ribosomal RNA genes of insects: Primary structure of the genes and molecular phylogeny of the holometabola

Chalwatzis, N., Hauf, J., Van De Peer, Y., Kinzelbach, R., Zimmermann, F.K.

(1996) - Annals of the Entomological Society of America

DOI
64. A quantitative map of nucleotide substitution rates in bacterial rRNA

Van de Peer, Y., Chapelle, S., De Wachter, R.

(1996) - Nucleic Acids Research

DOI
63. Transgenic Arabidopsis Tester Lines With Dominant Marker Genes

Mieke Van Lijsebettens, X. Wang, Gerda Cnops, W. Boerjan, Thierry Desnos, Herman Höfte, M. Van Montagu

(1996) - Molecular & General Genetics

DOI
62. A novel lignin in poplar trees with a reduced caffeic acid/5‐hydroxyferulic acid O‐methyltransferase activity

Jan Van Doorsselaere, Marie Baucher, Emmanuelle Chognot, Brigitte Chabbert, Marie‐Thérèse Tollier, Michel Petit‐Conil, Jean‐Charles Leplé, Gilles Pilate, Daniel Cornu, Bernard Monties, Marc Van Montagu, Dirk Inzé, Wout Boerjan, Lise Jouanin

(1995/12) - The Plant Journal

DOI
61. The Electronic Plant Gene Register

No contributors listed

(1995/10) - Plant Physiology

DOI
60. Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction.

W Boerjan, M T Cervera, M Delarue, T Beeckman, W Dewitte, C Bellini, M Caboche, H Van Onckelen, M Van Montagu, D Inzé

(1995/09) - The Plant Cell

DOI
59. Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction.

W Boerjan, M T Cervera, M Delarue, T Beeckman, W Dewitte, C Bellini, M Caboche, H Van Onckelen, M Van Montagu, D Inzé

(1995/09) - The Plant Cell

DOI
58. The phylogeny of the Hyphochytriomycota as deduced from ribosomal RNA sequences of Hyphochytrium catenoides.

Van der Auwera G, De Baere R, Van de Peer Y, De Rijk P, Van den Broeck I, De Wachter R

(1995/07) - Molecular Biology and Evolution

DOI
57. Ascorbate peroxidase cDNA from maize.

Van Breusegem F, Villarroel R, Van Montagu M, Inzé D

(1995/02) - Plant Physiology

DOI
56. Genomic Nucleotide Sequence of an Arabidopsis thaliana Gene Encoding a Cinnamyl Alcohol Dehydrogenase

M. Baucher, J. Van Doorsselaere, J. Gielen, M. Van Montagu, D. Inze, W. Boerjan

(1995/01) - Plant Physiology

DOI
55. CARD - A DRAWING TOOL FOR RNA SECONDARY STRUCTURE MODELS

WINNEPENNINCKX, B, VANDEPEER, Y, BACKELJAU, T, DEWACHTER, R

(1995) - BIOTECHNIQUES

No link available
54. Investigation of fungal phylogeny on the basis of small ribosomal subunit RNA sequences

Yves Van De Peer, Rupert De Wachter

(1995) - Molecular Microbial Ecology Manual

DOI
53. Phylogenetic analysis of ten black yeast species using nuclear small subunit rRNA gene sequences

Haase, G., Sonntag, L., van de Peer, Y., Uijthof, J.M.J., Podbielski, A., Melzer-Krick, B.

(1995) - Antonie van Leeuwenhoek

DOI
52. AN EARLY ORIGIN OF PLASTIDS WITHIN THE CYANOBACTERIAL DIVERGENCE IS SUGGESTED BY EVOLUTIONARY TREES BASED ON COMPLETE 16S RIBOSOMAL-RNA SEQUENCES

NELISSEN, B, VANDEPEER, Y, WILMOTTE, A, DEWACHTER, R

(1995) - MOLECULAR BIOLOGY AND EVOLUTION

No link available
51. Evolution according to large tribosomal subunit RNA

De Rijk, P., Van de Peer, Y., Van den Broeck, I., De Wachter, R.

(1995) - Journal of Molecular Evolution

DOI
50. Use of Differential Display to Identify NovelSesbania rostrataGenes Enhanced byAzorhizobium cauiinodansInfection

Sofie Goormachtig, M Valerio-Lepiniec, K Szczyglowski, M Van Montagu, M Holsters, F J de Bruijn

(1995) - Molecular Plant-Microbe Interactions

DOI
49. Isolation and characterisation of arcelin-5 proteins and cDNAs.

Goossens A, Geremia R, Bauw G, Van Montagu M, Angenon G

(1994/11) - European Journal of Biochemistry

DOI
48. Distinct phenotypes generated by overexpression and suppression of S-adenosyl-L-methionine synthetase reveal developmental patterns of gene silencing in tobacco.

W Boerjan, G Bauw, M Van Montagu, D Inzé

(1994/10) - The Plant Cell

DOI
47. Characterization of a S adenosylmethionine synthetase gene in rice

Van Breusegem F, Dekeyser R, Gielen J, Van Montagu M, Caplan A

(1994/08) - Plant Physiology

DOI
46. An easy technique for the clearing of histochemically stained plant tissue

Tom Beeckman, Gilbert Engler

(1994/03) - Plant Molecular Biology Reporter

DOI
45. Database on the structure of small ribosomal subunit RNA

Yves Van de Peer, Van den Broeck I, De Rijk P, De Wachter R

(1994) - Nucleic Acids Research

DOI
44. Database on the structure of large ribosomal subunit RNA

Rijk, P.D., De Peer, Y.V., Chapelle, S., Wachter, R.D.

(1994) - Nucleic Acids Research

DOI
43. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment

Yves Van de Peer, Rupert De Wachter

(1994) - Bioinformatics

DOI
42. Molecular phylogeny of part of the env gene of HIV-1 strains isolated in Cote d'Ivoire

Janssens, W., Heyndrickx, L., Van de Peer, Y., Bouckaert, A., Fransen, K., Motte, J., Gershy-Damet, G.-M., Peeters, M., Piot, P., Van der Groen, G.

(1994) - AIDS

DOI
41. Molecular Genealogy of Some Nematode Taxa as Based on Cytochrome c and Globin Amino Acid Sequences

Vanfleteren, J.R., Van De Peer, Y., Blaxter, M.L., Tweedie, S.A.R., Trotman, C., Lu, L., Van Hauwaert, M.-L., Moens, L.

(1994) - Molecular Phylogenetics and Evolution

DOI
40. About the Order of Divergence of the Major Bacterial Taxa During Evolution

van de Peer, Y., Neefs, J.-M., de Rijk, P., de Vos, P., de Wachter, R.

(1994) - Systematic and Applied Microbiology

DOI
39. Heat inducible rice hsp82 and hsp70 are not always co regulated

Van Breusegem F, Dekeyser R, Garcia AB, Claes B, Gielen J, Van Montagu M, Caplan AB

(1994) - Planta

DOI
38. Identification of nodSUIJ genes in Nod locus 1 of Azorhizobium caulinodans: evidence that nodS encodes a methyltransferase involved in Nod factor modification.

Geelen D, Mergaert P, Geremia RA, Goormachtig S, Van Montagu M, Holsters M

(1993/07) -

DOI
37. Evolutionary Relationships Among Higher Fungi Inferred from Small Ribosomal Subunit RNA Sequence Analysis

Wilmotte, A., Van De Peer, Y., Goris, A., Chapelle, S., De Baere, R., Nelissen, B., Neefs, J.-M., Hennebert, G.L., De Wachter, R.

(1993) - Systematic and Applied Microbiology

DOI
36. Compilation of small ribosomal subunit RNA structures

Neefs, J.-M., Van De Peer, Y., De Rijk, P., Chapelle, S., de Wachter, R.

(1993) - Nucleic Acids Research

DOI
35. Evolution of eukaryotes as deduced from small ribosomal subunit RNA sequences

van de Peer, Y., Neefs, J.-M., de Rijk, P., de Wachter, R.

(1993) - Biochemical Systematics and Ecology

DOI
34. Treecon: A software package for the construction and drawing of evolutionary trees

De Peer, Y.V., De Wachter, R.

(1993) - Bioinformatics

DOI
33. Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: Calibration of the molecular clock

Van de Peer, Y., Neefs, J.-M., De Rijk, P., De Wachter, R.

(1993) - Journal of Molecular Evolution

DOI
32. Structure of 16S and 23S Ribosomal RNA Genes in Campylobacter Species: Phylogenetic Analysis of the Genus Campylobacter and Presence of Internal Transcribed Spacers

Van Camp, G., Van De Peer, Y., Nicolai, S., Neefs, J.-M., Vandamme, P., De Wachter, R.

(1993) - Systematic and Applied Microbiology

DOI
31. TAXONOMIC STUDY OF MARINE OSCILLATORIACEAN STRAINS (CYANOBACTERIA) WITH NARROW TRICHOMES. II. NUCLEOTIDE SEQUENCE ANALYSIS OF THE 16S RIBOSOMAL RNA¹

Annick Wilmotte, Seán Turner, Yves Van de Peer, Norman R. Pace

(1992/12) - Journal of Phycology

DOI
30. A New Bioassay for Auxins and Cytokinins

Wout Boerjan, Chris Genetello, Marc Van Montagu, Dirk Inzé

(1992/07) - Plant Physiology

DOI
29. Molecular genetic approaches to plant development

Boerjan W, den Boer B, van Montagu M

(1992/03) - The International Journal of Developmental Biology

No link available
28. EVOLUTION OF BASIDIOMYCETOUS YEASTS AS DEDUCED FROM SMALL RIBOSOMAL-SUBUNIT RNA SEQUENCES

VANDEPEER, Y, HENDRIKS, L, GORIS, A, NEEFS, JM, VANCANNEYT, M, KERSTERS, K, BERNY, JF, HENNEBERT, GL, DEWACHTER, R

(1992) - SYSTEMATIC AND APPLIED MICROBIOLOGY

No link available
27. Ribosomal RNA as a tool for studying evolution

Van de Peer Y, Neefs J-M, De Rijk P, De Baere R, Goris A, Hendriks L, De Wachter R

(1992) - Belgian Journal of Botany

No link available
26. The gene coding for small ribosomal subunit RNA in the basidiomycete Ustilago maydis contains a group I intron

Wachter, R.D., Neefs, J.-M., Goris, A., De Peer, Y.V.

(1992) - Nucleic Acids Research

DOI
25. Structure of the small ribosomal subunit RNA of the pulmonate snail, Limicolaria kambeul, and phylogenetic analysis of the Metazoa

Winnepennickx, B., Backeljau, T., van de Peer, Y., De Wachter, R.

(1992) - FEBS Letters

DOI
24. Phylogenetic Relationships among Ascomycetes and Ascomycete-like Yeasts as Deduced from Small Ribosomal Subunit RNA Sequences

Hendriks, L., Goris, A., Van De Peer, Y., Neefs, J.-M., Vancanneyt, M., Kersters, K., Berny, J.-F., Hennebert, G.L., De Wachter, R.

(1992) - Systematic and Applied Microbiology

DOI
23. Compilation of small ribosomal subunit RNA sequences

De Rijk, P., Neefs, J.-M., Van de Peer, Y., De Wachter, R.

(1992) - Nucleic Acids Research

DOI
22. Study of invertebrate and plant globins: templates and evolutionary trees

Winnepenninckx B, Van de Peer Y, Peeters K, De Baere I, Moens L

(1992) - Belgian Journal of Botany

No link available
21. PHYLOGENETIC STUDY OF CYANOBACTERIA ON THE BASIS OF 16S RIBOSOMAL-RNA SEQUENCES

NELISSEN, B, WILMOTTE, A, DEBAERE, R, HAES, F, VANDEPEER, Y, NEEFS, JM, DEWACHTER, R

(1992) - BELGIAN JOURNAL OF BOTANY

No link available
20. Compilation of small ribosomal subunit RNA sequences.

Neefs JM, Van de Peer Y, De Rijk P, Goris A, De Wachter R

(1991/04) - Nucleic Acids Research

DOI
19. A novel seed protein gene from Vicia faba is developmentally regulated in transgenic tobacco and Arabidopsis plants

Helmut BäUmlein, Wout Boerjan, Istvan Nagy, Ronald Bassfüner, Marc Van Montagu, Dirk Inzé, Ulrich Wobus

(1991/03) - Molecular and General Genetics

DOI
18. Upstream sequences regulating legumin gene expression in heterologous transgenic plants

Helmut Bäumlein, Wout Boerjan, Istvan Nagy, Reinhard Panitz, Dirk Inzé, Ulrich Wobus

(1991/01) - Molecular and General Genetics

DOI
17. The evolutionary position of the rhodophyte Porphyra umbilicalis and the basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequences of small ribosomal subunit RNA

Hendriks, L., De Baere, R., Van de Peer, Y., Neefs, J., Goris, A., De Wachter, R.

(1991) - Journal of Molecular Evolution

DOI
16. Phylogenetic analysis of five medically important Candida species as deduced on the basis of small ribosomal subunit RNA sequences

Hendriks, L., Goris, A., Van De Peer, Y., Neefs, J.-M., Vancanneyt, M., Kersters, K., Hennebert, G.L., De Wachter, R.

(1991) - Journal of General Microbiology

DOI
15. Structural interpretation of the amino acid sequence of a second domain from the Artemia covalent polymer globin.

L. Moens, M.L. Van Hauwaert, K. De Smet, K. Ver Donck, Y. Van De Peer, J. Van Beeumen, S. Wodak, P. Alard, C. Trotman

(1990/08) - Journal of Biological Chemistry

DOI
14. Caulerpa (Chlorophyta, Caulerpales) from the Kenyan coast

Eric Coppejans, Tom Beeckman

(1990/02) - Nova Hedwigia

DOI
13. Evolution of green plants and their relationship with other photosynthetic eukaryotes as deduced from 5S ribosomal RNA sequences

van de Peer, Y., de Baere, R., Cauwenberghs, J., de Wachter, R.

(1990) - Plant Systematics and Evolution

DOI
12. 5S rRNA sequences of representatives of the genera Chlorobium, Prosthecochloris, Thermomicrobium, Cytophaga, Flavobacterium, Flexibacter and Saprospira and a discussion of the evolution of eubacteria in general

Van den Eynde, H., Van de Peer, Y., Perry, J., De Wachter, R.

(1990) - Journal of General Microbiology

DOI
11. Compilation of small ribosomal subunit RNA sequences

Neefs, J.-M., Van de Peer, Y., Hendriks, L., De Wachter, R.

(1990) - Nucleic Acids Research

DOI
10. 5S rRNA sequences of myxobacteria and radioresistant bacteria and implications for eubacterial evolution

Van den Eynde, H., De Peer, Y.V., Vandenabeele, H., Van Bogaert, M., De Wachter, R.

(1990) - International Journal of Systematic Bacteriology

DOI
9. The 18S ribosomal RNA sequence of the sea anemone Ammonia sulcata and its evolutionary position among other eukaryotes

Hendriks, L., Van de Peer, Y., Van Herck, M., Neefs, J.-M., De Wachter, R.

(1990) - FEBS Letters

DOI
8. Small ribosomal subunit RNA sequences, evolutionary relationships among different life forms, and mitochondrial origins

Van de Peer, Y., Neefs, J.-M., De Wachter, R.

(1990) - Journal of Molecular Evolution

DOI
7. Strong cellular preference in the expression of a housekeeping gene of Arabidopsis thaliana encoding S-adenosylmethionine synthetase.

J Peleman, W Boerjan, G Engler, J Seurinck, J Botterman, T Alliotte, M Van Montagu, D Inzé

(1989/01) - The Plant Cell

DOI
6. 5S Ribosomal ribonucleic acid sequences in Bacteroides and Fusobacterium: Evolutionary relationships within these genera and among eubacteria in general

Van Den Eynde, H., De Baere, R., Shah, H.N., Gharbia, S.E., Fox, G.E., Michalik, J., Van De Peer, Y., De Wachter, R.

(1989) - International Journal of Systematic Bacteriology

DOI
5. The Nucleotide Sequence of the Small Ribosomal Subunit RNA of the Yeast Candida albicans and the Evolutionary Position of the Fungi among the Eukaryotes

Hendriks, L., Goris, A., Neefs, J.-M., Van De Peer, Y., Hennebert, G., De Wachter, R.

(1989) - Systematic and Applied Microbiology

DOI
4. Inferring Eubacterial Phylogeny from SS Ribosomal RNA Structure Analysis

H. Van de Eynde, Y. Van de Peer, R. De Wachter

(1988) - Green Photosynthetic Bacteria

DOI
3. The 5S ribosomal RNA sequences of a red algal rhodoplast and a gymnosperm chloroplast. Implications for the evolution of plastids and cyanobacteria

Van den Eynde, H., De Baere, R., De Roeck, E., Van de Peer, Y., Vandenberghe, A., Willekens, P., De Wachter, R.

(1988) - Journal of Molecular Evolution

DOI
2. Primary and secondary structure of the 18S ribosomal RNA of the bird spider Eurypelma californica and evolutionary relationships among eukaryotic phyla

HENDRIKS, L., van BROECKHOVEN, C., VANDENBERGHE, A., van de PEER, Y., de WACHTER, R.

(1988) - European Journal of Biochemistry

DOI
1. Compilation of small ribosomal subunit rna sequences

Dams, E., Hendriks, L., Van De Peer, Y., Neefs, J.-M., Smits, G., Vandenbempt, I., de Wachter, R.

(1988) - Nucleic Acids Research

DOI